PycWB 0.22.2__tar.gz → 0.23.1__tar.gz

pycwb-0.23.1/.readthedocs.yaml

@@ -0,0 +1,68 @@
+version: 2
+
+build:
+  os: "ubuntu-22.04"
+  tools:
+    python: "mambaforge-22.9"
+
+conda:
+  environment: envs/environment.yml
+#  commands:
+#    - wget -q https://root.cern/download/root_v6.26.14.Linux-ubuntu22-x86_64-gcc11.4.tar.gz
+#    - tar -xf root_v6.26.14.Linux-ubuntu22-x86_64-gcc11.4.tar.gz --strip-components=1 -C /usr/local/
+#    - export ROOTSYS=/usr/local
+#    - export PYTHONPATH=$ROOTSYS/lib:$PYTHONPATH
+#    - export CLING_STANDARD_PCH=none
+#    - apt-get update
+#    - apt-get -y install git dpkg-dev cmake pkg-config g++ gcc binutils libx11-dev libxpm-dev libxft-dev libxext-dev tar gfortran subversion
+#    - apt-get -y install libfftw3-dev libcfitsio9 libsharp0 python3-pip
+#    - wget -q http://archive.ubuntu.com/ubuntu/pool/main/o/openssl/libssl1.1_1.1.1f-1ubuntu2_amd64.deb
+#    - dpkg -i libssl1.1_1.1.1f-1ubuntu2_amd64.deb
+#    - wget -q https://launchpad.net/ubuntu/+archive/primary/+files/libhealpix-cxx3_3.80.0-5_amd64.deb
+#    - wget -q https://launchpad.net/ubuntu/+archive/primary/+files/libhealpix-cxx-dev_3.80.0-5_amd64.deb
+#    - dpkg -i libhealpix-cxx3_3.80.0-5_amd64.deb
+#    - dpkg -i libhealpix-cxx-dev_3.80.0-5_amd64.deb
+#    - apt-get -y install python3-pip python3-venv
+#    - ln -s /usr/bin/python3 /usr/bin/python
+#    - python3 -m pip install pip setuptools -U
+
+python:
+  install:
+    #- requirements: docs/requirements.txt
+    - method: pip
+      path: .
+
+sphinx:
+  configuration: docs/source/conf.py
+
+#environment:
+#  ROOTSYS: /usr/local
+#  PYTHONPATH: /usr/local/lib:$PYTHONPATH
+
+#apt_packages:
+#  - wget
+#  - cmake
+#  - g++
+#  - gcc
+#  - gfortran
+#  - libx11-dev
+#  - libxpm-dev
+#  - libxft-dev
+#  - libxext-dev
+#  - libfftw3-dev
+#  - libcfitsio9
+#  - libsharp0
+#  - libssl1.1
+#
+#pre_build:
+#  - wget -q https://root.cern/download/root_v6.26.14.Linux-ubuntu22-x86_64-gcc11.4.tar.gz
+#  - tar -xf root_v6.26.14.Linux-ubuntu22-x86_64-gcc11.4.tar.gz --strip-components=1 -C /usr/local/
+#  - wget -q https://launchpad.net/ubuntu/+archive/primary/+files/libhealpix-cxx3_3.80.0-5_amd64.deb
+#  - wget -q https://launchpad.net/ubuntu/+archive/primary/+files/libhealpix-cxx-dev_3.80.0-5_amd64.deb
+#  - dpkg -i libhealpix-cxx3_3.80.0-5_amd64.deb
+#  - dpkg -i libhealpix-cxx-dev_3.80.0-5_amd64.deb
+#
+#exclude:
+#  - "dist/*"
+#  - "*.tar.gz"
+#  - "*.deb"

{pycwb-0.22.2 → pycwb-0.23.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PycWB
-Version: 0.22.2
+Version: 0.23.1
 Summary: A Python package for coherent gravitational wave burst analysis
 Home-page: https://git.ligo.org/yumeng.xu/pycwb
 Author-email: The PycWB team <yumeng.xu@ligo.org>
@@ -34,12 +34,14 @@ Requires-Dist: htcondor
 
 # PycWB
 
+[![Documentations](https://readthedocs.org/projects/pycwb/badge/?version=latest)](https://pycwb.readthedocs.io/en/latest/)
 [![Build Status](https://git.ligo.org/yumeng.xu/pycwb/badges/main/pipeline.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/pipelines)
 [![Releases](https://git.ligo.org/yumeng.xu/pycwb/-/badges/release.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/releases)
 [![PyPI version](https://badge.fury.io/py/pycWB.svg)](https://badge.fury.io/py/pycWB)
 [![License](https://img.shields.io/badge/license-GPLv3-blue)](https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/LICENSE)
 
 PycWB is a modularized Python package for gravitational wave burst search based on the core function of cWB.
+The documentation can be found at [pycwb.readthedocs.io](https://pycwb.readthedocs.io/en/latest/).
 
 ## Installation
 
@@ -56,6 +58,16 @@ conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nd
 python3 -m pip install pycwb
 ```
 
+Currently, pycWB is only available for x64 architecture.
+For Apple Silicon users, you can install the dependencies with the following commands:
+
+```bash
+conda create -n pycwb "python>=3.9,<3.11"
+conda activate pycwb
+conda config --env --set subdir osx-64
+conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nds2-client lalsuite setuptools_scm cmake pkg-config htcondor
+```
+
 ### Install pycWB from source
 
 ```bash
@@ -72,7 +84,7 @@ make install
 Example project can be found in [examples](https://git.ligo.org/yumeng.xu/pycwb/-/tree/main/examples)
 
 ```python
-from pycwb.search import search
+from pycwb.workflow.run import search
 
 search('./user_parameters.yaml')
 ```
@@ -80,14 +92,9 @@ search('./user_parameters.yaml')
 or run with command line
 
 ```bash
-pycwb_search ./user_parameters.yaml
+pycwb run ./user_parameters.yaml
 ```
 
 ## Interactive tutorial
 
  - Google Colab tutorial: [pycWB_GW150914.ipynb](https://colab.research.google.com/github/PycWB/pycwb/blob/main/examples/colab/pycWB_GW150914.ipynb)
-
-
-## Documentation
-
-Documentation can be found in [https://yumeng.xu.docs.ligo.org/pycwb](https://yumeng.xu.docs.ligo.org/pycwb)

{pycwb-0.22.2 → pycwb-0.23.1}/PycWB.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PycWB
-Version: 0.22.2
+Version: 0.23.1
 Summary: A Python package for coherent gravitational wave burst analysis
 Home-page: https://git.ligo.org/yumeng.xu/pycwb
 Author-email: The PycWB team <yumeng.xu@ligo.org>
@@ -34,12 +34,14 @@ Requires-Dist: htcondor
 
 # PycWB
 
+[![Documentations](https://readthedocs.org/projects/pycwb/badge/?version=latest)](https://pycwb.readthedocs.io/en/latest/)
 [![Build Status](https://git.ligo.org/yumeng.xu/pycwb/badges/main/pipeline.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/pipelines)
 [![Releases](https://git.ligo.org/yumeng.xu/pycwb/-/badges/release.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/releases)
 [![PyPI version](https://badge.fury.io/py/pycWB.svg)](https://badge.fury.io/py/pycWB)
 [![License](https://img.shields.io/badge/license-GPLv3-blue)](https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/LICENSE)
 
 PycWB is a modularized Python package for gravitational wave burst search based on the core function of cWB.
+The documentation can be found at [pycwb.readthedocs.io](https://pycwb.readthedocs.io/en/latest/).
 
 ## Installation
 
@@ -56,6 +58,16 @@ conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nd
 python3 -m pip install pycwb
 ```
 
+Currently, pycWB is only available for x64 architecture.
+For Apple Silicon users, you can install the dependencies with the following commands:
+
+```bash
+conda create -n pycwb "python>=3.9,<3.11"
+conda activate pycwb
+conda config --env --set subdir osx-64
+conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nds2-client lalsuite setuptools_scm cmake pkg-config htcondor
+```
+
 ### Install pycWB from source
 
 ```bash
@@ -72,7 +84,7 @@ make install
 Example project can be found in [examples](https://git.ligo.org/yumeng.xu/pycwb/-/tree/main/examples)
 
 ```python
-from pycwb.search import search
+from pycwb.workflow.run import search
 
 search('./user_parameters.yaml')
 ```
@@ -80,14 +92,9 @@ search('./user_parameters.yaml')
 or run with command line
 
 ```bash
-pycwb_search ./user_parameters.yaml
+pycwb run ./user_parameters.yaml
 ```
 
 ## Interactive tutorial
 
  - Google Colab tutorial: [pycWB_GW150914.ipynb](https://colab.research.google.com/github/PycWB/pycwb/blob/main/examples/colab/pycWB_GW150914.ipynb)
-
-
-## Documentation
-
-Documentation can be found in [https://yumeng.xu.docs.ligo.org/pycwb](https://yumeng.xu.docs.ligo.org/pycwb)

{pycwb-0.22.2 → pycwb-0.23.1}/PycWB.egg-info/SOURCES.txt

@@ -1,5 +1,6 @@
 .gitignore
 .gitlab-ci.yml
+.readthedocs.yaml
 LICENSE
 MANIFEST.in
 Makefile
@@ -150,6 +151,7 @@ docs/source/workflow.png
 docs/source/_static/.keep
 docs/source/_templates/.keep
 envs/Dockerfile
+envs/environment.yml
 envs/mamba/Dockerfile
 examples/autoencoder/pycwb_injection.ipynb
 examples/autoencoder/user_parameters_injection.yaml
@@ -174,7 +176,6 @@ examples/benchmark/input/OPBM_H1.frames
 examples/benchmark/input/OPBM_L1.frames
 examples/colab/pycWB_GW150914.ipynb
 examples/injection/pycwb_injection.ipynb
-examples/injection/pycwb_injection.py
 examples/injection/user_parameters_injection.yaml
 examples/lvk_sep_2023/demo.ipynb
 examples/lvk_sep_2023/user_parameters.yaml
@@ -231,10 +232,11 @@ prototypes/performance/numba_test.py
 prototypes/performance/taichi_test.py
 pycwb/__init__.py
 pycwb/_version.py
-pycwb/search.py
 pycwb/cli/__init__.py
-pycwb/cli/batch.py
+pycwb/cli/batch_runner.py
+pycwb/cli/batch_setup.py
 pycwb/cli/flow.py
+pycwb/cli/merge_catalog.py
 pycwb/cli/run.py
 pycwb/cli/server.py
 pycwb/cli/xtalk.py
@@ -269,6 +271,8 @@ pycwb/modules/data_conditioning/data_conditioning.py
 pycwb/modules/data_conditioning/module.yaml
 pycwb/modules/data_conditioning/regression.py
 pycwb/modules/data_conditioning/whitening.py
+pycwb/modules/energy_threshold/__init__.py
+pycwb/modules/energy_threshold/threshold.py
 pycwb/modules/job_segment/__init__.py
 pycwb/modules/job_segment/dq_segment.py
 pycwb/modules/job_segment/frame.py
@@ -326,6 +330,8 @@ pycwb/modules/super_cluster/sub_net_cut.py
 pycwb/modules/super_cluster/super_cluster.py
 pycwb/modules/super_cluster/supercluster.py
 pycwb/modules/super_cluster/utils.py
+pycwb/modules/supercluster_naive/__init__.py
+pycwb/modules/supercluster_naive/supercluster2.py
 pycwb/modules/superlag/__init__.py
 pycwb/modules/superlag/superlag.py
 pycwb/modules/web_viewer/__init__.py
@@ -361,6 +367,7 @@ pycwb/utils/dep_check.py
 pycwb/utils/image.py
 pycwb/utils/module.py
 pycwb/utils/network.py
+pycwb/utils/parser.py
 pycwb/utils/skymap_coord.py
 pycwb/utils/yaml_helper.py
 pycwb/utils/conversions/__init__.py
@@ -375,7 +382,10 @@ pycwb/vendor/web_viewer/styles.css
 pycwb/vendor/web_viewer/viewer.html
 pycwb/workflow/__init__.py
 pycwb/workflow/batch.py
+pycwb/workflow/merge.py
+pycwb/workflow/run.py
 pycwb/workflow/subflow/__init__.py
 pycwb/workflow/subflow/postprocess_and_plots.py
 pycwb/workflow/subflow/prepare_job_runs.py
+pycwb/workflow/subflow/process_job_segment.py
 pycwb/workflow/subflow/supercluster_and_likelihood.py

{pycwb-0.22.2 → pycwb-0.23.1}/README.md

@@ -1,11 +1,13 @@
 # PycWB
 
+[![Documentations](https://readthedocs.org/projects/pycwb/badge/?version=latest)](https://pycwb.readthedocs.io/en/latest/)
 [![Build Status](https://git.ligo.org/yumeng.xu/pycwb/badges/main/pipeline.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/pipelines)
 [![Releases](https://git.ligo.org/yumeng.xu/pycwb/-/badges/release.svg)](https://git.ligo.org/yumeng.xu/pycwb/-/releases)
 [![PyPI version](https://badge.fury.io/py/pycWB.svg)](https://badge.fury.io/py/pycWB)
 [![License](https://img.shields.io/badge/license-GPLv3-blue)](https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/LICENSE)
 
 PycWB is a modularized Python package for gravitational wave burst search based on the core function of cWB.
+The documentation can be found at [pycwb.readthedocs.io](https://pycwb.readthedocs.io/en/latest/).
 
 ## Installation
 
@@ -22,6 +24,16 @@ conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nd
 python3 -m pip install pycwb
 ```
 
+Currently, pycWB is only available for x64 architecture.
+For Apple Silicon users, you can install the dependencies with the following commands:
+
+```bash
+conda create -n pycwb "python>=3.9,<3.11"
+conda activate pycwb
+conda config --env --set subdir osx-64
+conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nds2-client lalsuite setuptools_scm cmake pkg-config htcondor
+```
+
 ### Install pycWB from source
 
 ```bash
@@ -38,7 +50,7 @@ make install
 Example project can be found in [examples](https://git.ligo.org/yumeng.xu/pycwb/-/tree/main/examples)
 
 ```python
-from pycwb.search import search
+from pycwb.workflow.run import search
 
 search('./user_parameters.yaml')
 ```
@@ -46,14 +58,9 @@ search('./user_parameters.yaml')
 or run with command line
 
 ```bash
-pycwb_search ./user_parameters.yaml
+pycwb run ./user_parameters.yaml
 ```
 
 ## Interactive tutorial
 
  - Google Colab tutorial: [pycWB_GW150914.ipynb](https://colab.research.google.com/github/PycWB/pycwb/blob/main/examples/colab/pycWB_GW150914.ipynb)
-
-
-## Documentation
-
-Documentation can be found in [https://yumeng.xu.docs.ligo.org/pycwb](https://yumeng.xu.docs.ligo.org/pycwb)

{pycwb-0.22.2 → pycwb-0.23.1}/bin/pycwb

@@ -7,9 +7,10 @@ import argparse
 import pycwb.cli.server as server
 import pycwb.cli.run as run
 import pycwb.cli.flow as flow
-import pycwb.cli.batch as batch
+import pycwb.cli.batch_setup as batch_setup
+import pycwb.cli.batch_runner as batch_runner
 import pycwb.cli.xtalk as xtalk
-
+import pycwb.cli.merge_catalog as merge_catalog
 
 def main():
     parser = argparse.ArgumentParser(prog='pycwb')
@@ -29,14 +30,22 @@ def main():
     flow.init_parser(flow_parser)
     flow_parser.set_defaults(func=flow.command)
 
-    batch_parser = subparsers.add_parser('batch', help='Run search')
-    batch.init_parser(batch_parser)
-    batch_parser.set_defaults(func=batch.command)
+    batch_parser = subparsers.add_parser('batch-setup', help='Setup batch run')
+    batch_setup.init_parser(batch_parser)
+    batch_parser.set_defaults(func=batch_setup.command)
+
+    batch_runner_parser = subparsers.add_parser('batch-runner', help='Runner for batch run')
+    batch_runner.init_parser(batch_runner_parser)
+    batch_runner_parser.set_defaults(func=batch_runner.command)
 
     xtalk_parser = subparsers.add_parser('xtalk', help='Convert xtalk file')
     xtalk.init_parser(xtalk_parser)
     xtalk_parser.set_defaults(func=xtalk.command)
 
+    merge_catalog_parser = subparsers.add_parser('merge-catalog', help='Merge catalog files')
+    merge_catalog.init_parser(merge_catalog_parser)
+    merge_catalog_parser.set_defaults(func=merge_catalog.command)
+
     args = parser.parse_args()
     if hasattr(args, 'func'):
         args.func(args)

{pycwb-0.22.2 → pycwb-0.23.1}/cwb-core/CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 3.14.0 FATAL_ERROR)
+cmake_minimum_required(VERSION 3.15.0 FATAL_ERROR)
 project(
     WAT
     LANGUAGES CXX ASM
@@ -6,6 +6,8 @@ project(
     DESCRIPTION "cWB pipeline source library"
 )
 
+set(CMAKE_OSX_ARCHITECTURES "x86_64" CACHE INTERNAL "" FORCE)
+
 if(NOT CMAKE_BUILD_TYPE)
    set(CMAKE_BUILD_TYPE "Release" CACHE STRING
            "Choose the type of build, options are: Debug Release

pycwb-0.23.1/docs/source/index.rst

@@ -0,0 +1,148 @@
+.. pycWB documentation master file, created by
+   sphinx-quickstart on Wed Mar  8 13:16:45 2023.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+Welcome to pycWB's documentation!
+===================================
+
+.. image:: https://readthedocs.org/projects/pycwb/badge/?version=latest
+   :target: https://pycwb.readthedocs.io/en/latest/
+   :alt: Documentations
+
+.. image:: https://git.ligo.org/yumeng.xu/pycwb/badges/main/pipeline.svg
+   :target: https://git.ligo.org/yumeng.xu/pycwb/-/pipelines
+   :alt: Build Status
+
+.. image:: https://git.ligo.org/yumeng.xu/pycwb/-/badges/release.svg
+   :target: https://git.ligo.org/yumeng.xu/pycwb/-/releases
+   :alt: Releases
+
+.. image:: https://badge.fury.io/py/pycWB.svg
+   :target: https://badge.fury.io/py/pycWB
+   :alt: PyPI version
+
+.. image:: https://img.shields.io/badge/license-GPLv3-blue
+   :target: https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/LICENSE
+   :alt: License
+
+
+pycWB is a modularized Python package for gravitational wave burst search based on the core function of cWB.
+
+
+.. toctree::
+   :hidden:
+   :maxdepth: 5
+
+   install
+   credit
+   pycWB <modules>
+   genindex
+
+.. toctree::
+   :hidden:
+   :caption: User Guides
+   :maxdepth: 1
+
+   tutorials
+   schema
+
+.. toctree::
+   :hidden:
+   :caption: Developer Guides
+   :maxdepth: 1
+
+   mod_cwb
+
+
+Getting Started
+===============
+
+Installation
+------------
+
+PycWB is available on `PyPI <https://pypi.org/project/pycWB/>`_. You can install it with pip.
+Some dependencies are required to be installed before installing pycWB with pip.
+The easiest way is to install them with conda.
+
+.. code-block:: bash
+
+   conda create -n pycwb "python>=3.9,<3.11"
+   conda activate pycwb
+   conda install -c conda-forge root=6.26.10 healpix_cxx=3.81 nds2-client python-nds2-client lalsuite setuptools_scm cmake pkg-config
+   python3 -m pip install pycwb
+
+
+Run your first burst search
+---------------------------
+
+In your first burst search, we will use a built-in noise generator and waveform generator
+to minimize the requirement for external data. What you need is just one configuration file in YAML format.
+
+To start with, copy the example configuration folder from the source code or download the
+``user_parameters_injection.yaml`` manually from `here <https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/examples/injection/user_parameters_injection.yaml>`_.
+
+.. code-block:: bash
+
+    cp -r [path_to_source_code]/examples/injection my_first_search
+
+Now, you are all set! You can directly run the example in the terminal with the ``pycwb run`` command
+
+.. code-block:: bash
+
+    pycwb run user_parameters_injection.yaml
+
+Or you can open the juptyer notebook ``pycwb_injection.ipynb`` (download `here <https://git.ligo.org/yumeng.xu/pycwb/-/blob/main/examples/injection/pycwb_injection.ipynb>`_)
+and run the search step by step
+
+Go deeper into pycWB.search
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+If you want to know more about the search process, please refer to
+:ref:`tutorial_search`
+
+Step by step injection!
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+If you want to know more about the injection process step by step, please refer to
+:ref:`tutorial_injection` or the juptyer notebook `pycwb_injection.ipynb`
+
+Command line interfaces (CLI)
+------------------------------
+
+It is recommended to use the command line interfaces (CLI) to run the search.
+You can get help by running the command with the ``-h`` option. Here are the current available commands:
+
+.. list-table:: Available Commands
+   :header-rows: 1
+
+   * - Command
+     - Description
+   * - ``pycwb run``
+     - Run a single search
+   * - ``pycwb batch-setup``
+     - Setup batch run
+   * - ``pycwb batch-runner``
+     - Runner for batch run, used for the job submission
+   * - ``pycwb flow``
+     - Run search with prefect flow
+   * - ``pycwb xtalk``
+     - Convert xtalk file
+   * - ``pycwb merge-catalog``
+     - Merge catalog files
+   * - ``pycwb server``
+     - Run a simple server to show the results
+
+
+Basic Workflow
+==============
+.. image:: workflow.png
+   :width: 100%
+   :align: center
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`

{pycwb-0.22.2 → pycwb-0.23.1}/docs/source/tutorial_search.rst

@@ -13,7 +13,7 @@ three parts: job generation and data analysis
 Job Control
 -----------------
 
-The job control part is done by :py:func:`pycwb.search.search`.
+The job control part is done by the functions in :py:func:`pycwb.workflow`.
 
 Initialize logger with log_file and log_level, if log_file is None, log will be printed to stdout.
 
@@ -22,7 +22,8 @@ Initialize logger with log_file and log_level, if log_file is None, log will be
    from pycwb.modules.logger import logger_init
    logger_init(log_file, log_level)
 
-set env HOME_WAT_FILTERS to the path of xdmXTalk. pycWB contains a sample xdmXTalk file in vendor folder.
+set env HOME_WAT_FILTERS to the path of xdmXTalk. pycWB stops including xdmXTalk file in the package.
+The xdmXTalk file can be downloaded from https://github.com/PycWB/xtalk-data.
 You can also use your own xdmXTalk file.
 
 .. code-block:: python
@@ -30,7 +31,7 @@ You can also use your own xdmXTalk file.
    import os, pycwb
 
    pycwb_path = os.path.dirname(os.path.abspath(pycwb.__file__))
-   os.environ['HOME_WAT_FILTERS'] = f"{os.path.abspath(pycwb_path)}/vendor"
+   os.environ['HOME_WAT_FILTERS'] = <You path to the folder containing xdmXTalk files>
 
 read user parameters from user_parameters.yaml to a :py:class:`.Config` object.
 

pycwb-0.23.1/envs/environment.yml

@@ -0,0 +1,15 @@
+name: pycwb
+channels:
+  - conda-forge
+  - igwn
+dependencies:
+  - cmake
+  - healpix_cxx=3.81
+  - lalsuite
+  - nds2-client
+  - pkg-config
+  - python-nds2-client
+  - python=3.10
+  - root=6.26.10
+  - setuptools_scm
+  - sphinx_rtd_theme

{pycwb-0.22.2 → pycwb-0.23.1}/pycwb/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.22.2'
-__version_tuple__ = version_tuple = (0, 22, 2)
+__version__ = version = '0.23.1'
+__version_tuple__ = version_tuple = (0, 23, 1)

pycwb-0.23.1/pycwb/cli/batch_runner.py

@@ -0,0 +1,48 @@
+import os
+
+
+def init_parser(parser):
+    # Add the arguments
+    parser.add_argument('user_parameter_file',
+                        metavar='file_path',
+                        type=str,
+                        help='the path to the user parameter file')
+
+    # working dir
+    parser.add_argument('--work-dir',
+                        '-d',
+                        metavar='work_dir',
+                        type=str,
+                        default='.',
+                        help='the working directory')
+
+    # threads
+    parser.add_argument('--n-proc',
+                        '-n',
+                        metavar='n_proc',
+                        type=int,
+                        default=1,
+                        help='the number of cpu to use, default to 1. If it set to 0, '
+                             'it will use the value from the user parameter file.')
+
+    # jobs
+    parser.add_argument('--jobs',
+                        '-j',
+                        metavar='jobs',
+                        type=str,
+                        default=None,
+                        help='the range of jobs to run, e.g., 0-9')
+
+    # compress json
+    parser.add_argument('--compress_json',
+                        action='store_true',
+                        default=True,
+                        help='compress the json files, by default True')
+
+
+def command(args):
+    from pycwb.workflow.batch import batch_run
+
+    # Run the search function with the specified user parameter file
+    batch_run(args.user_parameter_file, working_dir=args.work_dir,
+              jobs=args.jobs, compress_json=args.compress_json, n_proc=args.n_proc)