PycWB 0.29.0__tar.gz → 0.30.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pycwb-0.29.0 → pycwb-0.30.0}/PKG-INFO +6 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/PycWB.egg-info/PKG-INFO +6 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/PycWB.egg-info/SOURCES.txt +34 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/PycWB.egg-info/requires.txt +5 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/likelihood/README.md +2 -2
- pycwb-0.30.0/benchmark/likelihood/data_generator.py +154 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/likelihood/performance_test_opt_sky.py +31 -15
- {pycwb-0.29.0/benchmark/supercluster → pycwb-0.30.0/benchmark/likelihood}/user_parameters_injection.yaml +4 -13
- {pycwb-0.29.0 → pycwb-0.30.0}/bin/pycwb +7 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/network.cc +16 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/pycwb.hh +4 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/source/mod_cwb.rst +25 -0
- pycwb-0.30.0/examples/GW190521_search/README.md +16 -0
- pycwb-0.30.0/examples/GW190521_search/user_parameters.yaml +95 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/README.md +64 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/analyze_events.ipynb +2632 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/injection_parameters.py +18 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/input/LIGO_zero_det_HP.txt +3000 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/input/aligo_O4high.txt +2736 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/input/avirgo_O4high_NEW.txt +3000 -0
- pycwb-0.30.0/examples/new_injection_infra_with_LHV/user_parameters.yaml +100 -0
- pycwb-0.30.0/examples/new_injection_infra_with_gaussian_noise/README.md +55 -0
- pycwb-0.30.0/examples/new_injection_infra_with_gaussian_noise/injection_parameters.py +18 -0
- pycwb-0.30.0/examples/new_injection_infra_with_gaussian_noise/user_parameters.yaml +95 -0
- pycwb-0.30.0/examples/new_injection_infra_with_real_data/README.md +39 -0
- pycwb-0.30.0/examples/new_injection_infra_with_real_data/injection_parameters.py +18 -0
- pycwb-0.30.0/examples/new_injection_infra_with_real_data/user_parameters.yaml +106 -0
- pycwb-0.30.0/examples/new_injection_infra_with_sky_patch/README.md +61 -0
- pycwb-0.30.0/examples/new_injection_infra_with_sky_patch/analyze_events.ipynb +195 -0
- pycwb-0.30.0/examples/new_injection_infra_with_sky_patch/injection_parameters.py +18 -0
- pycwb-0.30.0/examples/new_injection_infra_with_sky_patch/input/aligo_O4high.txt +2736 -0
- pycwb-0.30.0/examples/new_injection_infra_with_sky_patch/user_parameters.yaml +104 -0
- pycwb-0.30.0/examples/sine_gaussian_injection/README.md +22 -0
- pycwb-0.30.0/examples/sine_gaussian_injection/injection_parameters.py +64 -0
- pycwb-0.30.0/examples/sine_gaussian_injection/user_parameters.yaml +107 -0
- pycwb-0.30.0/examples/white_noise_burst_injection/README.md +28 -0
- pycwb-0.30.0/examples/white_noise_burst_injection/injection_parameters.py +92 -0
- pycwb-0.30.0/examples/white_noise_burst_injection/user_parameters.yaml +109 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/_version.py +16 -3
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/cli/batch_setup.py +16 -1
- pycwb-0.30.0/pycwb/cli/gwosc_data.py +46 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/cli/run.py +22 -2
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/constants/detectors.py +17 -4
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/coherence/coherence.py +5 -0
- pycwb-0.30.0/pycwb/modules/cwb_conversions/detector.py +27 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/cwb_conversions/series.py +42 -10
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/cwb_conversions/sparse_series.py +3 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/data_conditioning/data_conditioning.py +1 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/data_conditioning/regression.py +1 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/data_conditioning/whitening_cwb.py +1 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/data_conditioning/whitening_mesa.py +69 -24
- pycwb-0.30.0/pycwb/modules/gwosc/utils.py +92 -0
- pycwb-0.30.0/pycwb/modules/injection/inj_generators.py +71 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/injection/injection.py +8 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/injection/par_generator.py +4 -4
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/injection/sky_distribution.py +48 -9
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/job_segment/job_segment.py +15 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/likelihood/likelihood.py +1 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/likelihoodWP/dpf.py +42 -10
- pycwb-0.30.0/pycwb/modules/likelihoodWP/likelihood.py +830 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/likelihoodWP/sky_stat.py +162 -25
- pycwb-0.30.0/pycwb/modules/likelihoodWP/typing.py +95 -0
- pycwb-0.30.0/pycwb/modules/likelihoodWP/utils.py +983 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/read_data/data_check.py +0 -3
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/read_data/mdc.py +24 -14
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/modules/super_cluster/supercluster.py +2 -2
- pycwb-0.30.0/pycwb/modules/xtalk/type.py +54 -0
- pycwb-0.30.0/pycwb/types/detector.py +541 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/types/network.py +9 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/types/time_frequency_series.py +14 -3
- pycwb-0.30.0/pycwb/types/time_series.py +80 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/types/wdm.py +44 -3
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/utils/conversions/timeseries.py +8 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/utils/parser.py +9 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/workflow/batch.py +2 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/workflow/run.py +3 -1
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/workflow/subflow/prepare_job_runs.py +56 -5
- {pycwb-0.29.0 → pycwb-0.30.0}/pycwb/workflow/subflow/process_job_segment.py +6 -6
- {pycwb-0.29.0 → pycwb-0.30.0}/setup.py +5 -0
- pycwb-0.29.0/benchmark/likelihood/generate_data_for_likelihood.py +0 -113
- pycwb-0.29.0/pycwb/modules/likelihoodWP/likelihood.py +0 -326
- pycwb-0.29.0/pycwb/modules/likelihoodWP/utils.py +0 -214
- pycwb-0.29.0/pycwb/types/detector.py +0 -112
- {pycwb-0.29.0 → pycwb-0.30.0}/.gitignore +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/.gitlab-ci.yml +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/.readthedocs.yaml +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/LICENSE +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/MANIFEST.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/Makefile +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/PycWB.egg-info/dependency_links.txt +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/PycWB.egg-info/top_level.txt +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/README.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/README.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/io_performance/README.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/io_performance/data_gen.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/io_performance/parquet_perf.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/io_performance/parquet_read_perf.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/io_performance/read_pref.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/likelihood/perf_cuda.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/likelihood/performance_test_dpf.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/supercluster/README.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/supercluster/generate_data.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/supercluster/generate_data_2.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/benchmark/supercluster/performance_supercluster.py +0 -0
- {pycwb-0.29.0/benchmark/likelihood → pycwb-0.30.0/benchmark/supercluster}/user_parameters_injection.yaml +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/bin/pycwb_search +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/bin/pycwb_show +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Biorthogonal.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Biorthogonal.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/CMakeLists.txt +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Daubechies.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Daubechies.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/FourierCoefficients.icc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Haar.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Haar.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/LineFilter.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/LineFilter.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Makefile +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Meyer.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Meyer.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Symlet.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Symlet.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmArray.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmArray.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmArraySSE.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmArraySSE.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmObjArray.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/SymmObjArray.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WDM.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WDM.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WDMOverlap.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WDMOverlap.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WaveDWT.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/WaveDWT.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Wavelet.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/Wavelet.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/alm.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/build.sh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/cluster.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/cluster.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/cmake/FindHealpix.cmake +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/cmake/FindeBBH.cmake +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/cmake/install_function.cmake +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/constants.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/detector.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/detector.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/injection.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/injection.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/lossy.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/lossy.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/monster.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/monster.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netcluster.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netcluster.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netevent.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netevent.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netpixel.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/netpixel.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/network.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/rdfr.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/rdfr.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/readframe.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/readframe.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/readfrfile.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/readfrfile.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/regression.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/regression.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/skycoord.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/skymap.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/skymap.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/sseries.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/sseries.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/time.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/time.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wat.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watasm.S +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watasm_elf64.o +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watavx.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watbranch.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watfun.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wathash.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watplot.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watplot.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watsse.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wattag.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/waturl.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/watversion.hh.in +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavearray.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavearray.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavecomplex.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavecomplex.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavecor.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavecor.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavefft.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavefft.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavelet_LinkDef.h +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavelinefilter.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wavelinefilter.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/waverdc.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/waverdc.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wseries.cc +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wseries.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/cwb-core/wslice.hh +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/0.installation_guide.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/1.initialisation_guide.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/2.test_interactive_multistages_2G_analysis.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/3.run_pycwb_with_yaml_config.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/4.py_cwb_inet_2G.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/5.cwb2G_analyse.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/6.wat_codes_notes.md +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/Makefile +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/diagram.py +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/make.bat +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/source/_static/.keep +0 -0
- {pycwb-0.29.0 → pycwb-0.30.0}/docs/source/_templates/.keep +0 -0
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## Prepare the test data for the script
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Run the
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Run the user parameter file with the customized processor `data_generator.py`
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```bash
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pycwb run user_parameters_injection.yaml
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```
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A `test_data.pkl` file will be generated for all the Python variables required for likelihood benchmark.
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import logging
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import os
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import psutil
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from copy import copy
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from pycwb.config import Config
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from pycwb.modules.super_cluster.super_cluster import supercluster_wrapper
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from pycwb.modules.super_cluster.supercluster import supercluster
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from pycwb.modules.xtalk.monster import load_catalog
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from pycwb.modules.coherence.coherence import coherence
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from pycwb.modules.read_data import generate_injections, generate_noise_for_job_seg, read_from_job_segment, check_and_resample
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from pycwb.modules.data_conditioning import data_conditioning
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from pycwb.types.job import WaveSegment
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from pycwb.types.network import Network
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from pycwb.modules.workflow_utils.job_setup import print_job_info
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logger = logging.getLogger(__name__)
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def process_job_segment(working_dir: str, config: Config, job_seg: WaveSegment, compress_json: bool = True,
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catalog_file: str = None, queue=None, production_mode: bool = False, skip_lags: list = None):
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"""
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The core workflow to process single job segment with trails or lags.
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Parameters
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----------
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working_dir : str
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The working directory for the run
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config : Config
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The configuration object
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job_seg : WaveSegment
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The job segment to process
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compress_json : bool
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Whether to compress the json files
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catalog_file : str
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The catalog file to save the triggers
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queue : Queue
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The queue to send the triggers to the collector for saving in production mode
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production_mode : bool
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Whether to run in production mode, if True, the triggers will be sent to the queue instead of saving them in this function
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skip_lags : list
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The options to skip certain lags. It is used for resuming the processing after a crash
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"""
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print_job_info(job_seg)
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if not job_seg.frames and not job_seg.noise and not job_seg.injections:
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raise ValueError("No data to process")
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base_data = None
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if job_seg.frames:
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base_data = read_from_job_segment(config, job_seg)
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if job_seg.noise:
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base_data = generate_noise_for_job_seg(job_seg, config.inRate, data=base_data)
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data = base_data
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# get all the trail_idx from the injections, if there is no injections, use 0
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trail_idxs = {0}
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if job_seg.injections:
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trail_idxs = set([injection.get('trail_idx', 0) for injection in job_seg.injections])
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# loop over all the trail_idx, if there is no injections or only one trail, only loop once for trail_idx=0
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for trail_idx in trail_idxs:
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if job_seg.injections:
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# use sub_job_seg for each trail_idx to avoid passing the trail_idx to the following functions,
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sub_job_seg = copy(job_seg)
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sub_job_seg.injections = [injection for injection in job_seg.injections if injection.get('trail_idx', 0) == trail_idx]
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logger.info(f"Processing trail_idx: {trail_idx} with {len(sub_job_seg.injections)} injections: {sub_job_seg.injections}")
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data = generate_injections(config, sub_job_seg, base_data)
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else:
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logger.info(f"Processing trail_idx: {trail_idx} without injections")
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sub_job_seg = job_seg
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# add trail_idx to the sub_job_seg
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sub_job_seg.trail_idx = trail_idx
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# check and resample the data
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data = [check_and_resample(data[i], config, i) for i in range(len(job_seg.ifos))]
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logger.info("Memory usage: %f.2 MB", psutil.Process().memory_info().rss / 1024 / 1024)
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# data conditioning
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tf_maps, nRMS_list = data_conditioning(config, data)
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logger.info("Memory usage: %f.2 MB", psutil.Process().memory_info().rss / 1024 / 1024)
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# initialize network object
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network = Network(config, tf_maps, nRMS_list)
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# coherence
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fragment_clusters = coherence(config, tf_maps, nRMS_list, net=network)
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logger.info("Memory usage: %f.2 MB", psutil.Process().memory_info().rss / 1024 / 1024)
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# supercluster
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if config.use_root_supercluster:
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super_fragment_clusters = supercluster(config, network, fragment_clusters, tf_maps)
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else:
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xtalk_coeff, xtalk_lookup_table, layers, _ = load_catalog(config.MRAcatalog)
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super_fragment_clusters = supercluster_wrapper(config, network, fragment_clusters, tf_maps,
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xtalk_coeff, xtalk_lookup_table, layers)
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logger.info("Memory usage: %f.2 MB", psutil.Process().memory_info().rss / 1024 / 1024)
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# only dump the first supercluster
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d = super_fragment_clusters[0]
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from pycwb.modules.cwb_conversions import convert_fragment_clusters_to_netcluster, convert_netcluster_to_fragment_clusters
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pwc = network.get_cluster(0)
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wdm_list = network.get_wdm_list()
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for wdm in wdm_list:
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wdm.setTDFilter(config.TDSize, config.upTDF)
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# load delay index
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network.set_delay_index(config.TDRate)
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# load time delay data
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pwc.cpf(convert_fragment_clusters_to_netcluster(d.dump_cluster(0)), False)
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pwc.setcore(False, 1)
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pwc.loadTDampSSE(network.net, 'a', config.BATCH, config.BATCH)
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from pycwb.modules.likelihoodWP.likelihood import load_data_from_ifo
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import numpy as np
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acor = network.net.acor
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network_energy_threshold = 2 * acor * acor * config.nIFO
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gamma_regulator = network.net.gamma * network.net.gamma * 2 / 3
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delta_regulator = abs(network.net.delta) if abs(network.net.delta) < 1 else 1
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REG = [delta_regulator * np.sqrt(2), 0, 0]
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netEC_threshold = network.net.netRHO * network.net.netRHO * 2
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n_sky = network.net.index.size()
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ml, FP, FX = load_data_from_ifo(network, config.nIFO)
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cluster_test = convert_netcluster_to_fragment_clusters(pwc)
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pixels = cluster_test.clusters[0].pixels
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# save FP, FX, rms, n_sky, gamma_regulator, network_energy_threshold to pickle
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test_data = {
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'FP': FP,
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'FX': FX,
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'cluster': cluster_test.clusters[0],
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'pixels': pixels,
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'n_ifo': config.nIFO,
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'ml': ml,
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'n_sky': n_sky,
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'delta_regulator': delta_regulator,
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'gamma_regulator': gamma_regulator,
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'netEC_threshold': netEC_threshold,
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'network_energy_threshold': network_energy_threshold,
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'netCC': network.net.netCC,
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}
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import pickle
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with open('test_data.pkl', 'wb') as f:
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pickle.dump(test_data, f)
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# add .. to path[0]
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import sys, os
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sys.path.insert(0, '
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sys.path.insert(0, '../..')
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import pickle
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from math import sqrt
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import numpy as np
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from pycwb.modules.likelihoodWP.likelihood import calculate_dpf, find_optimal_sky_localization, calculate_sky_statistics
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from pycwb.modules.likelihoodWP.likelihood import load_data_from_pixels
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from pycwb.modules.likelihoodWP.likelihood import load_data_from_pixels, threshold_cut, fill_detection_statistic
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from pycwb.modules.xtalk.monster import load_catalog, getXTalk_pixels
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from pycwb.modules.xtalk.type import XTalk
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from pycwb.modules.likelihoodWP.typing import SkyMapStatistics
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import time
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#################################################################################
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FX = test_data['FX']
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ml = test_data['ml']
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n_sky = test_data['n_sky']
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cluster = test_data['cluster']
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pixels = test_data['pixels']
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gamma_regulator = test_data['gamma_regulator']
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delta_regulator = test_data['delta_regulator']
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network_energy_threshold = test_data['network_energy_threshold']
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netCC = test_data['netCC']
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n_ifo = test_data['n_ifo']
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netEC_threshold = test_data['netEC_threshold']
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REG = np.array([delta_regulator * sqrt(2), 0., 0.])
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rms, td00, td90, td_energy = load_data_from_pixels(pixels, n_ifo)
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#####################
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# Load xtalk catalog
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#####################
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print('Please set HOME_WAT_FILTERS to the directory of WAT filters')
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exit(1)
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fn = f"{os.environ.get('HOME_WAT_FILTERS')}/wdmXTalk/OverlapCatalog16-1024.bin"
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fn = f"./wdmXTalk/OverlapCatalog16-1024.bin"
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start_time = time.time()
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xtalk_coeff, xtalk_lookup_table, layers, nRes = load_catalog(fn)
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# xtalk_coeff, xtalk_lookup_table, layers, nRes = load_catalog(fn)
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xtalk = XTalk.load(fn)
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print(f"Time for load_catalog: {time.time() - start_time} s")
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#######################
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# Get xtalk for pixels
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#######################
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cluster_xtalk_lookup, cluster_xtalk =
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cluster_xtalk_lookup, cluster_xtalk = xtalk.get_xtalk_pixels(pixels, True)
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#############################################
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# Convert FP, FX, rms, td00, td90 to float32
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@@ -63,20 +64,35 @@ rms = rms.T.astype(np.float32)
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#############################################
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REG[1] = calculate_dpf(FP, FX, rms, n_sky, n_ifo, gamma_regulator, network_energy_threshold)
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skymap_statistics = find_optimal_sky_localization(n_ifo, n_pix, n_sky, FP, FX, rms, td00, td90, ml, REG, netCC, delta_regulator,
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network_energy_threshold)
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skymap_statistics = SkyMapStatistics.from_tuple(skymap_statistics)
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#############################################
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# Calculate sky statistics
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#############################################
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calculate_sky_statistics(l_max, n_ifo, n_pix, FP, FX, rms, td00, td90, ml, REG, network_energy_threshold, cluster_xtalk,
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cluster_xtalk_lookup)
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sky_statistics = calculate_sky_statistics(skymap_statistics.l_max, n_ifo, n_pix, FP, FX, rms, td00, td90, ml, REG, network_energy_threshold, cluster_xtalk,
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cluster_xtalk_lookup, DEBUG=True)
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rejected = threshold_cut(sky_statistics, network_energy_threshold, netEC_threshold)
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if rejected:
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print(f"Cluster rejected due to threshold cuts: {rejected}")
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fill_detection_statistic(sky_statistics, skymap_statistics, cluster=cluster,
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n_ifo=n_ifo, xtalk=xtalk,
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network_energy_threshold=network_energy_threshold)
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# Eo = 8255.51, Lo = 7805.59, Ep = 1552.52, Lp = 1467.77
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# Gn = 83.9425, Ec = 7571.68, Dc = 0.441406, Rc = 0.999999, Eh = 9.45466
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print(f"expected Eo: 8255.51, Lo: 7805.59, Ep: 1552.52, Lp: 1467.77")
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print(f"expected Gn: 83.9425, Ec: 7571.68, Dc: 0.441406, Rc: 0.999999, Eh: 9.45466, Es: 0, NC: 369, NS: 368")
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print(f"expected N = 83.0302, N2 = 83.9448")
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print(f"expected Np = 70.9542, Em = 1676.79, Lm = 1521.89, norm = 4.91776, Ec = 1539.66, Dc = 0.0897575, ch = 0.932774")
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print(f"expected cc = 1, rho = 27.7458, ecor = 1.4013e-45, penalty = 2.92971e-33, xrho = 4.2039e-45")
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#############################################
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# Performance test
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#############################################
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-
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exit()
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total_time = 0
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# # convert FP, FX, rms to float32
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for i in range(10):
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###### project ######
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outputDir: "output"
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nproc:
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nproc: 1
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###### search ######
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#calibVer: "C01"
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# simulation
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simulation: "all_inject_in_one_segment"
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nfactor: 1
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segment_processer: ./data_generator.process_job_segment
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injection:
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segment:
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noise:
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seeds: [1002, 1004]
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parameters:
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- mass1: 20
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mass2: 20
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spin1z: 0
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spin2z: 0
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distance: 1000
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-
inclination: 0
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polarization: 0
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-
gps_time: 1126259462.4
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-
coa_phase: 0
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-
ra: 0
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-
dec: 0
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91
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- mass1: 36
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mass2: 29
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spin1x: 0.3
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@@ -100,5 +90,6 @@ injection:
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90
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coa_phase: 0
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ra: 0
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dec: 0
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+
pol: 0
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f_lower: 16
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approximant: "IMRPhenomXPHM"
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-
approximant: "IMRPhenomXHM"
|
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@@ -13,6 +13,7 @@ import pycwb.cli.xtalk as xtalk
|
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13
13
|
import pycwb.cli.merge_catalog as merge_catalog
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14
14
|
import pycwb.cli.post_process as post_process
|
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15
15
|
import pycwb.cli.gwosc as gwosc
|
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16
|
+
import pycwb.cli.gwosc_data as gwosc_data
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16
17
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import pycwb.cli.get_external_modules as get_external_modules
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17
18
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|
def main():
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@@ -53,11 +54,16 @@ def main():
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53
54
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post_process.init_parser(post_process_parser)
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54
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post_process_parser.set_defaults(func=post_process.command)
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55
56
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56
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-
#gwosc subcommand
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57
|
+
# gwosc subcommand
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57
58
|
gwosc_parser = subparsers.add_parser('gwosc', help='Download files to run a pycwb analysis of a GW event of your choice')
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58
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gwosc.init_parser(gwosc_parser)
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gwosc_parser.set_defaults(func=gwosc.command)
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60
61
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62
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+
# gwosc_data subcommand
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63
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+
gwosc_data_parser = subparsers.add_parser('gwosc-data', help='Download data files to run a pycwb analysis with user parameters')
|
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64
|
+
gwosc_data.init_parser(gwosc_data_parser)
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65
|
+
gwosc_data_parser.set_defaults(func=gwosc_data.command)
|
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66
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+
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61
67
|
# get_external_modules subcommand
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62
68
|
get_external_modules_parser = subparsers.add_parser('get-external-modules', help='Get external modules')
|
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63
69
|
get_external_modules.init_parser(get_external_modules_parser)
|
|
@@ -69,6 +69,22 @@ network::network(const network& value)
|
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69
69
|
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|
70
70
|
network::~network()
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|
71
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|
{
|
|
72
|
+
// Delete detector pointers
|
|
73
|
+
for (detector* d : ifoList) {
|
|
74
|
+
delete d;
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
// Delete WDM pointers
|
|
78
|
+
for (WDM<double>* wdm : wdmList) {
|
|
79
|
+
if (wdm) {
|
|
80
|
+
delete wdm; // delete WDM object
|
|
81
|
+
}
|
|
82
|
+
}
|
|
83
|
+
|
|
84
|
+
// Delete wc_List
|
|
85
|
+
for (size_t i = 0; i < wc_List.size(); ++i) {
|
|
86
|
+
wc_List[i].clear();
|
|
87
|
+
}
|
|
72
88
|
return;
|
|
73
89
|
}
|
|
74
90
|
|
|
@@ -18,6 +18,8 @@ std::vector<double> inline pycwb_get_wavearray_data(wavearray<double> *wave) {
|
|
|
18
18
|
data.push_back(wave->data[i]);
|
|
19
19
|
}
|
|
20
20
|
|
|
21
|
+
// wave->resize(0); // Clear the wavearray to free memory
|
|
22
|
+
|
|
21
23
|
return data;
|
|
22
24
|
};
|
|
23
25
|
|
|
@@ -27,6 +29,8 @@ std::vector<short> inline pycwb_get_short_wavearray_data(wavearray<short> *wave)
|
|
|
27
29
|
data.push_back(wave->data[i]);
|
|
28
30
|
}
|
|
29
31
|
|
|
32
|
+
// wave->resize(0); // Clear the wavearray to free memory
|
|
33
|
+
|
|
30
34
|
return data;
|
|
31
35
|
};
|
|
32
36
|
|
|
@@ -62,3 +62,28 @@ Replace the following in `monster.cc`
|
|
|
62
62
|
|
|
63
63
|
|
|
64
64
|
to let the output managed by the python code.
|
|
65
|
+
|
|
66
|
+
Solved part of the memory leak
|
|
67
|
+
--------------------------------
|
|
68
|
+
|
|
69
|
+
In `network.cc`, the following line was added to the destructor of `Network` class:
|
|
70
|
+
|
|
71
|
+
.. code-block:: c
|
|
72
|
+
|
|
73
|
+
// Delete detector pointers
|
|
74
|
+
for (detector* d : ifoList) {
|
|
75
|
+
delete d;
|
|
76
|
+
}
|
|
77
|
+
|
|
78
|
+
// Delete WDM pointers
|
|
79
|
+
for (WDM<double>* wdm : wdmList) {
|
|
80
|
+
if (wdm) {
|
|
81
|
+
delete wdm; // delete WDM object
|
|
82
|
+
}
|
|
83
|
+
}
|
|
84
|
+
|
|
85
|
+
// Delete wc_List
|
|
86
|
+
for (size_t i = 0; i < wc_List.size(); ++i) {
|
|
87
|
+
wc_List[i].clear();
|
|
88
|
+
}
|
|
89
|
+
re
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
# An example to search for GW190521
|
|
2
|
+
|
|
3
|
+
|
|
4
|
+
## Fetch the required data
|
|
5
|
+
|
|
6
|
+
```bash
|
|
7
|
+
pycwb gwosc-data user_parameters.yaml
|
|
8
|
+
```
|
|
9
|
+
|
|
10
|
+
This command will read the `ifo`, `gps_start` and `gps_end` from the `user_parameters.yaml` file and download the frame files and data quality files from GWOSC.
|
|
11
|
+
|
|
12
|
+
## Run the search
|
|
13
|
+
|
|
14
|
+
```bash
|
|
15
|
+
pycwb run user_parameters.yaml
|
|
16
|
+
```
|
|
@@ -0,0 +1,95 @@
|
|
|
1
|
+
###### project ######
|
|
2
|
+
|
|
3
|
+
outputDir: "output"
|
|
4
|
+
nproc: 6
|
|
5
|
+
###### search ######
|
|
6
|
+
|
|
7
|
+
#calibVer: "C01"
|
|
8
|
+
#channelName: "DCS-CALIB_STRAIN_CLEAN_C01" # //"DCS-CALIB_STRAIN_CLEAN_C01"; // C00 -> "GDS-CALIB_STRAIN", C01 -> "DCS-CALIB_STRAIN_C01", C02 -> "DCS-CALIB_STRAIN_C02"
|
|
9
|
+
|
|
10
|
+
analysis: "2G"
|
|
11
|
+
cfg_search: "r"
|
|
12
|
+
|
|
13
|
+
plot_trigger: True
|
|
14
|
+
save_waveform: True
|
|
15
|
+
plot_waveform: True
|
|
16
|
+
save_injection: True
|
|
17
|
+
plot_injection: True
|
|
18
|
+
compress_output_json: False
|
|
19
|
+
|
|
20
|
+
optim: False
|
|
21
|
+
|
|
22
|
+
###### network configuration ######
|
|
23
|
+
ifo: ["L1","H1"]
|
|
24
|
+
refIFO: "L1"
|
|
25
|
+
|
|
26
|
+
# lags
|
|
27
|
+
lagSize: 1
|
|
28
|
+
lagStep: 1.
|
|
29
|
+
lagOff: 0
|
|
30
|
+
lagMax: 0
|
|
31
|
+
|
|
32
|
+
# superlags
|
|
33
|
+
slagSize: 1 # number of super lags (simulation=1) - if slagSize=0 -> Standard Segments
|
|
34
|
+
slagMin: 0
|
|
35
|
+
slagMax: 0
|
|
36
|
+
slagOff: 0
|
|
37
|
+
|
|
38
|
+
# job
|
|
39
|
+
segLen: 1200
|
|
40
|
+
segMLS: 600
|
|
41
|
+
segTHR: 200
|
|
42
|
+
segEdge: 10
|
|
43
|
+
|
|
44
|
+
# frequency
|
|
45
|
+
fLow: 16.
|
|
46
|
+
fHigh: 1024.
|
|
47
|
+
|
|
48
|
+
|
|
49
|
+
levelR: 3
|
|
50
|
+
l_low: 4 # low frequency resolution level // std (sthr = 2)
|
|
51
|
+
l_high: 10 # high frequency resolution level // std (sthr = 8)
|
|
52
|
+
|
|
53
|
+
wdmXTalk: "wdmXTalk/OverlapCatalog16-1024.bin"
|
|
54
|
+
|
|
55
|
+
healpix: 7
|
|
56
|
+
|
|
57
|
+
###### cWB production thresholds & regulators ######
|
|
58
|
+
|
|
59
|
+
bpp: 0.001
|
|
60
|
+
subnet: 0.5
|
|
61
|
+
subcut: -1.0
|
|
62
|
+
netRHO: 5.0
|
|
63
|
+
cedRHO: 5.0
|
|
64
|
+
netCC: 0.5
|
|
65
|
+
Acore: 1.7
|
|
66
|
+
Tgap: 0.2
|
|
67
|
+
Fgap: 128.0
|
|
68
|
+
delta: 0.5
|
|
69
|
+
cfg_gamma: -1.0
|
|
70
|
+
LOUD: 300
|
|
71
|
+
|
|
72
|
+
pattern: 10
|
|
73
|
+
|
|
74
|
+
iwindow: 100
|
|
75
|
+
|
|
76
|
+
# simulation
|
|
77
|
+
simulation: "one_inject_in_one_segment"
|
|
78
|
+
nfactor: 1
|
|
79
|
+
|
|
80
|
+
|
|
81
|
+
gps_start: 1242439367.4
|
|
82
|
+
gps_end: 1242446567.4
|
|
83
|
+
|
|
84
|
+
channelNamesRaw: ['L1:GWOSC-16KHZ_R1_STRAIN', 'H1:GWOSC-16KHZ_R1_STRAIN']
|
|
85
|
+
frFiles: ["input/L1_frames.in", "input/H1_frames.in"]
|
|
86
|
+
|
|
87
|
+
DQF: [
|
|
88
|
+
[ "L1" ,"input/L1_cat0.txt", CWB_CAT0, 0., False, False ],
|
|
89
|
+
[ "H1" ,"input/H1_cat0.txt", CWB_CAT0, 0., False, False ],
|
|
90
|
+
[ "L1" ,"input/L1_cat1.txt", CWB_CAT1, 0., False, False ],
|
|
91
|
+
[ "H1" ,"input/H1_cat1.txt", CWB_CAT1, 0., False, False ],
|
|
92
|
+
[ "L1" ,"input/L1_cat2.txt", CWB_CAT2, 0., False, False ],
|
|
93
|
+
[ "H1" ,"input/H1_cat2.txt", CWB_CAT2, 0., False, False ],
|
|
94
|
+
]
|
|
95
|
+
|