SAMBA-ilum 1.0.0.494__tar.gz → 1.0.0.495__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (67) hide show
  1. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/PKG-INFO +1 -1
  2. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
  3. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/__main__.py +1 -1
  4. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/rotation_axis_check.py +27 -32
  5. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/setup.py +1 -1
  6. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/LICENSE.txt +0 -0
  7. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/README.md +0 -0
  8. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
  9. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
  10. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
  11. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/requires.txt +0 -0
  12. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/SAMBA_ilum.egg-info/top_level.txt +0 -0
  13. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/__init__.py +0 -0
  14. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/BZ_2D.py +0 -0
  15. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/HeteroStructure_Generator.py +0 -0
  16. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/HeteroStructure_Generator_OLD_1.py +0 -0
  17. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/HeteroStructure_Generator_OLD_2.py +0 -0
  18. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
  19. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
  20. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
  21. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
  22. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
  23. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
  24. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
  25. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
  26. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
  27. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
  28. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
  29. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
  30. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
  31. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
  32. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
  33. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
  34. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
  35. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
  36. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
  37. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
  38. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
  39. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
  40. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
  41. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/_info_pseudo.py +0 -0
  42. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/a-scan.py +0 -0
  43. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/a-scan_analysis.py +0 -0
  44. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/bader +0 -0
  45. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/bader_poscar.py +0 -0
  46. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/bader_update.py +0 -0
  47. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/charge_transfer.py +0 -0
  48. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/chgsum.pl +0 -0
  49. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/contcar_update.py +0 -0
  50. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/data-base_json.py +0 -0
  51. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/data-base_union.py +0 -0
  52. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/energy_scan.py +0 -0
  53. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/hubbard_correction.py +0 -0
  54. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/job.py +0 -0
  55. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/kpoints.py +0 -0
  56. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/lattice_plot3d.py +0 -0
  57. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/make_files.py +0 -0
  58. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/output.py +0 -0
  59. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/potcar.py +0 -0
  60. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/vdW_DF.py +0 -0
  61. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/xy-scan.py +0 -0
  62. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/xy-scan_analysis.py +0 -0
  63. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/xyz-scan.py +0 -0
  64. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/xyz-scan_analysis.py +0 -0
  65. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/z-scan.py +0 -0
  66. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/samba_ilum/src/z-scan_analysis.py +0 -0
  67. {samba_ilum-1.0.0.494 → samba_ilum-1.0.0.495}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.494
3
+ Version: 1.0.0.495
4
4
  Summary: ...
5
5
  Author: Augusto de Lelis Araujo
6
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  Author-email: augusto-lelis@outlook.com
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.494
3
+ Version: 1.0.0.495
4
4
  Summary: ...
5
5
  Author: Augusto de Lelis Araujo
6
6
  Author-email: augusto-lelis@outlook.com
@@ -16,7 +16,7 @@ dir_samba = os.path.dirname(os.path.realpath(__file__))
16
16
  print(f'{dir_samba}')
17
17
  #--------------------
18
18
 
19
- version = '1.0.0.494'
19
+ version = '1.0.0.495'
20
20
 
21
21
  print(" ")
22
22
  print("=============================================================")
@@ -1,24 +1,26 @@
1
1
  # SAMBA_ilum Copyright (C) 2024 - Closed source
2
2
 
3
3
 
4
-
5
4
  from pymatgen.io.vasp import Poscar
6
5
  from pymatgen.core import Structure
7
6
  from pymatgen.analysis.structure_matcher import StructureMatcher
8
7
  from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
9
8
  #--------------------------------------------------------
10
9
  import numpy as np
11
- import sys
10
+ import shutil
11
+ import sys
12
12
  import os
13
13
 
14
+
14
15
  # Listando os arquivos dentro do diretório "dir_poscar"
15
- files0 = [name for name in os.listdir(dir_files + '/' + dir_poscar + '/') if os.path.isfile(os.path.join(dir_files + '/' + dir_poscar + '/', name))]
16
+ poscar_dir_path = os.path.join(dir_files, dir_poscar)
17
+ files0 = [name for name in os.listdir(poscar_dir_path) if os.path.isfile(os.path.join(poscar_dir_path, name))]
16
18
 
17
19
  #------------
18
20
  stop_code = 0
19
21
  #------------
20
22
  for name in files0:
21
- Lattice = dir_files + '/' + dir_poscar + '/' + name
23
+ Lattice = os.path.join(poscar_dir_path, name)
22
24
 
23
25
  try:
24
26
  estrutura = Structure.from_file(Lattice)
@@ -66,13 +68,24 @@ for name in files0:
66
68
  if (menor_0 != menor_1 and menor_0 != 0.0):
67
69
  stop_code += 1
68
70
 
71
+ # 1. Definindo os diretórios de backup e criando se necessário
72
+ backup_dir = os.path.join(dir_files, 'POSCAR_original')
73
+ os.makedirs(backup_dir, exist_ok=True)
74
+
75
+ # 2. Definindo os caminhos do arquivo original e do backup
76
+ original_filepath = os.path.join(poscar_dir_path, name)
77
+ backup_filepath = os.path.join(backup_dir, name)
78
+
79
+ # 3. Movendo o arquivo original para a pasta de backup
80
+ shutil.move(original_filepath, backup_filepath)
81
+
69
82
  if (stop_code == 1):
70
- print(" ")
71
- print(f"-------------------------------------------------------------")
72
-
83
+ print(" ")
84
+ print(f"-------------------------------------------------------------")
85
+
73
86
  print(f"POSCAR file: {name}")
74
87
  print(f"Discrepância encontrada em relação ao ângulo de rotação em torno do eixo Z")
75
- print(f"Menor ângulo geral: {int(menor_0)}°, Menor ângulo na origem: {int(menor_1)}°")
88
+ print(f"Movendo arquivo original para a pasta 'POSCAR_original' e criando versão corrigida.")
76
89
 
77
90
  op_alvo = None
78
91
  for op_cart in operacoes_1:
@@ -102,34 +115,16 @@ for name in files0:
102
115
  indices_dos_sites = list(range(len(estrutura_corrigida)))
103
116
  estrutura_corrigida.translate_sites(indices_dos_sites, deslocamento_frac, frac_coords=True)
104
117
 
105
- name_base, extensao = os.path.splitext(name)
106
- if not extensao: extensao = '.vasp'
107
- new_name_file = f"{name_base}_fixed{extensao}"
108
- Lattice_new_file = os.path.join(dir_files + '/' + dir_poscar + '/' , new_name_file)
109
-
118
+ # Salvar o arquivo corrigido com o nome_original no diretório original.
119
+ Lattice_new_file = os.path.join(poscar_dir_path, name)
110
120
  estrutura_corrigida.to(fmt="poscar", filename=Lattice_new_file)
111
- print(f"Estrutura corrigida salva como '{new_name_file}'")
121
+ print(f"Estrutura corrigida salva como '{name}' no diretório '{dir_poscar}'.")
122
+
112
123
  print(f"-------------------------------------------------------------")
113
124
 
114
125
  except np.linalg.LinAlgError:
115
126
  print("ERRO: Não foi possível calcular o deslocamento devido a um erro numérico.")
116
127
 
117
128
  except Exception as e:
118
- print(f"ERRO CRÍTICO ao processar o file {name}: {e}")
119
-
120
- if (stop_code == 1):
121
- print(" ")
122
- print(f"Remova a versão anterior do arquivo POSCAR corrigido")
123
- print(f"Faça um Backup da versão corrigida do arquivo POSCAR para evitar ambiguidades em relação ao cálculo do xy-scan")
124
- print(f"Após isso, reinicie a execução do código")
125
- confirmacao = input (" "); confirmacao = str(confirmacao)
126
- sys.exit()
127
-
128
- if (stop_code > 1):
129
- print(" ")
130
- print(f"Remova a versão anterior dos arquivos POSCAR corrigidos")
131
- print(f"Faça um Backup da versão corrigida dos arquivos POSCAR para evitar ambiguidades em relação ao cálculo do xy-scan")
132
- print(f"Após isso, reinicie a execução do código")
133
- confirmacao = input (" "); confirmacao = str(confirmacao)
134
- sys.exit()
135
-
129
+ print(f"Erro Crítico ao processar o file {name}: {e}")
130
+ if (stop_code > 0): sys.exit()
@@ -6,7 +6,7 @@ import json
6
6
 
7
7
  setup(
8
8
  name = "SAMBA_ilum",
9
- version = "1.0.0.494",
9
+ version = "1.0.0.495",
10
10
  entry_points={'console_scripts': ['samba_ilum = samba_ilum:main']},
11
11
  description = "...",
12
12
  author = "Augusto de Lelis Araujo",
File without changes
File without changes