PyPI - Pyriod - Versions diffs - 0.3.0__tar.gz → 0.3.2__tar.gz - Mend

Pyriod 0.3.0tar.gz → 0.3.2tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (31) hide show

{pyriod-0.3.0 → pyriod-0.3.2}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: Pyriod
-Version: 0.3.0
+Version: 0.3.2
 Summary: Basic period detection and fitting routines for astronomical time series.
 Home-page: https://github.com/keatonb/Pyriod
 Author: Keaton Bell
@@ -24,14 +24,22 @@ Requires-Dist: ipympl>=0.7
 Requires-Dist: ipywidgets>=8
 Requires-Dist: qgridnext>1.3.1
 Requires-Dist: ipyfilechooser>=0.3.5
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
 # Pyriod
-**IMPORTANT INSTALLATION NOTE:** you must manually install qgrid with conda from the eshard channel as described below.
 Python implementation of basic period detection and fitting routines for astronomical time series.
-<!---Give it a spin before you install [with Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb).--->
+Give it a spin before you install with an example notebook [on Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb). (This can take a while to load!)
 To install, use
@@ -44,20 +52,5 @@ or download the latest (possibly unstable) version from GitHub and run
 Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
 This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.
-Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with
-```conda install -c eshard qgrid```
-Furthermore, Qgrid has specific version requirements for Jupyter (classic only, < v7) and `ipywidgets` (< v8):
-```
-conda install "notebook<7"
-conda install "ipywidgets<8"
-```
-To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
-```
-jupyter nbextension enable --py --sys-prefix qgrid
-jupyter nbextension enable --py --sys-prefix widgetsnbextension
-jupyter nbextension enable --py --sys-prefix ipympl
-```
+Unfortunately Qgrid is no longer supported. We are grateful to @zhihanyue for maintaining [qgridnext](https://github.com/zhihanyue/qgridnext).

{pyriod-0.3.0 → pyriod-0.3.2}/Pyriod/Pyriod.py RENAMED Viewed

@@ -245,8 +245,11 @@ class Pyriod(object):
         self.lc["model"] = initmodel
         # Also plot the model over the time series
         if self.gui:
-            dt = np.min(np.diff(sorted(lc.time.value)))
-            if dt == 0:
+            # Sample the model a bit more finely than the data and through gaps
+            # This can be a problematic amount of sampling through large gaps!
+            # Base the sampling on the highest frequency sampled in the periodogram.
+            dt = 0.5*self.freq_conversion/(np.max(self.freqs))
+            if (dt == 0) or ~np.isfinite(dt):
                 dt = 1. / (24*3600)  # 1s
             tspan = (np.max(lc.time.value) - np.min(lc.time.value))
             osample = 2
@@ -2136,4 +2139,4 @@ class Pyriod(object):
         ax.set_ylim(0, 1)
         ax.set_xlabel(f"frequency ({self.freq_label})")
         ax.set_ylabel('spectral window')
-        return(ax)
+        return(ax)

{pyriod-0.3.0 → pyriod-0.3.2}/Pyriod.egg-info/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: Pyriod
-Version: 0.3.0
+Version: 0.3.2
 Summary: Basic period detection and fitting routines for astronomical time series.
 Home-page: https://github.com/keatonb/Pyriod
 Author: Keaton Bell
@@ -24,14 +24,22 @@ Requires-Dist: ipympl>=0.7
 Requires-Dist: ipywidgets>=8
 Requires-Dist: qgridnext>1.3.1
 Requires-Dist: ipyfilechooser>=0.3.5
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
 # Pyriod
-**IMPORTANT INSTALLATION NOTE:** you must manually install qgrid with conda from the eshard channel as described below.
 Python implementation of basic period detection and fitting routines for astronomical time series.
-<!---Give it a spin before you install [with Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb).--->
+Give it a spin before you install with an example notebook [on Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb). (This can take a while to load!)
 To install, use
@@ -44,20 +52,5 @@ or download the latest (possibly unstable) version from GitHub and run
 Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
 This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.
-Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with
-```conda install -c eshard qgrid```
-Furthermore, Qgrid has specific version requirements for Jupyter (classic only, < v7) and `ipywidgets` (< v8):
-```
-conda install "notebook<7"
-conda install "ipywidgets<8"
-```
-To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
-```
-jupyter nbextension enable --py --sys-prefix qgrid
-jupyter nbextension enable --py --sys-prefix widgetsnbextension
-jupyter nbextension enable --py --sys-prefix ipympl
-```
+Unfortunately Qgrid is no longer supported. We are grateful to @zhihanyue for maintaining [qgridnext](https://github.com/zhihanyue/qgridnext).

{pyriod-0.3.0 → pyriod-0.3.2}/Pyriod.egg-info/SOURCES.txt RENAMED Viewed

@@ -2,7 +2,6 @@ LICENSE
 MANIFEST.in
 README.md
 mkdocs.yml
-postBuild
 requirements.txt
 setup.py
 Pyriod/Pyriod.py

pyriod-0.3.2/README.md ADDED Viewed

@@ -0,0 +1,19 @@
+# Pyriod
+Python implementation of basic period detection and fitting routines for astronomical time series.
+Give it a spin before you install with an example notebook [on Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb). (This can take a while to load!)
+To install, use
+```pip install Pyriod```
+or download the latest (possibly unstable) version from GitHub and run
+```python setup.py install```
+Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
+This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.
+Unfortunately Qgrid is no longer supported. We are grateful to @zhihanyue for maintaining [qgridnext](https://github.com/zhihanyue/qgridnext).

{pyriod-0.3.0 → pyriod-0.3.2}/examples/TESS_DBV_example.ipynb RENAMED Viewed

@@ -13,24 +13,7 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1040: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1095: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1099: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1213: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1216: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1040: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1095: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1099: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1213: SyntaxWarning: invalid escape sequence '\\+'\n",
-      "/opt/anaconda3/lib/python3.12/site-packages/Pyriod-0.2.6-py3.12.egg/Pyriod/Pyriod.py:1216: SyntaxWarning: invalid escape sequence '\\+'\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "%matplotlib widget\n",
     "import lightkurve as lk\n",
@@ -74,7 +57,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "22d00f8f0a7a42e5aa2c96bd2985fc1f",
+       "model_id": "948d59b47070490b91f4445a0fbeaaff",
        "version_major": 2,
        "version_minor": 0
       },
@@ -82,8 +65,9 @@
        "VBox(children=(HTML(value=''), Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home…"
       ]
      },
+     "execution_count": 4,
      "metadata": {},
-     "output_type": "display_data"
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -99,7 +83,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "93eb38729e8745eea36d534c15b6d14c",
+       "model_id": "86105039460d44c987d8ffc10dc7c552",
        "version_major": 2,
        "version_minor": 0
       },
@@ -107,8 +91,9 @@
        "VBox(children=(HTML(value=''), HBox(children=(Text(value='1561.1643943500267', description='Frequency:', place…"
       ]
      },
+     "execution_count": 5,
      "metadata": {},
-     "output_type": "display_data"
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -118,9 +103,25 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 6,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "e542fe0f1861473b93a843f199cd5a97",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "VBox(children=(HTML(value=''), HBox(children=(Button(description='Refine fit', icon='refresh', style=ButtonSty…"
+      ]
+     },
+     "execution_count": 6,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "#Interact with frequency solution\n",
     "pyriod.Signals()"
@@ -128,9 +129,25 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 7,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "3072bdfec04e4d348a92299a9f99b172",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "VBox(children=(Box(children=(HTML(value=\"2024-12-27 15:42:14,053 - INFO - Initiating Pyriod instance 0.<br>\\n2…"
+      ]
+     },
+     "execution_count": 7,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "#Interact with log\n",
     "pyriod.Log()"
@@ -138,13 +155,43 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 8,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "03ab17d9cd854d65ba632b2c10c8dca9",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "Tab(children=(VBox(children=(HTML(value=''), Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view',…"
+      ]
+     },
+     "execution_count": 8,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "#Show all panels in single cell\n",
     "pyriod.Pyriod()"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {

{pyriod-0.3.0 → pyriod-0.3.2}/examples/TSC2_Demo.ipynb RENAMED Viewed

@@ -7,18 +7,13 @@
    "source": [
     "## Pyriod Tutorial: Python Tools for Pre-Whitening Frequency Analysis\n",
     "\n",
-    "This interactive demo shows how to use the new Python package Pyriod to analyze TESS light curves.\n",
+    "This interactive demo shows how to use the new Python package Pyriod to analyze TESS light curves. You can fit generic light curves by constructing a [lightkurve.LightCurve object](https://lightkurve.github.io/lightkurve/reference/lightcurve.html).\n",
     "\n",
     "Run the code in each sequential cell by holding `shift` and hitting `return`.\n",
     "\n",
-    "Note that this notebook will shut down after 10 minutes of inactivity.  [Click here](https://dirac.us/oil) to launch a fresh notebook.\n",
+    "Note that this notebook will shut down after 10 minutes of inactivity.\n",
     "\n",
-    "You can install this package on your own machine with `pip install Pyriod`. Make sure to enable the following Jupyter extensions in the terminal on your own machine (before you start your Jupyter Notebook server!):\n",
-    "```\n",
-    "jupyter nbextension enable --py --sys-prefix qgrid\n",
-    "jupyter nbextension enable --py --sys-prefix widgetsnbextension\n",
-    "jupyter nbextension enable --py --sys-prefix ipympl\n",
-    "```"
+    "You can install this package on your own machine with `pip install Pyriod`."
    ]
   },
   {
@@ -199,13 +194,13 @@
    "id": "99f168bc",
    "metadata": {},
    "source": [
-    "If you experience any issues or have comments or questions, you can email me at keatonb@uw.edu, open an issue [on Github](https://github.com/keatonb/Pyriod/issues), Tweet to [@astrokeat](https://www.twitter.com/astrokeat), or connect with me at the conference!"
+    "If you experience any issues or have comments or questions, you can email me at keaton.bell@qc.cuny.edu, or open an issue [on Github](https://github.com/keatonb/Pyriod/issues)."
    ]
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -219,7 +214,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.7.5"
+   "version": "3.12.2"
   }
  },
  "nbformat": 4,

{pyriod-0.3.0 → pyriod-0.3.2}/setup.py RENAMED Viewed

@@ -8,7 +8,7 @@ with open("requirements.txt", "r") as fh:
 setuptools.setup(
     name="Pyriod",
-    version="0.3.0",
+    version="0.3.2",
     author="Keaton Bell",
     author_email="keatonbell@utexas.edu",
     description="Basic period detection and fitting routines for astronomical time series.",

pyriod-0.3.0/README.md DELETED Viewed

@@ -1,36 +0,0 @@
-# Pyriod
-**IMPORTANT INSTALLATION NOTE:** you must manually install qgrid with conda from the eshard channel as described below.
-Python implementation of basic period detection and fitting routines for astronomical time series.
-<!---Give it a spin before you install [with Binder](https://mybinder.org/v2/gh/keatonb/Pyriod/HEAD?filepath=examples%2FTSC2_Demo.ipynb).--->
-To install, use
-```pip install Pyriod```
-or download the latest (possibly unstable) version from GitHub and run
-```python setup.py install```
-Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
-This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.
-Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with
-```conda install -c eshard qgrid```
-Furthermore, Qgrid has specific version requirements for Jupyter (classic only, < v7) and `ipywidgets` (< v8):
-```
-conda install "notebook<7"
-conda install "ipywidgets<8"
-```
-To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
-```
-jupyter nbextension enable --py --sys-prefix qgrid
-jupyter nbextension enable --py --sys-prefix widgetsnbextension
-jupyter nbextension enable --py --sys-prefix ipympl
-```

pyriod-0.3.0/postBuild DELETED Viewed

@@ -1,4 +0,0 @@
-jupyter contrib nbextension install --user
-jupyter nbextension enable --py --sys-prefix qgrid
-jupyter nbextension enable --py --sys-prefix widgetsnbextension
-jupyter nbextension enable --py --sys-prefix ipympl