RNApolis 0.3.13__tar.gz → 0.3.14__tar.gz

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Files changed (31) hide show
  1. {rnapolis-0.3.13/src/RNApolis.egg-info → rnapolis-0.3.14}/PKG-INFO +1 -1
  2. {rnapolis-0.3.13 → rnapolis-0.3.14}/setup.py +1 -1
  3. {rnapolis-0.3.13 → rnapolis-0.3.14/src/RNApolis.egg-info}/PKG-INFO +1 -1
  4. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/common.py +5 -1
  5. {rnapolis-0.3.13 → rnapolis-0.3.14}/LICENSE +0 -0
  6. {rnapolis-0.3.13 → rnapolis-0.3.14}/README.md +0 -0
  7. {rnapolis-0.3.13 → rnapolis-0.3.14}/pyproject.toml +0 -0
  8. {rnapolis-0.3.13 → rnapolis-0.3.14}/setup.cfg +0 -0
  9. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/RNApolis.egg-info/SOURCES.txt +0 -0
  10. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/RNApolis.egg-info/dependency_links.txt +0 -0
  11. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/RNApolis.egg-info/entry_points.txt +0 -0
  12. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/RNApolis.egg-info/requires.txt +0 -0
  13. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/RNApolis.egg-info/top_level.txt +0 -0
  14. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/annotator.py +0 -0
  15. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/clashfinder.py +0 -0
  16. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/metareader.py +0 -0
  17. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/molecule_filter.py +0 -0
  18. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/motif_extractor.py +0 -0
  19. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/parser.py +0 -0
  20. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/rfam_folder.py +0 -0
  21. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/tertiary.py +0 -0
  22. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/transformer.py +0 -0
  23. {rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/util.py +0 -0
  24. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_annotator.py +0 -0
  25. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_bugfixes.py +0 -0
  26. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_common.py +0 -0
  27. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_metareader.py +0 -0
  28. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_parser.py +0 -0
  29. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_quadruplexes.py +0 -0
  30. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_rfam_folder.py +0 -0
  31. {rnapolis-0.3.13 → rnapolis-0.3.14}/tests/test_tertiary.py +0 -0
{rnapolis-0.3.13/src/RNApolis.egg-info → rnapolis-0.3.14}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: RNApolis
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- Version: 0.3.13
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+ Version: 0.3.14
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
{rnapolis-0.3.13 → rnapolis-0.3.14}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md") as f:
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  setup(
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  name="RNApolis",
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- version="0.3.13",
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+ version="0.3.14",
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  packages=["rnapolis"],
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  package_dir={"": "src"},
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  author="Tomasz Zok",
{rnapolis-0.3.13 → rnapolis-0.3.14/src/RNApolis.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: RNApolis
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- Version: 0.3.13
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+ Version: 0.3.14
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
{rnapolis-0.3.13 → rnapolis-0.3.14}/src/rnapolis/common.py RENAMED
@@ -869,8 +869,12 @@ class BpSeq:
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  graph[i].add(j)
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  graph[j].add(i)
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- # find all connected components
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+ # early exit for non-pseudoknotted structures
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  vertices = list(graph.keys())
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+ if not vertices:
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+ return [self.fcfs]
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+
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+ # find all connected components
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  visited = {vertex: False for vertex in vertices}
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  components = []
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{rnapolis-0.3.13 → rnapolis-0.3.14}/LICENSE RENAMED
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{rnapolis-0.3.13 → rnapolis-0.3.14}/README.md RENAMED
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{rnapolis-0.3.13 → rnapolis-0.3.14}/pyproject.toml RENAMED
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{rnapolis-0.3.13 → rnapolis-0.3.14}/setup.cfg RENAMED
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