SAMBA-ilum 1.0.0.418__tar.gz → 1.0.0.420__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/PKG-INFO +1 -1
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/PKG-INFO +1 -1
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/__main__.py +1 -1
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/BZ_2D.py +14 -7
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/job.py +4 -3
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/make_files.py +3 -2
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/setup.py +1 -1
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/LICENSE.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/README.md +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/SOURCES.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/dependency_links.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/entry_points.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/requires.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/SAMBA_ilum.egg-info/top_level.txt +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/__init__.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/HeteroStructure_Generator.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_a-scan +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_bader +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_bader.SO +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_bands +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_bands.SO +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_dos +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_dos.SO +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_relax +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_scf +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_scf.SO +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_xy-scan +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_xyz-scan +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/INCAR_z-scan +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/SAMBA_WorkFlow.input +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.bands +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.chgcar +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.dos +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.location +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.locpot +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.orbitals +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/inputs_VASProcar/input.vasprocar.spin +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/vdw_kernel.bindat +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/_info_pseudo.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/a-scan.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/a-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/bader +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/bader_poscar.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/bader_update.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/charge_transfer.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/chgsum.pl +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/contcar_update.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/data-base_json.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/data-base_union.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/energy_scan.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/kpoints.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/lattice_plot3d.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/output.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/potcar.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/vdW_DF.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/xy-scan.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/xy-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/xyz-scan.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/xyz-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/z-scan.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/z-scan_analysis.py +0 -0
- {samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/setup.cfg +0 -0
|
@@ -1,5 +1,6 @@
|
|
|
1
1
|
#-----------------
|
|
2
2
|
import numpy as np
|
|
3
|
+
import sys
|
|
3
4
|
import os
|
|
4
5
|
#----------------
|
|
5
6
|
import matplotlib
|
|
@@ -16,9 +17,15 @@ from scipy.spatial import Voronoi
|
|
|
16
17
|
#============================================================
|
|
17
18
|
kpoints_file = []
|
|
18
19
|
kpath = []
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
if os.path.isdir('output/
|
|
20
|
+
#-------------------
|
|
21
|
+
continue_plot_bz = 0
|
|
22
|
+
if os.path.isdir('output/Bandas'):
|
|
23
|
+
dir_kpath = 'bands'
|
|
24
|
+
continue_plot_bz = 1
|
|
25
|
+
if os.path.isdir('output/Bandas_SO'):
|
|
26
|
+
dir_kpath = 'bands.SO'
|
|
27
|
+
continue_plot_bz = 1
|
|
28
|
+
if (continue_plot_bz == 0): sys.exit()
|
|
22
29
|
#-----------------------------------------------------------------------------
|
|
23
30
|
if os.path.isfile(dir_kpath + '/' + 'KPOINTS'): kpoints_file.append('KPOINTS')
|
|
24
31
|
#--------------------------------------------------------------------------------------
|
|
@@ -157,7 +164,7 @@ plt.ylim((y_min, y_max))
|
|
|
157
164
|
#----------------------------------------------------
|
|
158
165
|
ax.legend(loc = "lower left", title = "", fontsize=8)
|
|
159
166
|
ax.set_box_aspect(abs((y_max - y_min) / (x_max - x_min)))
|
|
160
|
-
|
|
161
|
-
if os.path.isdir('output/Bandas'): plt.savefig('output/Brillouin_Zone.png', dpi = 600, bbox_inches='tight', pad_inches=0)
|
|
162
|
-
if os.path.isdir('output/Bandas_SO'): plt.savefig('output/Brillouin_Zone.png', dpi = 600, bbox_inches='tight', pad_inches=0)
|
|
163
|
-
|
|
167
|
+
#-------------------------------------------------------------------------------------------------------------------------------
|
|
168
|
+
if os.path.isdir('output/Bandas'): plt.savefig('output/Bandas/Brillouin_Zone.png', dpi = 600, bbox_inches='tight', pad_inches=0)
|
|
169
|
+
if os.path.isdir('output/Bandas_SO'): plt.savefig('output/Bandas_SO/Brillouin_Zone.png', dpi = 600, bbox_inches='tight', pad_inches=0)
|
|
170
|
+
#-------------------------------------------------------------------------------------------------------------------------------------
|
|
@@ -45,9 +45,9 @@ job = open(dir_out + '/job0.sh', "w")
|
|
|
45
45
|
#====================================
|
|
46
46
|
job.write(f'#!/bin/bash \n')
|
|
47
47
|
job.write(f' \n')
|
|
48
|
-
job.write(f'cd $dir0 \n'
|
|
49
|
-
job.write(f'mv python_virtual python_virtual_delete \n'
|
|
50
|
-
job.write(f'rm -r python_virtual_delete \n'
|
|
48
|
+
job.write(f'cd $dir0 \n')
|
|
49
|
+
job.write(f'mv python_virtual python_virtual_delete \n')
|
|
50
|
+
job.write(f'rm -r python_virtual_delete \n')
|
|
51
51
|
job.write(f' \n')
|
|
52
52
|
job.write(f'#------------------------------- \n')
|
|
53
53
|
job.write(f'dir_virtual="{dir_virtual_python}" \n')
|
|
@@ -395,6 +395,7 @@ job.write(f' fi \n')
|
|
|
395
395
|
job.write(f' done \n')
|
|
396
396
|
job.write(f' cd $dir0/$i \n')
|
|
397
397
|
job.write(f' python3 output.py \n')
|
|
398
|
+
job.write(f' python3 BZ_2D.py \n')
|
|
398
399
|
job.write(f' python3 lattice_plot3d.py \n')
|
|
399
400
|
job.write(f' #------------------------ \n')
|
|
400
401
|
job.write(f' cp -r $dir0/$i/output/POSCAR $dir0/$i/output/POSCAR.info \n')
|
|
@@ -639,10 +639,11 @@ for i in range(len(files)):
|
|
|
639
639
|
# Copiando códigos python para o diretorio principal -----------------------------
|
|
640
640
|
#---------------------------------------------------------------------------------
|
|
641
641
|
for i in range(len(files)):
|
|
642
|
+
shutil.copyfile(dir_codes + '/data-base_json.py', dir_out + '/' + files[i] + '/data-base_json.py')
|
|
642
643
|
shutil.copyfile(dir_codes + '/lattice_plot3d.py', dir_out + '/' + files[i] + '/lattice_plot3d.py')
|
|
643
644
|
shutil.copyfile(dir_codes + '/output.py', dir_out + '/' + files[i] + '/output.py')
|
|
644
|
-
|
|
645
|
-
|
|
645
|
+
shutil.copyfile(dir_codes + '/BZ_2D.py', dir_out + '/' + files[i] + '/BZ_2D.py')
|
|
646
|
+
#-------------------------------------------------------------------------------
|
|
646
647
|
dir_file = dir_out + '/' + files[i] + '/data-base_json.py'
|
|
647
648
|
with open(dir_file, "r") as file: content = file.read()
|
|
648
649
|
content = content.replace('# replace_type_pseudo', 'pseudo_type = ' + "'" + str(replace_type_pseudo) + "'")
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
{samba_ilum-1.0.0.418 → samba_ilum-1.0.0.420}/samba_ilum/src/INPUTS/SAMBA_HeteroStructure.input
RENAMED
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|