RNApolis 0.7.0__tar.gz → 0.8.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. {rnapolis-0.7.0/src/RNApolis.egg-info → rnapolis-0.8.1}/PKG-INFO +1 -1
  2. {rnapolis-0.7.0 → rnapolis-0.8.1}/setup.py +2 -1
  3. {rnapolis-0.7.0 → rnapolis-0.8.1/src/RNApolis.egg-info}/PKG-INFO +1 -1
  4. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/SOURCES.txt +1 -0
  5. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/entry_points.txt +1 -0
  6. rnapolis-0.8.1/src/rnapolis/parser_v2.py +1127 -0
  7. rnapolis-0.8.1/src/rnapolis/splitter.py +128 -0
  8. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/unifier.py +20 -5
  9. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_v2.py +181 -2
  10. rnapolis-0.7.0/src/rnapolis/parser_v2.py +0 -506
  11. {rnapolis-0.7.0 → rnapolis-0.8.1}/LICENSE +0 -0
  12. {rnapolis-0.7.0 → rnapolis-0.8.1}/README.md +0 -0
  13. {rnapolis-0.7.0 → rnapolis-0.8.1}/pyproject.toml +0 -0
  14. {rnapolis-0.7.0 → rnapolis-0.8.1}/setup.cfg +0 -0
  15. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/dependency_links.txt +0 -0
  16. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/requires.txt +0 -0
  17. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/top_level.txt +0 -0
  18. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/adapter.py +0 -0
  19. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/aligner.py +0 -0
  20. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/annotator.py +0 -0
  21. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/clashfinder.py +0 -0
  22. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/common.py +0 -0
  23. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/component_A.csv +0 -0
  24. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/component_C.csv +0 -0
  25. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/component_G.csv +0 -0
  26. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/component_U.csv +0 -0
  27. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/metareader.py +0 -0
  28. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/mmcif_pdbx_v50.dic +0 -0
  29. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/molecule_filter.py +0 -0
  30. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/motif_extractor.py +0 -0
  31. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/parser.py +0 -0
  32. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/rfam_folder.py +0 -0
  33. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/tertiary.py +0 -0
  34. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/tertiary_v2.py +0 -0
  35. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/transformer.py +0 -0
  36. {rnapolis-0.7.0 → rnapolis-0.8.1}/src/rnapolis/util.py +0 -0
  37. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_adapter.py +0 -0
  38. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_annotator.py +0 -0
  39. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_bugfixes.py +0 -0
  40. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_common.py +0 -0
  41. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_metareader.py +0 -0
  42. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_molecule_filter.py +0 -0
  43. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_parser.py +0 -0
  44. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_quadruplexes.py +0 -0
  45. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_rfam_folder.py +0 -0
  46. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_tertiary.py +0 -0
  47. {rnapolis-0.7.0 → rnapolis-0.8.1}/tests/test_transformer.py +0 -0
{rnapolis-0.7.0/src/RNApolis.egg-info → rnapolis-0.8.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: RNApolis
3
- Version: 0.7.0
3
+ Version: 0.8.1
4
4
  Summary: A Python library containing RNA-related bioinformatics functions and classes
5
5
  Home-page: https://github.com/tzok/rnapolis-py
6
6
  Author: Tomasz Zok
{rnapolis-0.7.0 → rnapolis-0.8.1}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md") as f:
5
5
 
6
6
  setup(
7
7
  name="RNApolis",
8
- version="0.7.0",
8
+ version="0.8.1",
9
9
  packages=["rnapolis"],
10
10
  package_dir={"": "src"},
11
11
  author="Tomasz Zok",
@@ -36,6 +36,7 @@ setup(
36
36
  "transformer=rnapolis.transformer:main",
37
37
  "rfam-folder=rnapolis.rfam_folder:main",
38
38
  "unifier=rnapolis.unifier:main",
39
+ "splitter=rnapolis.splitter:main",
39
40
  ]
40
41
  },
41
42
  include_package_data=True,
{rnapolis-0.7.0 → rnapolis-0.8.1/src/RNApolis.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: RNApolis
3
- Version: 0.7.0
3
+ Version: 0.8.1
4
4
  Summary: A Python library containing RNA-related bioinformatics functions and classes
5
5
  Home-page: https://github.com/tzok/rnapolis-py
6
6
  Author: Tomasz Zok
{rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/SOURCES.txt RENAMED
@@ -24,6 +24,7 @@ src/rnapolis/motif_extractor.py
24
24
  src/rnapolis/parser.py
25
25
  src/rnapolis/parser_v2.py
26
26
  src/rnapolis/rfam_folder.py
27
+ src/rnapolis/splitter.py
27
28
  src/rnapolis/tertiary.py
28
29
  src/rnapolis/tertiary_v2.py
29
30
  src/rnapolis/transformer.py
{rnapolis-0.7.0 → rnapolis-0.8.1}/src/RNApolis.egg-info/entry_points.txt RENAMED
@@ -7,5 +7,6 @@ metareader = rnapolis.metareader:main
7
7
  molecule-filter = rnapolis.molecule_filter:main
8
8
  motif-extractor = rnapolis.motif_extractor:main
9
9
  rfam-folder = rnapolis.rfam_folder:main
10
+ splitter = rnapolis.splitter:main
10
11
  transformer = rnapolis.transformer:main
11
12
  unifier = rnapolis.unifier:main