SAMBA-ilum 1.0.0.445__tar.gz → 1.0.0.446__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/PKG-INFO +1 -1
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/__main__.py +1 -1
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator.py +25 -27
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/setup.py +1 -1
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/LICENSE.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/README.md +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/requires.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/SAMBA_ilum.egg-info/top_level.txt +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/__init__.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/BZ_2D.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup_2.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/_info_pseudo.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/a-scan.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/a-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader_poscar.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/bader_update.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/charge_transfer.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/chgsum.pl +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/contcar_update.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/data-base_json.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/data-base_union.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/energy_scan.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/hubbard_correction.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/job.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/kpoints.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/lattice_plot3d.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/make_files.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/output.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/potcar.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/vdW_DF.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xy-scan.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xy-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xyz-scan.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/xyz-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/z-scan.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/z-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/setup.cfg +0 -0
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#------------------------------------------------------------------------------------------------------------------------
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# Utilização de vetores temporários (A,B) a fim de auxilizar na criação da célula intermediária -------------------------
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# Por simplicidade, os vetores temp_A2 e temp_A3 são alinhados ao vetor A1, com temp_B2 e temp_B3 obtidos por rotação ---
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#------------------------------------------------------------------------------------------------------------------------
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-
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cos = np.cos(angle0); sin = np.sin(angle0)
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matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
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temp_A2 = matriz_rotacao @ A2 # Rotacionando o vetor A2 por angle0, para coincidir com a região do vetor A1
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#----------------------------
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cos = np.cos(angle_2); sin = np.sin(angle_2)
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matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
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temp_B2 = matriz_rotacao @ ((
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temp_B2 = matriz_rotacao @ ((temp_A2/mod_A2)*mod_B2) # Usando a direção do vetor A2 rotacionado para criar B2 rotacionado
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#---------------------------------------------------
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if (n_Lattice == 3):
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cos = np.cos(angle2); sin = np.sin(angle2)
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matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
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temp_A3 = matriz_rotacao @ A3 # Rotacionando o vetor A3 por angle0, para coincidir com a região do vetor A1
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#----------------------------
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cos = np.cos(angle_3); sin = np.sin(angle_3)
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matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
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temp_B3 = matriz_rotacao @ ((
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temp_B3 = matriz_rotacao @ ((temp_A3/mod_A3)*mod_B3) # Usando a direção do vetor A3 rotacionado para criar B3 rotacionado
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#---------------------------------------------------
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#-------------------------------------------------------
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# Vetores que definem a célula intermediária -----------
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#-------------------------------------------------------
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Area_int = np.linalg.norm(np.cross(A_int, B_int))
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angle_int = np.arccos(np.dot(A_int,B_int)/(mod_A_int*mod_B_int))
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#
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A4 = (A1/mod_A1)*mod_A_int
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A5 = (A2/mod_A2)*mod_A_int
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if (n_Lattice == 3): A6 = (A3/mod_A3)*mod_A_int
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#-----------------------------------------------
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cos = np.cos(angle_int); sin = np.sin(angle_int)
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matriz_rotacao = np.array([[cos, -sin], [sin, cos]])
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#--------------------------------------------
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B4 = matriz_rotacao @ ((A1/mod_A1)*mod_B_int)
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B5 = matriz_rotacao @ ((A2/mod_A2)*mod_B_int)
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if (n_Lattice == 3):
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B6 = matriz_rotacao @ ((A3/mod_A3)*mod_B_int)
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#--------------------------------------------------------------------
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#------------------------------------------------------------
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# Estimando a deformação e mismatch sofrido pelas células ---
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#------------------------------------------------------------
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var_A1 = ((mod_A_int -mod_A1)/mod_A1)*100; var_A1 = round(var_A1, 4)
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var_B1 = ((mod_B_int -mod_B1)/mod_B1)*100; var_B1 = round(var_B1, 4)
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var_A2 = ((mod_A_int -mod_A2)/mod_A2)*100; var_A2 = round(var_A2, 4)
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# Obtenção das Matrizes de Strain para cada rede =====
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#=====================================================
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Lattice_A = [ [A1[0], A1[1]], [B1[0], B1[1]] ]
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Lattice_B = [ [
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if (n_Lattice == 3):
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Lattice_B = [ [temp_A2[0], temp_A2[1]], [temp_B2[0], temp_B2[1]] ]
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if (n_Lattice == 3):
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Lattice_C = [ [temp_A3[0], temp_A3[1]], [temp_B3[0], temp_B3[1]] ]
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#---------------------------------------------
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Lattice_D = [ [A_int[0], A_int[1]], [B_int[0], B_int[1]] ]
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Lattice_E = Lattice_D
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if (n_Lattice == 3):
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Lattice_F = Lattice_D
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#---------------------------------------
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I = np.eye(2)
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Lattice_A_inv = np.linalg.inv(Lattice_A)
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F_A = np.dot(Lattice_D, Lattice_A_inv)
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MStrain_A = 0.5 * (np.dot(F_A.T, F_A) - I)
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{samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup.py
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{samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/HeteroStructure_Generator_backup_2.py
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{samba_ilum-1.0.0.445 → samba_ilum-1.0.0.446}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input
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