RNApolis 0.10.0__tar.gz → 0.10.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (48) hide show
  1. {rnapolis-0.10.0/src/RNApolis.egg-info → rnapolis-0.10.1}/PKG-INFO +1 -1
  2. {rnapolis-0.10.0 → rnapolis-0.10.1}/setup.py +1 -1
  3. {rnapolis-0.10.0 → rnapolis-0.10.1/src/RNApolis.egg-info}/PKG-INFO +1 -1
  4. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/parser.py +3 -0
  5. {rnapolis-0.10.0 → rnapolis-0.10.1}/LICENSE +0 -0
  6. {rnapolis-0.10.0 → rnapolis-0.10.1}/README.md +0 -0
  7. {rnapolis-0.10.0 → rnapolis-0.10.1}/pyproject.toml +0 -0
  8. {rnapolis-0.10.0 → rnapolis-0.10.1}/setup.cfg +0 -0
  9. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/RNApolis.egg-info/SOURCES.txt +0 -0
  10. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/RNApolis.egg-info/dependency_links.txt +0 -0
  11. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/RNApolis.egg-info/entry_points.txt +0 -0
  12. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/RNApolis.egg-info/requires.txt +0 -0
  13. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/RNApolis.egg-info/top_level.txt +0 -0
  14. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/adapter.py +0 -0
  15. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/aligner.py +0 -0
  16. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/annotator.py +0 -0
  17. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/clashfinder.py +0 -0
  18. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/common.py +0 -0
  19. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/component_A.csv +0 -0
  20. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/component_C.csv +0 -0
  21. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/component_G.csv +0 -0
  22. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/component_U.csv +0 -0
  23. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/distiller.py +0 -0
  24. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/metareader.py +0 -0
  25. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/mmcif_pdbx_v50.dic +0 -0
  26. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/molecule_filter.py +0 -0
  27. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/motif_extractor.py +0 -0
  28. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/parser_v2.py +0 -0
  29. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/py.typed +0 -0
  30. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/rfam_folder.py +0 -0
  31. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/splitter.py +0 -0
  32. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/tertiary.py +0 -0
  33. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/tertiary_v2.py +0 -0
  34. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/transformer.py +0 -0
  35. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/unifier.py +0 -0
  36. {rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/util.py +0 -0
  37. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_adapter.py +0 -0
  38. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_annotator.py +0 -0
  39. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_bugfixes.py +0 -0
  40. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_common.py +0 -0
  41. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_metareader.py +0 -0
  42. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_molecule_filter.py +0 -0
  43. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_parser.py +0 -0
  44. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_quadruplexes.py +0 -0
  45. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_rfam_folder.py +0 -0
  46. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_tertiary.py +0 -0
  47. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_transformer.py +0 -0
  48. {rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_v2.py +0 -0
{rnapolis-0.10.0/src/RNApolis.egg-info → rnapolis-0.10.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: RNApolis
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- Version: 0.10.0
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+ Version: 0.10.1
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
{rnapolis-0.10.0 → rnapolis-0.10.1}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md") as f:
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  setup(
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  name="RNApolis",
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- version="0.10.0",
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+ version="0.10.1",
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  packages=["rnapolis"],
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  package_dir={"": "src"},
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  author="Tomasz Zok",
{rnapolis-0.10.0 → rnapolis-0.10.1/src/RNApolis.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: RNApolis
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- Version: 0.10.0
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+ Version: 0.10.1
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  Summary: A Python library containing RNA-related bioinformatics functions and classes
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  Home-page: https://github.com/tzok/rnapolis-py
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  Author: Tomasz Zok
{rnapolis-0.10.0 → rnapolis-0.10.1}/src/rnapolis/parser.py RENAMED
@@ -18,6 +18,9 @@ def read_3d_structure(
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  atoms, modified, sequence_by_entity, is_nucleic_acid_by_entity = (
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  parse_cif(cif_or_pdb) if is_cif(cif_or_pdb) else parse_pdb(cif_or_pdb)
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  )
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+ if not atoms:
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+ logger.warning("No atoms parsed from file, returning empty Structure3D.")
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+ return Structure3D([])
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  available_models = {atom.model: None for atom in atoms}
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  atoms_by_model = {
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  model: list(filter(lambda atom: atom.model == model, atoms))
{rnapolis-0.10.0 → rnapolis-0.10.1}/LICENSE RENAMED
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{rnapolis-0.10.0 → rnapolis-0.10.1}/README.md RENAMED
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{rnapolis-0.10.0 → rnapolis-0.10.1}/pyproject.toml RENAMED
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{rnapolis-0.10.0 → rnapolis-0.10.1}/setup.cfg RENAMED
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{rnapolis-0.10.0 → rnapolis-0.10.1}/tests/test_v2.py RENAMED
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