Pyriod 0.2.4__tar.gz → 0.2.5__tar.gz

{Pyriod-0.2.4 → Pyriod-0.2.5}/PKG-INFO

@@ -1,12 +1,10 @@
 Metadata-Version: 2.1
 Name: Pyriod
-Version: 0.2.4
+Version: 0.2.5
 Summary: Basic period detection and fitting routines for astronomical time series.
 Home-page: https://github.com/keatonb/Pyriod
 Author: Keaton Bell
 Author-email: keatonbell@utexas.edu
-License: UNKNOWN
-Platform: UNKNOWN
 Classifier: Development Status :: 4 - Beta
 Classifier: Programming Language :: Python
 Classifier: License :: OSI Approved :: GNU General Public License (GPL)
@@ -14,6 +12,18 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.6
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: numpy>=1.11
+Requires-Dist: pandas>=1.0
+Requires-Dist: scipy>=0.19
+Requires-Dist: astropy
+Requires-Dist: lightkurve>=2.1.1
+Requires-Dist: lmfit>=1.0
+Requires-Dist: beautifulsoup4>=4.11
+Requires-Dist: matplotlib>=3.4
+Requires-Dist: ipympl>=0.7
+Requires-Dist: ipywidgets>=7.5
+Requires-Dist: qgrid>=1.3.1
+Requires-Dist: ipyfilechooser>=0.3.5
 
 # Pyriod
 
@@ -32,6 +42,10 @@ or download the latest (possibly unstable) version from GitHub and run
 Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
 
 This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.  
+Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with 
+
+```conda install -c eshard qgrid```
+
 
 To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
 ```
@@ -40,12 +54,3 @@ jupyter nbextension enable --py --sys-prefix widgetsnbextension
 jupyter nbextension enable --py --sys-prefix ipympl
 ```
 
-Thanks to heroic work of [j123github](https://github.com/j123github), Pyriod can now be run in JupyerLab by running
-```
-jupyter labextension install @j123npm/qgrid2@1.1.4
-```
-See [quantopian/qgrid/#356](https://github.com/quantopian/qgrid/pull/356) for details.
-
-This is a serious work in progress with many planned improvements.  Please be patient, but also feel free to request new features by raising GitHub issues.
-
-

{Pyriod-0.2.4 → Pyriod-0.2.5}/Pyriod/Pyriod.py

@@ -1325,10 +1325,10 @@ class Pyriod(object):
 
     def _update_signal_snr(self):
         # Add periods and period uncertainties
-        if ((self.noise_spectrum is not None) & 
+        if ((self.noise_spectrum is not None) &
             (self.significance_multiplier is not None)):
             self.fitvalues['snr'] = (
-                self.amp_conversion * self.fitvalues['amp'] / 
+                self.amp_conversion * self.fitvalues['amp'] /
                 self.noise_spectrum(self.fitvalues['freq']))
 
     def _convert_fitvalues_to_qgrid(self):
@@ -1569,7 +1569,6 @@ class Pyriod(object):
         self.lcfig.canvas.draw_idle()
 
     def _mask_selected_pts(self, event):
-        self.log(event.key, "debug")
         if ((event.key in ["backspace", "delete"]) and (len(self.selector.ind) > 0)):
             self.log("Masking {} selected points.")
             self.lc["include"][self.selector.ind] = 0
@@ -1686,7 +1685,7 @@ class Pyriod(object):
             # Click within either frequency resolution or 1% of displayed range
             # TODO: make this work with log frequency too
             tolerance = np.max([self.fres,
-                                0.01*np.diff(self.perax.get_xlim())])
+                                0.01*np.diff(self.perax.get_xlim())[0]])
             nearby = np.argwhere((self.freqs >= event.xdata - tolerance) &
                                  (self.freqs <= event.xdata + tolerance))
             ydata = self.perplot_resid.get_ydata()
@@ -1704,7 +1703,7 @@ class Pyriod(object):
         significant. There are two parts: self.noise_spectrum is an
         interpolation function for the average (mean or median) amplitude
         calculated in a moving frequency window across the residuals
-        periodogram; and self.significance_multiplier is a scaling factor for 
+        periodogram; and self.significance_multiplier is a scaling factor for
         converting this to a significance threshold.
 
         Parameters
@@ -1752,18 +1751,18 @@ class Pyriod(object):
             inbin = np.where(np.logical_and(self.freqs >= binstart[i],
                                             self.freqs <= binend[i]))
             avgnoise[i] = average(self.per_resid.power.value[inbin])
-        
+
         # Extrapolate if fill_value not specified
         if 'fill_value' not in kwargs.keys():
             kwargs["fill_value"] = "extrapolate"
-        
+
         if len(avgnoise) > 1:
             self.noise_spectrum = interp1d(midbin, avgnoise, bounds_error=False,
                                            **kwargs)
         elif len(avgnoise) == 1:
             self.noise_spectrum = lambda x: avgnoise[0]
         # todo: else more informative error
-            
+
         self.significance_multiplier = multiplier
 
         # Update SNR of fitted signals

{Pyriod-0.2.4 → Pyriod-0.2.5}/Pyriod.egg-info/PKG-INFO

@@ -1,12 +1,10 @@
 Metadata-Version: 2.1
 Name: Pyriod
-Version: 0.2.4
+Version: 0.2.5
 Summary: Basic period detection and fitting routines for astronomical time series.
 Home-page: https://github.com/keatonb/Pyriod
 Author: Keaton Bell
 Author-email: keatonbell@utexas.edu
-License: UNKNOWN
-Platform: UNKNOWN
 Classifier: Development Status :: 4 - Beta
 Classifier: Programming Language :: Python
 Classifier: License :: OSI Approved :: GNU General Public License (GPL)
@@ -14,6 +12,18 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.6
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: numpy>=1.11
+Requires-Dist: pandas>=1.0
+Requires-Dist: scipy>=0.19
+Requires-Dist: astropy
+Requires-Dist: lightkurve>=2.1.1
+Requires-Dist: lmfit>=1.0
+Requires-Dist: beautifulsoup4>=4.11
+Requires-Dist: matplotlib>=3.4
+Requires-Dist: ipympl>=0.7
+Requires-Dist: ipywidgets>=7.5
+Requires-Dist: qgrid>=1.3.1
+Requires-Dist: ipyfilechooser>=0.3.5
 
 # Pyriod
 
@@ -32,6 +42,10 @@ or download the latest (possibly unstable) version from GitHub and run
 Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
 
 This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.  
+Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with 
+
+```conda install -c eshard qgrid```
+
 
 To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
 ```
@@ -40,12 +54,3 @@ jupyter nbextension enable --py --sys-prefix widgetsnbextension
 jupyter nbextension enable --py --sys-prefix ipympl
 ```
 
-Thanks to heroic work of [j123github](https://github.com/j123github), Pyriod can now be run in JupyerLab by running
-```
-jupyter labextension install @j123npm/qgrid2@1.1.4
-```
-See [quantopian/qgrid/#356](https://github.com/quantopian/qgrid/pull/356) for details.
-
-This is a serious work in progress with many planned improvements.  Please be patient, but also feel free to request new features by raising GitHub issues.
-
-

{Pyriod-0.2.4 → Pyriod-0.2.5}/Pyriod.egg-info/requires.txt

@@ -7,6 +7,6 @@ lmfit>=1.0
 beautifulsoup4>=4.11
 matplotlib>=3.4
 ipympl>=0.7
-ipywidgets<8.0,>=7.5
+ipywidgets>=7.5
 qgrid>=1.3.1
 ipyfilechooser>=0.3.5

{Pyriod-0.2.4 → Pyriod-0.2.5}/README.md

@@ -15,6 +15,10 @@ or download the latest (possibly unstable) version from GitHub and run
 Additional documentation is available at [pyriod.readthedocs.io](https://pyriod.readthedocs.io).
 
 This code uses [Qgrid](https://github.com/quantopian/qgrid) and other Jupyter widgets to interactively display the frequency solution.  
+Unfortunately Qgrid is no longer supported. [A version that works with other modern packages](https://anaconda.org/eshard/qgrid) can be installed with 
+
+```conda install -c eshard qgrid```
+
 
 To display the Pyriod GUI, you will need to first enable the following Jupyter notebook extensions in the terminal:
 ```
@@ -23,10 +27,3 @@ jupyter nbextension enable --py --sys-prefix widgetsnbextension
 jupyter nbextension enable --py --sys-prefix ipympl
 ```
 
-Thanks to heroic work of [j123github](https://github.com/j123github), Pyriod can now be run in JupyerLab by running
-```
-jupyter labextension install @j123npm/qgrid2@1.1.4
-```
-See [quantopian/qgrid/#356](https://github.com/quantopian/qgrid/pull/356) for details.
-
-This is a serious work in progress with many planned improvements.  Please be patient, but also feel free to request new features by raising GitHub issues.

{Pyriod-0.2.4 → Pyriod-0.2.5}/requirements.txt

@@ -7,6 +7,6 @@ lmfit>=1.0
 beautifulsoup4>=4.11
 matplotlib>=3.4
 ipympl>=0.7
-ipywidgets>=7.5, <8.0
+ipywidgets>=7.5
 qgrid>=1.3.1
 ipyfilechooser>=0.3.5

{Pyriod-0.2.4 → Pyriod-0.2.5}/setup.py

@@ -8,7 +8,7 @@ with open("requirements.txt", "r") as fh:
 
 setuptools.setup(
     name="Pyriod",
-    version="0.2.4",
+    version="0.2.5",
     author="Keaton Bell",
     author_email="keatonbell@utexas.edu",
     description="Basic period detection and fitting routines for astronomical time series.",
@@ -26,3 +26,5 @@ setuptools.setup(
     python_requires='>=3.6',
     include_package_data=True,
 )
+
+print("IMPORTANT: install qgrid from https://anaconda.org/eshard/qgrid for Pyriod to work with modern environments.")