QAssemble 1.0.0__tar.gz

qassemble-1.0.0/.github/workflows/deploy-mkdocs.yml

@@ -0,0 +1,55 @@
+name: Deploy MkDocs
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - "docs/**"
+      - "mkdocs.yml"
+      - ".github/workflows/deploy-mkdocs.yml"
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+concurrency:
+  group: "pages"
+  cancel-in-progress: true
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install mkdocs mkdocs-material
+
+      - name: Build site
+        run: mkdocs build --strict
+
+      - name: Configure Pages
+        uses: actions/configure-pages@v5
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: site
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

qassemble-1.0.0/.github/workflows/publish.yml

@@ -0,0 +1,38 @@
+name: Publish to PyPI
+
+on:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/project/QAssemble/
+    permissions:
+      contents: read
+      id-token: write
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install build tools
+        run: python -m pip install --upgrade build twine
+
+      - name: Build distributions
+        run: python -m build
+
+      - name: Check distributions
+        run: python -m twine check --strict dist/*
+
+      - name: Publish distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

qassemble-1.0.0/.github/workflows/test.yml

@@ -0,0 +1,97 @@
+name: Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.12"]
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install MPI runtime
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y openmpi-bin libopenmpi-dev
+
+      - name: Install package
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e ".[test]"
+
+      - name: Run tests
+        run: pytest -q -m "not slow"
+
+  reproduce-manuscript:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install package
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e ".[test]"
+
+      - name: Run manuscript reproduction
+        run: pytest -q -m slow
+
+  notebook:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install package
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e ".[test]"
+
+      - name: Execute example notebooks
+        run: python -m pytest -q --nbmake examples/graphene/interactive/*.ipynb
+
+  docs:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install docs dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install mkdocs mkdocs-material
+
+      - name: Build docs
+        run: mkdocs build --strict

qassemble-1.0.0/.gitignore

@@ -0,0 +1,13 @@
+CLAUDE.md
+.serena
+.claude
+.codex
+.vscode
+__pycache__/
+.DS_STORE
+reviewer_response_checklist.md
+*.egg-info/
+.agents
+AGENTS.md
+docs/analysis_plots
+*graphify-out

qassemble-1.0.0/CNAME

@@ -0,0 +1 @@
+www.qassemble.org