PycWB 1.1.0b3__tar.gz → 1.1.0b4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/CHANGES.md +22 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PKG-INFO +1 -1
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/PKG-INFO +1 -1
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/SOURCES.txt +29 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/scm_file_list.json +39 -0
- pycwb-1.1.0b4/PycWB.egg-info/scm_version.json +8 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/_version.py +3 -3
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/cli/config_setup.py +68 -13
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/condor/condor.py +61 -83
- pycwb-1.1.0b4/pycwb/modules/condor/cwb.py +466 -0
- pycwb-1.1.0b4/pycwb/modules/condor/tests/test_cwb_condor.py +286 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/config_repo_parser/README.md +141 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/config_repo_parser/__init__.py +4 -1
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/config_repo_parser/config_repo_parser.py +57 -18
- pycwb-1.1.0b4/pycwb/modules/config_repo_parser/cwb.py +377 -0
- pycwb-1.1.0b4/pycwb/modules/config_repo_parser/module.yaml +4 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/config_repo_parser/setup.py +68 -98
- pycwb-1.1.0b4/pycwb/modules/config_repo_parser/template_context.py +82 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/config_repo_parser/tests/test_config_repo_parser.py +44 -0
- pycwb-1.1.0b4/pycwb/modules/config_repo_parser/tests/test_cwb_config_setup_cli.py +254 -0
- pycwb-1.1.0b4/pycwb/modules/config_repo_parser/tests/test_cwb_setup.py +408 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/injection/tests/test_simulation_scheduling_matching.py +11 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/efficiency_metrics.py +14 -4
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/efficiency_plots.py +83 -43
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/evaluate.py +2 -2
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/fake_openbox.py +7 -2
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/far.py +2 -2
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/plot_efficiency.py +3 -3
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report.py +8 -3
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report_builder.py +22 -3
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_bundle.py +183 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_configuration.py +131 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report_context.py +68 -13
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_overviews.py +166 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_parameter_space.py +620 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_plot_style.py +59 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report_plots.py +122 -30
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_render.py +34 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report_sections.py +339 -90
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_sensitivity.py +203 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/report_summaries.py +146 -35
- pycwb-1.1.0b4/pycwb/modules/postprocess/report_waveforms.py +372 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/resume_contracts.py +92 -17
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/simulation_report.py +6 -4
- pycwb-1.1.0b4/pycwb/modules/postprocess/templates/1_ridgeline_banner.svg +1 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/templates/postproduction_report.html.j2 +1284 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/templates/production_configuration.html.j2 +72 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_action_resume.py +17 -7
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_efficiency_reference_contract.py +2 -2
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_foreground_plots.py +82 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_ifar_duration.py +2 -2
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_postproduction_report.py +100 -8
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_report.py +36 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_background_density.py +233 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_bundle.py +131 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_bundle_resume.py +167 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_configuration.py +117 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_overviews.py +71 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_paths.py +38 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_plot_layout.py +281 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_sensitivity.py +146 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_report_streaming_reductions.py +24 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_training_space.py +172 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_report_waveforms.py +291 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/tests/test_resume.py +27 -0
- pycwb-1.1.0b4/pycwb/modules/postprocess/tests/test_workflow_presets.py +540 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/training_report.py +23 -16
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/xgb_heatmap.py +5 -3
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/modules/postprocess/zero_lag.py +4 -1
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/post_production/action_spec.py +3 -1
- pycwb-1.1.0b4/pycwb/post_production/presets.py +358 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/post_production/resume.py +7 -1
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/post_production/workflow.py +4 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/post_production/workflow_config.py +35 -3
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/workflow/execution/executor.py +2 -6
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/workflow/execution/resources.py +41 -3
- pycwb-1.1.0b4/pycwb/workflow/execution/tests/test_memory_accounting.py +134 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/pycwb/workflow/execution/tests/test_variability.py +2 -0
- pycwb-1.1.0b3/PycWB.egg-info/scm_version.json +0 -8
- pycwb-1.1.0b3/pycwb/modules/config_repo_parser/module.yaml +0 -4
- pycwb-1.1.0b3/pycwb/modules/postprocess/report_render.py +0 -24
- pycwb-1.1.0b3/pycwb/modules/postprocess/templates/postproduction_report.html.j2 +0 -999
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/.gitattributes +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/.gitignore +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/CITATION.cff +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/CONTRIBUTING.md +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/LICENSE +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/MANIFEST.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/Makefile +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/dependency_links.txt +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/entry_points.txt +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/requires.txt +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/PycWB.egg-info/top_level.txt +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/README.md +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/SUPPORT.md +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Biorthogonal.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Biorthogonal.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/CMakeLists.txt +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Daubechies.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Daubechies.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/FourierCoefficients.icc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Haar.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Haar.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/LineFilter.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/LineFilter.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Makefile +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Meyer.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Meyer.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Symlet.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Symlet.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmArray.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmArray.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmArraySSE.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmArraySSE.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmObjArray.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/SymmObjArray.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WDM.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WDM.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WDMOverlap.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WDMOverlap.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WaveDWT.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/WaveDWT.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Wavelet.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/Wavelet.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/alm.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/build.sh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/cluster.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/cluster.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/cmake/FindHealpix.cmake +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/cmake/FindeBBH.cmake +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/cmake/install_function.cmake +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/constants.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/detector.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/detector.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/injection.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/injection.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/lossy.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/lossy.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/monster.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/monster.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netcluster.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netcluster.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netevent.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netevent.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netpixel.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/netpixel.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/network.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/network.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/pycwb.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/rdfr.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/rdfr.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/readframe.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/readframe.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/readfrfile.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/readfrfile.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/regression.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/regression.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/skycoord.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/skymap.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/skymap.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/sseries.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/sseries.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/time.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/time.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wat.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watasm.S +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watasm_elf64.o +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watavx.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watbranch.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watfun.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wathash.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watplot.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watplot.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watsse.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wattag.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/waturl.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/watversion.hh.in +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavearray.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavearray.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavecomplex.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavecomplex.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavecor.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavecor.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavefft.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavefft.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavelet_LinkDef.h +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavelinefilter.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wavelinefilter.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/waverdc.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/waverdc.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wseries.cc +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wseries.hh +0 -0
- {pycwb-1.1.0b3 → pycwb-1.1.0b4}/cwb-core/wslice.hh +0 -0
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'and the native cwb_xgboost workflow on merged results.')
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container_image=args.container_image, n_retries=args.n_retries,
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submit=args.submit, list_n_jobs=args.list_n_jobs,
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overwrite=args.force_overwrite,
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)
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if args.list_n_jobs:
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return 0
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# Step 2: Run batch setup to prepare for job submission
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from pycwb.workflow.batch import batch_setup as batch_setup_func
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# Just list the number of jobs
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class HTCondor:
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@@ -140,38 +141,69 @@ pycwb simulation-summary {working_dir}/config/user_parameters.yaml --work-dir={w
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os.chmod(f"{dag_dir}/simulation_summary.sh", 0o755)
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def _job_submit_config(self, script, label, *, n_proc=None, arguments=None):
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"""Common submit settings for both PycWB and native cWB workers."""
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config = {
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"initialdir": self.working_dir,
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"executable": os.path.join(self.dag_dir, script),
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"should_transfer_files": "no",
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"output": f"log/{label}.out",
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"error": f"log/{label}.err",
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"log": f"log/{label}.log",
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"accounting_group": self.accounting_group,
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"accounting_group_user": getpass.getuser(),
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"request_cpus": str(self.n_proc if n_proc is None else n_proc),
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"request_memory": self.memory,
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"request_disk": self.disk,
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"use_oauth_services": "scitokens",
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"environment": "BEARER_TOKEN_FILE=$$(CondorScratchDir)/.condor_creds/scitokens.use",
|
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}
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if arguments is not None:
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config["arguments"] = arguments
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+
return config
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+
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+
def _configure_submit_descriptions(self, descriptions):
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+
"""Apply machine placement and container requirements consistently."""
|
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168
|
+
hostname = socket.gethostname().split(".", 1)[0].lower()
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for config in descriptions:
|
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if (
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+
self.conda_env
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+
and not self.container_image
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+
and re.fullmatch(r"(?:citlogin[0-9]+|ldas-grid|ldas-pcdev[0-9]+)", hostname)
|
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+
):
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+
config["MY.flock_local"] = True
|
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config["MY.DESIRED_Sites"] = "none"
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config["requirements"] = "(TARGET.EPNFS =?= True)"
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+
if self.container_image:
|
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+
config["universe"] = "container"
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config["container_image"] = self.container_image
|
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+
requirements = [config.get("requirements", ""), self.requirements]
|
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|
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if self.container_image and self.container_image.endswith(".sif"):
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requirements.append("(TARGET.HAS_SINGULARITY =?= True) && (TARGET.SINGULARITY_CAN_USE_SIF =?= True)")
|
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+
if any(requirements):
|
|
185
|
+
config["requirements"] = " && ".join(f"({item})" for item in requirements if item)
|
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|
+
|
|
187
|
+
def _write_submit_descriptions(self, descriptions):
|
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|
+
# htcondor2 versions differ on whether str(Submit) includes queue.
|
|
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|
+
for name, description in descriptions:
|
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|
+
with open(os.path.join(self.dag_dir, f"{name}.sub"), "w") as stream:
|
|
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|
+
stream.write("".join(f"{key} = {value}\n" for key, value in description.items()))
|
|
192
|
+
stream.write("queue\n")
|
|
193
|
+
|
|
143
194
|
def generate_condor_dag(self, job_segments, has_simulations=False):
|
|
144
|
-
import getpass
|
|
145
195
|
import htcondor2 as htcondor
|
|
146
196
|
from htcondor2 import dags
|
|
147
197
|
|
|
148
198
|
working_dir = self.working_dir
|
|
149
199
|
dag_dir = self.dag_dir
|
|
150
|
-
accounting_group = self.accounting_group
|
|
151
200
|
job_per_worker = self.job_per_worker
|
|
152
|
-
container_image = self.container_image
|
|
153
201
|
should_transfer_files = self.should_transfer_files
|
|
154
202
|
|
|
155
203
|
os.makedirs(dag_dir, exist_ok=True)
|
|
156
204
|
|
|
157
205
|
# create the submit description for the batch job
|
|
158
|
-
batch_job_config =
|
|
159
|
-
"universe": "vanilla",
|
|
160
|
-
"initialdir": working_dir,
|
|
161
|
-
"executable": os.path.join(dag_dir, "run.sh"),
|
|
162
|
-
"arguments": "$(jobs)", # Passing jobs as an argument
|
|
163
|
-
"should_transfer_files": "no",
|
|
164
|
-
"output": "log/batch-$(jobs).out",
|
|
165
|
-
"error": "log/batch-$(jobs).err",
|
|
166
|
-
"log": "log/batch-$(jobs).log",
|
|
167
|
-
"accounting_group": accounting_group,
|
|
168
|
-
"accounting_group_user": getpass.getuser(),
|
|
169
|
-
"request_cpus": f"{self.n_proc}",
|
|
170
|
-
"request_memory": self.memory,
|
|
171
|
-
"request_disk": self.disk,
|
|
172
|
-
"use_oauth_services": "scitokens",
|
|
173
|
-
"environment": "BEARER_TOKEN_FILE=$$(CondorScratchDir)/.condor_creds/scitokens.use",
|
|
174
|
-
}
|
|
206
|
+
batch_job_config = self._job_submit_config("run.sh", "batch-$(jobs)", arguments="$(jobs)")
|
|
175
207
|
|
|
176
208
|
if self.gpus:
|
|
177
209
|
batch_job_config["request_gpus"] = str(self.gpus)
|
|
@@ -180,65 +212,11 @@ pycwb simulation-summary {working_dir}/config/user_parameters.yaml --work-dir={w
|
|
|
180
212
|
for key in ("arguments", "output", "error", "log"):
|
|
181
213
|
batch_job_config[key] = batch_job_config[key].replace("$(jobs)", "$(batch_id)")
|
|
182
214
|
|
|
183
|
-
merge_job_config =
|
|
184
|
-
"universe": "vanilla",
|
|
185
|
-
"initialdir": working_dir,
|
|
186
|
-
"executable": os.path.join(dag_dir, "merge.sh"),
|
|
187
|
-
"should_transfer_files": "no",
|
|
188
|
-
"log": "log/merge.log",
|
|
189
|
-
"output": "log/merge.out",
|
|
190
|
-
"error": "log/merge.err",
|
|
191
|
-
"accounting_group": accounting_group,
|
|
192
|
-
"accounting_group_user": getpass.getuser(),
|
|
193
|
-
"request_cpus": f"{self.n_proc}",
|
|
194
|
-
"request_memory": self.memory,
|
|
195
|
-
"request_disk": self.disk,
|
|
196
|
-
"use_oauth_services": "scitokens",
|
|
197
|
-
"environment": "BEARER_TOKEN_FILE=$$(CondorScratchDir)/.condor_creds/scitokens.use",
|
|
198
|
-
}
|
|
199
|
-
|
|
200
|
-
# Simulation summary job: lightweight, no file transfer needed — runs in
|
|
201
|
-
# parallel with the analysis jobs using only the shared filesystem config.
|
|
202
|
-
sim_summary_job_config = {
|
|
203
|
-
"universe": "vanilla",
|
|
204
|
-
"initialdir": working_dir,
|
|
205
|
-
"executable": os.path.join(dag_dir, "simulation_summary.sh"),
|
|
206
|
-
"should_transfer_files": "no",
|
|
207
|
-
"log": "log/simulation_summary.log",
|
|
208
|
-
"output": "log/simulation_summary.out",
|
|
209
|
-
"error": "log/simulation_summary.err",
|
|
210
|
-
"accounting_group": accounting_group,
|
|
211
|
-
"accounting_group_user": getpass.getuser(),
|
|
212
|
-
"request_cpus": "1",
|
|
213
|
-
"request_memory": self.memory,
|
|
214
|
-
"request_disk": self.disk,
|
|
215
|
-
"use_oauth_services": "scitokens",
|
|
216
|
-
"environment": "BEARER_TOKEN_FILE=$$(CondorScratchDir)/.condor_creds/scitokens.use",
|
|
217
|
-
}
|
|
218
|
-
|
|
219
|
-
if self.conda_env:
|
|
220
|
-
# These scheduling options are specific to the LIGO cluster.
|
|
221
|
-
hostname = socket.gethostname().split(".", 1)[0].lower()
|
|
222
|
-
if re.fullmatch(r"(?:citlogin[0-9]+|ldas-grid|ldas-pcdev[0-9]+)", hostname):
|
|
223
|
-
for job_config in (batch_job_config, merge_job_config, sim_summary_job_config):
|
|
224
|
-
job_config["MY.flock_local"] = True
|
|
225
|
-
job_config["MY.DESIRED_Sites"] = "none"
|
|
226
|
-
job_config["requirements"] = "(TARGET.EPNFS =?= True)"
|
|
215
|
+
merge_job_config = self._job_submit_config("merge.sh", "merge")
|
|
227
216
|
|
|
228
|
-
|
|
229
|
-
|
|
230
|
-
|
|
231
|
-
merge_job_config['universe'] = 'container'
|
|
232
|
-
merge_job_config['container_image'] = container_image
|
|
233
|
-
sim_summary_job_config['universe'] = 'container'
|
|
234
|
-
sim_summary_job_config['container_image'] = container_image
|
|
235
|
-
|
|
236
|
-
for job_config in (batch_job_config, merge_job_config, sim_summary_job_config):
|
|
237
|
-
requirements = [job_config.get("requirements", ""), self.requirements]
|
|
238
|
-
if container_image and container_image.endswith(".sif"):
|
|
239
|
-
requirements.append("(TARGET.HAS_SINGULARITY =?= True) && (TARGET.SINGULARITY_CAN_USE_SIF =?= True)")
|
|
240
|
-
if any(requirements):
|
|
241
|
-
job_config["requirements"] = " && ".join(f"({item})" for item in requirements if item)
|
|
217
|
+
# Simulation summary runs in parallel with the analysis jobs.
|
|
218
|
+
sim_summary_job_config = self._job_submit_config("simulation_summary.sh", "simulation_summary", n_proc=1)
|
|
219
|
+
self._configure_submit_descriptions((batch_job_config, merge_job_config, sim_summary_job_config))
|
|
242
220
|
|
|
243
221
|
if should_transfer_files:
|
|
244
222
|
# Transfer only this job's own catalog and progress fragments.
|
|
@@ -394,16 +372,16 @@ pycwb simulation-summary {working_dir}/config/user_parameters.yaml --work-dir={w
|
|
|
394
372
|
descriptions = [("pycwb_batch", batch_job), ("merge", merge_job)]
|
|
395
373
|
if sim_summary_job is not None:
|
|
396
374
|
descriptions.append(("simulation_summary", sim_summary_job))
|
|
397
|
-
|
|
398
|
-
with open(os.path.join(dag_dir, f"{name}.sub"), "w") as stream:
|
|
399
|
-
stream.write("".join(f"{key} = {value}\n" for key, value in description.items()))
|
|
400
|
-
stream.write("queue\n")
|
|
375
|
+
self._write_submit_descriptions(descriptions)
|
|
401
376
|
|
|
402
377
|
print(f'DAG directory: {dag_dir}')
|
|
403
378
|
print(f'DAG description file: {dag_file}')
|
|
404
379
|
|
|
405
380
|
self.dag_file = dag_file
|
|
406
381
|
|
|
382
|
+
def _dag_submit_options(self):
|
|
383
|
+
return {"force": 1, "import_env": 0}
|
|
384
|
+
|
|
407
385
|
def submit_condor_dag(self):
|
|
408
386
|
import htcondor2 as htcondor
|
|
409
387
|
|
|
@@ -412,7 +390,7 @@ pycwb simulation-summary {working_dir}/config/user_parameters.yaml --work-dir={w
|
|
|
412
390
|
|
|
413
391
|
# CONFIG paths are relative to the submission directory.
|
|
414
392
|
os.chdir(dag_dir)
|
|
415
|
-
dag_submit = htcondor.Submit.from_dag(str(self.dag_file),
|
|
393
|
+
dag_submit = htcondor.Submit.from_dag(str(self.dag_file), self._dag_submit_options())
|
|
416
394
|
print('------------------------')
|
|
417
395
|
print(dag_submit)
|
|
418
396
|
print('------------------------')
|