Replidec 0.3.2__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. {replidec-0.3.2/Replidec.egg-info → replidec-0.3.3}/PKG-INFO +1 -1
  2. {replidec-0.3.2 → replidec-0.3.3}/Replidec/Replidec.py +1 -1
  3. {replidec-0.3.2 → replidec-0.3.3/Replidec.egg-info}/PKG-INFO +1 -1
  4. {replidec-0.3.2 → replidec-0.3.3}/setup.py +1 -1
  5. {replidec-0.3.2 → replidec-0.3.3}/LICENSE +0 -0
  6. {replidec-0.3.2 → replidec-0.3.3}/MANIFEST.in +0 -0
  7. {replidec-0.3.2 → replidec-0.3.3}/README.rst +0 -0
  8. {replidec-0.3.2 → replidec-0.3.3}/Replidec/Replidec_cmdline.py +0 -0
  9. {replidec-0.3.2 → replidec-0.3.3}/Replidec/Replidec_multi.py +0 -0
  10. {replidec-0.3.2 → replidec-0.3.3}/Replidec/__init__.py +0 -0
  11. {replidec-0.3.2 → replidec-0.3.3}/Replidec/cli.py +0 -0
  12. {replidec-0.3.2 → replidec-0.3.3}/Replidec/utility.py +0 -0
  13. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/SOURCES.txt +0 -0
  14. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/dependency_links.txt +0 -0
  15. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/entry_points.txt +0 -0
  16. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/requires.txt +0 -0
  17. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/top_level.txt +0 -0
  18. {replidec-0.3.2 → replidec-0.3.3}/Replidec.egg-info/zip-safe +0 -0
  19. {replidec-0.3.2 → replidec-0.3.3}/setup.cfg +0 -0
  20. {replidec-0.3.2 → replidec-0.3.3}/test/example/example.list +0 -0
  21. {replidec-0.3.2 → replidec-0.3.3}/test/example/example.small.list +0 -0
  22. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/generate.sh +0 -0
  23. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaaa +0 -0
  24. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaab +0 -0
  25. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaac +0 -0
  26. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaad +0 -0
  27. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaae +0 -0
  28. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaaf +0 -0
  29. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaag +0 -0
  30. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaah +0 -0
  31. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaai +0 -0
  32. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaaj +0 -0
  33. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaak +0 -0
  34. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaal +0 -0
  35. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaam +0 -0
  36. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaan +0 -0
  37. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaao +0 -0
  38. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaap +0 -0
  39. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test/genome.test.fnaaq +0 -0
  40. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test.index +0 -0
  41. {replidec-0.3.2 → replidec-0.3.3}/test/example/genome_test.small.index +0 -0
  42. {replidec-0.3.2 → replidec-0.3.3}/test/example/mock_data_single_lifestyleBC.py +0 -0
  43. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.1.faa +0 -0
  44. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.10.faa +0 -0
  45. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.11.faa +0 -0
  46. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.12.faa +0 -0
  47. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.13.faa +0 -0
  48. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.14.faa +0 -0
  49. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.15.faa +0 -0
  50. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.16.faa +0 -0
  51. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.17.faa +0 -0
  52. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.18.faa +0 -0
  53. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.19.faa +0 -0
  54. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.2.faa +0 -0
  55. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.20.faa +0 -0
  56. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.21.faa +0 -0
  57. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.22.faa +0 -0
  58. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.3.faa +0 -0
  59. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.4.faa +0 -0
  60. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.5.faa +0 -0
  61. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.6.faa +0 -0
  62. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.7.faa +0 -0
  63. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.8.faa +0 -0
  64. {replidec-0.3.2 → replidec-0.3.3}/test/example/simulate_art_sample1.9.faa +0 -0
  65. {replidec-0.3.2 → replidec-0.3.3}/test/example/test.contig.small.fa +0 -0
  66. {replidec-0.3.2 → replidec-0.3.3}/test/example.sh +0 -0
{replidec-0.3.2/Replidec.egg-info → replidec-0.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: Replidec
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- Version: 0.3.2
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+ Version: 0.3.3
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  Summary: Replication Cycle Detector for Phages
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  Home-page: https://github.com/deng-lab/Replidec
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  Author: Xue Peng
{replidec-0.3.2 → replidec-0.3.3}/Replidec/Replidec.py RENAMED
@@ -158,7 +158,7 @@ def load_hmmsearch_opt(hmmsearch_opt, creteria=1e-5):
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  with open(hmmsearch_opt) as f:
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  for line in f:
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  if not line.startswith("#"):
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- t = re.split("\s+", line.strip("\n"))
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+ t = re.split(r"\s+", line.strip("\n"))
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  target_name, target_accession, query_name, accession, Evalue, score, bias, bst_Evalue, bst_score, bst_bias,\
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  exp, reg, clu, ov, env, dom, rep, inc, *description_of_target = t
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  accession = accession.split(".")[0]
{replidec-0.3.2 → replidec-0.3.3/Replidec.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: Replidec
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- Version: 0.3.2
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+ Version: 0.3.3
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  Summary: Replication Cycle Detector for Phages
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  Home-page: https://github.com/deng-lab/Replidec
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  Author: Xue Peng
{replidec-0.3.2 → replidec-0.3.3}/setup.py RENAMED
@@ -11,7 +11,7 @@ requirements = ["biopython>=1.77",
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  setup(
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  name='Replidec',
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- version='0.3.2',
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+ version='0.3.3',
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  author="Xue Peng",
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  author_email='xue.peng@helmholtz-muenchen.de',
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  keywords='Replidec',
{replidec-0.3.2 → replidec-0.3.3}/LICENSE RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/MANIFEST.in RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/README.rst RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/Replidec/__init__.py RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/Replidec/cli.py RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/Replidec/utility.py RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/setup.cfg RENAMED
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{replidec-0.3.2 → replidec-0.3.3}/test/example.sh RENAMED
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