Rhapso 0.1.97__tar.gz → 0.1.98__tar.gz

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Files changed (107) hide show
  1. {rhapso-0.1.97 → rhapso-0.1.98}/PKG-INFO +2 -2
  2. {rhapso-0.1.97 → rhapso-0.1.98}/README.md +1 -1
  3. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/PKG-INFO +2 -2
  4. {rhapso-0.1.97 → rhapso-0.1.98}/setup.py +2 -1
  5. {rhapso-0.1.97 → rhapso-0.1.98}/LICENSE +0 -0
  6. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/__init__.py +0 -0
  7. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/data_prep/__init__.py +0 -0
  8. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/data_prep/n5_reader.py +0 -0
  9. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/data_prep/s3_big_stitcher_reader.py +0 -0
  10. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/data_prep/xml_to_dataframe.py +0 -0
  11. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/__init__.py +0 -0
  12. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/advanced_refinement.py +0 -0
  13. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/difference_of_gaussian.py +0 -0
  14. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/image_reader.py +0 -0
  15. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/metadata_builder.py +0 -0
  16. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/overlap_detection.py +0 -0
  17. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/points_validation.py +0 -0
  18. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/save_interest_points.py +0 -0
  19. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/detection/view_transform_models.py +0 -0
  20. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/__init__.py +0 -0
  21. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/__init__.py +0 -0
  22. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/blend.py +0 -0
  23. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/fusion.py +0 -0
  24. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/geometry.py +0 -0
  25. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/io.py +0 -0
  26. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/script_utils.py +0 -0
  27. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion/setup.py +0 -0
  28. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/affine_fusion_worker.py +0 -0
  29. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/__init__.py +0 -0
  30. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/__init__.py +0 -0
  31. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/compress/__init__.py +0 -0
  32. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/compress/czi_to_zarr.py +0 -0
  33. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/compress/zarr_writer.py +0 -0
  34. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/models.py +0 -0
  35. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/utils/__init__.py +0 -0
  36. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/utils/utils.py +0 -0
  37. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_hcr_data_transformation/zeiss_job.py +0 -0
  38. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/__init__.py +0 -0
  39. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/array_to_zarr.py +0 -0
  40. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/radial_correction.py +0 -0
  41. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/run_capsule.py +0 -0
  42. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/utils/__init__.py +0 -0
  43. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/utils/utils.py +0 -0
  44. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale/aind_z1_radial_correction/worker.py +0 -0
  45. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/multiscale_worker.py +0 -0
  46. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/__init__.py +0 -0
  47. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/dispim_link.py +0 -0
  48. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/exaspim_link.py +0 -0
  49. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/hcr_link.py +0 -0
  50. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/iSPIM_top.py +0 -0
  51. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/link_utils.py +0 -0
  52. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/main.py +0 -0
  53. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/ng_layer.py +0 -0
  54. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/ng_state.py +0 -0
  55. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/parsers.py +0 -0
  56. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/raw_link.py +0 -0
  57. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/utils/__init__.py +0 -0
  58. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/utils/shader_utils.py +0 -0
  59. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/utils/transfer.py +0 -0
  60. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen/utils/utils.py +0 -0
  61. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/fusion/neuroglancer_link_gen_worker.py +0 -0
  62. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/matching/__init__.py +0 -0
  63. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/matching/load_and_transform_points.py +0 -0
  64. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/matching/ransac_matching.py +0 -0
  65. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/matching/save_matches.py +0 -0
  66. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/matching/xml_parser.py +0 -0
  67. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/__init__.py +0 -0
  68. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/__init__.py +0 -0
  69. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/aws/__init__.py +0 -0
  70. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/aws/alignment_pipeline.py +0 -0
  71. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/aws/config/__init__.py +0 -0
  72. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/evaluation.py +0 -0
  73. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/interest_point_detection.py +0 -0
  74. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/interest_point_matching.py +0 -0
  75. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/local/__init__.py +0 -0
  76. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/local/alignment_pipeline.py +0 -0
  77. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/matching_stats.py +0 -0
  78. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/param/__init__.py +0 -0
  79. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/solver.py +0 -0
  80. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/pipelines/ray/split_dataset.py +0 -0
  81. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/__init__.py +0 -0
  82. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/compute_tiles.py +0 -0
  83. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/concatenate_models.py +0 -0
  84. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/connected_graphs.py +0 -0
  85. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/data_prep.py +0 -0
  86. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/global_optimization.py +0 -0
  87. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/model_and_tile_setup.py +0 -0
  88. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/pre_align_tiles.py +0 -0
  89. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/save_results.py +0 -0
  90. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/view_transforms.py +0 -0
  91. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/solver/xml_to_dataframe_solver.py +0 -0
  92. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/__init__.py +0 -0
  93. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/compute_grid_rules.py +0 -0
  94. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/save_points.py +0 -0
  95. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/save_xml.py +0 -0
  96. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/split_images.py +0 -0
  97. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/split_dataset/xml_to_dataframe_split.py +0 -0
  98. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/SOURCES.txt +0 -0
  99. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/dependency_links.txt +0 -0
  100. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/requires.txt +0 -0
  101. {rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/top_level.txt +0 -0
  102. {rhapso-0.1.97 → rhapso-0.1.98}/pyproject.toml +0 -0
  103. {rhapso-0.1.97 → rhapso-0.1.98}/setup.cfg +0 -0
  104. {rhapso-0.1.97 → rhapso-0.1.98}/tests/__init__.py +0 -0
  105. {rhapso-0.1.97 → rhapso-0.1.98}/tests/test_detection.py +0 -0
  106. {rhapso-0.1.97 → rhapso-0.1.98}/tests/test_matching.py +0 -0
  107. {rhapso-0.1.97 → rhapso-0.1.98}/tests/test_solving.py +0 -0
{rhapso-0.1.97 → rhapso-0.1.98}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: Rhapso
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- Version: 0.1.97
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+ Version: 0.1.98
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  Summary: A python package for aligning and stitching light sheet fluorescence microscopy images together
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  Author: ND
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  Author-email: sean.fite@alleninstitute.org
@@ -138,7 +138,7 @@ There is a special case in some datasets where the z-stack is very large. In thi
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  **Common Causes of Poor Alignment**
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  - Not enough quality matches (adjust sigma threshold until you do)
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  - Data is not consistent looking (we take a global approach to params)
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- - Large translations needed (extened search radius)
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+ - Large translations needed (extend search radius)
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  - Translations that extend beyond overlapping span (increase overlap)
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  ---
{rhapso-0.1.97 → rhapso-0.1.98}/README.md RENAMED
@@ -92,7 +92,7 @@ There is a special case in some datasets where the z-stack is very large. In thi
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  **Common Causes of Poor Alignment**
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  - Not enough quality matches (adjust sigma threshold until you do)
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  - Data is not consistent looking (we take a global approach to params)
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- - Large translations needed (extened search radius)
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+ - Large translations needed (extend search radius)
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  - Translations that extend beyond overlapping span (increase overlap)
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  ---
{rhapso-0.1.97 → rhapso-0.1.98}/Rhapso.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: Rhapso
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- Version: 0.1.97
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  Summary: A python package for aligning and stitching light sheet fluorescence microscopy images together
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  Author: ND
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  Author-email: sean.fite@alleninstitute.org
@@ -138,7 +138,7 @@ There is a special case in some datasets where the z-stack is very large. In thi
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  **Common Causes of Poor Alignment**
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  - Not enough quality matches (adjust sigma threshold until you do)
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  - Data is not consistent looking (we take a global approach to params)
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- - Large translations needed (extened search radius)
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+ - Large translations needed (extend search radius)
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  - Translations that extend beyond overlapping span (increase overlap)
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  ---
{rhapso-0.1.97 → rhapso-0.1.98}/setup.py RENAMED
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  setup(
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  name='Rhapso',
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  author='ND',
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  author_email='sean.fite@alleninstitute.org',
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  description='A python package for aligning and stitching light sheet fluorescence microscopy images together',
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{rhapso-0.1.97 → rhapso-0.1.98}/LICENSE RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/Rhapso/__init__.py RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/pyproject.toml RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/setup.cfg RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/tests/__init__.py RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/tests/test_detection.py RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/tests/test_matching.py RENAMED
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{rhapso-0.1.97 → rhapso-0.1.98}/tests/test_solving.py RENAMED
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