SAMBA-ilum 1.0.0.445__tar.gz → 1.0.0.446__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/PKG-INFO +1 -1
  2. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
  3. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/__main__.py +1 -1
  4. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator.py +25 -27
  5. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/setup.py +1 -1
  6. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/LICENSE.txt +0 -0
  7. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/README.md +0 -0
  8. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
  9. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
  10. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
  11. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/requires.txt +0 -0
  12. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/top_level.txt +0 -0
  13. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/__init__.py +0 -0
  14. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/BZ_2D.py +0 -0
  15. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup.py +0 -0
  16. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup_2.py +0 -0
  17. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
  18. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
  19. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
  20. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
  21. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
  22. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
  23. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
  24. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
  25. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
  26. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
  27. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
  28. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
  29. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
  30. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
  31. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
  32. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
  33. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
  34. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
  35. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
  36. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
  37. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
  38. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
  39. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
  40. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/_info_pseudo.py +0 -0
  41. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/a-scan.py +0 -0
  42. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/a-scan_analysis.py +0 -0
  43. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader +0 -0
  44. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader_poscar.py +0 -0
  45. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader_update.py +0 -0
  46. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/charge_transfer.py +0 -0
  47. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/chgsum.pl +0 -0
  48. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/contcar_update.py +0 -0
  49. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/data-base_json.py +0 -0
  50. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/data-base_union.py +0 -0
  51. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/energy_scan.py +0 -0
  52. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/hubbard_correction.py +0 -0
  53. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/job.py +0 -0
  54. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/kpoints.py +0 -0
  55. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/lattice_plot3d.py +0 -0
  56. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/make_files.py +0 -0
  57. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/output.py +0 -0
  58. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/potcar.py +0 -0
  59. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/vdW_DF.py +0 -0
  60. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xy-scan.py +0 -0
  61. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xy-scan_analysis.py +0 -0
  62. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xyz-scan.py +0 -0
  63. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xyz-scan_analysis.py +0 -0
  64. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/z-scan.py +0 -0
  65. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/z-scan_analysis.py +0 -0
  66. {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.445
3
+ Version: 1.0.0.446
4
4
  Summary: ...
5
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  Author: Augusto de Lelis Araujo
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  Author-email: augusto-lelis@outlook.com
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: SAMBA_ilum
3
- Version: 1.0.0.445
3
+ Version: 1.0.0.446
4
4
  Summary: ...
5
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  Author: Augusto de Lelis Araujo
6
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  Author-email: augusto-lelis@outlook.com
@@ -16,7 +16,7 @@ dir_samba = os.path.dirname(os.path.realpath(__file__))
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  print(f'{dir_samba}')
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  #--------------------
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- version = '1.0.0.445'
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+ version = '1.0.0.446'
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21
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  print(" ")
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  print("=============================================================")
@@ -1338,18 +1338,25 @@ if (n_test == 1):
1338
1338
 
1339
1339
  #------------------------------------------------------------------------------------------------------------------------
1340
1340
  # Utilização de vetores temporários (A,B) a fim de auxilizar na criação da célula intermediária -------------------------
1341
- # Por simplicidade, os vetores temp_A2 e temp_A3 são alinhados ao vetor A1, com temp_B2 e temp_B3 obtidos por rotação ---
1342
1341
  #------------------------------------------------------------------------------------------------------------------------
1343
- temp_A2 = (A1/mod_A1)*mod_A2
1342
+ cos = np.cos(angle0); sin = np.sin(angle0)
1343
+ matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
1344
+ temp_A2 = matriz_rotacao @ A2 # Rotacionando o vetor A2 por angle0, para coincidir com a região do vetor A1
1345
+ #----------------------------
1344
1346
  cos = np.cos(angle_2); sin = np.sin(angle_2)
1345
1347
  matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
1346
- temp_B2 = matriz_rotacao @ ((A1/mod_A1)*mod_B2)
1347
- #----------------------------------------------------
1348
+ temp_B2 = matriz_rotacao @ ((temp_A2/mod_A2)*mod_B2) # Usando a direção do vetor A2 rotacionado para criar B2 rotacionado
1349
+ #---------------------------------------------------
1348
1350
  if (n_Lattice == 3):
1349
- temp_A3 = (A1/mod_A1)*mod_A3
1351
+ cos = np.cos(angle2); sin = np.sin(angle2)
1352
+ matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
1353
+ temp_A3 = matriz_rotacao @ A3 # Rotacionando o vetor A3 por angle0, para coincidir com a região do vetor A1
1354
+ #----------------------------
1350
1355
  cos = np.cos(angle_3); sin = np.sin(angle_3)
1351
1356
  matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
1352
- temp_B3 = matriz_rotacao @ ((A1/mod_A1)*mod_B3)
1357
+ temp_B3 = matriz_rotacao @ ((temp_A3/mod_A3)*mod_B3) # Usando a direção do vetor A3 rotacionado para criar B3 rotacionado
1358
+ #---------------------------------------------------
1359
+
1353
1360
  #-------------------------------------------------------
1354
1361
  # Vetores que definem a célula intermediária -----------
1355
1362
  #-------------------------------------------------------
@@ -1364,21 +1371,9 @@ if (n_test == 1):
1364
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  Area_int = np.linalg.norm(np.cross(A_int, B_int))
1365
1372
  angle_int = np.arccos(np.dot(A_int,B_int)/(mod_A_int*mod_B_int))
1366
1373
 
1367
- #------------------------------------------------------------------------------------------------------------------------
1368
- # Utilização de vetores temporários (A,B) a fim de estimar a deformação sofrida pelas células originais -----------------
1369
- #------------------------------------------------------------------------------------------------------------------------
1370
- A4 = (A1/mod_A1)*mod_A_int
1371
- A5 = (A2/mod_A2)*mod_A_int
1372
- if (n_Lattice == 3): A6 = (A3/mod_A3)*mod_A_int
1373
- #-----------------------------------------------
1374
- cos = np.cos(angle_int); sin = np.sin(angle_int)
1375
- matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
1376
- #--------------------------------------------
1377
- B4 = matriz_rotacao @ ((A1/mod_A1)*mod_B_int)
1378
- B5 = matriz_rotacao @ ((A2/mod_A2)*mod_B_int)
1379
- if (n_Lattice == 3):
1380
- B6 = matriz_rotacao @ ((A3/mod_A3)*mod_B_int)
1381
- #--------------------------------------------------------------------
1374
+ #------------------------------------------------------------
1375
+ # Estimando a deformação e mismatch sofrido pelas células ---
1376
+ #------------------------------------------------------------
1382
1377
  var_A1 = ((mod_A_int -mod_A1)/mod_A1)*100; var_A1 = round(var_A1, 4)
1383
1378
  var_B1 = ((mod_B_int -mod_B1)/mod_B1)*100; var_B1 = round(var_B1, 4)
1384
1379
  var_A2 = ((mod_A_int -mod_A2)/mod_A2)*100; var_A2 = round(var_A2, 4)
@@ -1436,13 +1431,16 @@ if (n_test == 1):
1436
1431
  # Obtenção das Matrizes de Strain para cada rede =====
1437
1432
  #=====================================================
1438
1433
  Lattice_A = [ [A1[0], A1[1]], [B1[0], B1[1]] ]
1439
- Lattice_B = [ [A2[0], A2[1]], [B2[0], B2[1]] ]
1440
- if (n_Lattice == 3): Lattice_C = [ [A3[0], A3[1]], [B3[0], B3[1]] ]
1441
- Lattice_D = [ [A4[0], A4[1]], [B4[0], B4[1]] ]
1442
- Lattice_E = [ [A5[0], A5[1]], [B5[0], B5[1]] ]
1443
- if (n_Lattice == 3): Lattice_F = [ [A6[0], A6[1]], [B6[0], B6[1]] ]
1444
- I = np.eye(2)
1434
+ Lattice_B = [ [temp_A2[0], temp_A2[1]], [temp_B2[0], temp_B2[1]] ]
1435
+ if (n_Lattice == 3):
1436
+ Lattice_C = [ [temp_A3[0], temp_A3[1]], [temp_B3[0], temp_B3[1]] ]
1437
+ #---------------------------------------------
1438
+ Lattice_D = [ [A_int[0], A_int[1]], [B_int[0], B_int[1]] ]
1439
+ Lattice_E = Lattice_D
1440
+ if (n_Lattice == 3):
1441
+ Lattice_F = Lattice_D
1445
1442
  #---------------------------------------
1443
+ I = np.eye(2)
1446
1444
  Lattice_A_inv = np.linalg.inv(Lattice_A)
1447
1445
  F_A = np.dot(Lattice_D, Lattice_A_inv)
1448
1446
  MStrain_A = 0.5 * (np.dot(F_A.T, F_A) - I)
@@ -6,7 +6,7 @@ import json
6
6
 
7
7
  setup(
8
8
  name = "SAMBA_ilum",
9
- version = "1.0.0.445",
9
+ version = "1.0.0.446",
10
10
  entry_points={'console_scripts': ['samba_ilum = samba_ilum:main']},
11
11
  description = "...",
12
12
  author = "Augusto de Lelis Araujo",
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