PyVBMC 1.0.3__tar.gz → 1.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (196) hide show
  1. pyvbmc-1.0.4/.github/dependabot.yml +7 -0
  2. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/build.yml +3 -3
  3. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/docs.yml +3 -3
  4. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/merge-tests.yml +4 -4
  5. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/release.yml +2 -2
  6. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/tests.yml +3 -3
  7. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PKG-INFO +3 -3
  8. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/PKG-INFO +3 -3
  9. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/SOURCES.txt +1 -0
  10. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/requires.txt +2 -2
  11. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyproject.toml +2 -2
  12. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.coveragerc +0 -0
  13. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.coveragerc-html.css +0 -0
  14. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.gitattributes +0 -0
  15. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.gitignore +0 -0
  16. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/.pre-commit-config.yaml +0 -0
  17. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/CITATION.cff +0 -0
  18. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/LICENSE +0 -0
  19. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/MANIFEST.in +0 -0
  20. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/dependency_links.txt +0 -0
  21. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/top_level.txt +0 -0
  22. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/README.md +0 -0
  23. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_1_basic_usage.ipynb +0 -0
  24. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_2_inputs_outputs.ipynb +0 -0
  25. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_3_diagnostics_and_saving.ipynb +0 -0
  26. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_4_validation.ipynb +0 -0
  27. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_5_prior_distributions.ipynb +0 -0
  28. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/pyvbmc_example_6_noisy_likelihoods.ipynb +0 -0
  29. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/Makefile +0 -0
  30. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_1_full_code.py +0 -0
  31. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_2_full_code.py +0 -0
  32. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_3_full_code.py +0 -0
  33. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_4_full_code.py +0 -0
  34. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_5_full_code.py +0 -0
  35. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/pyvbmc_example_6_full_code.py +0 -0
  36. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/logo.svg +0 -0
  37. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pylintrc +0 -0
  38. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/__init__.py +0 -0
  39. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/__main__.py +0 -0
  40. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/README.md +0 -0
  41. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/__init__.py +0 -0
  42. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/abstract_acq_fcn.py +0 -0
  43. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn.py +0 -0
  44. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn_imiqr.py +0 -0
  45. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn_log.py +0 -0
  46. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn_noisy.py +0 -0
  47. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn_vanilla.py +0 -0
  48. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/acq_fcn_viqr.py +0 -0
  49. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/acquisition_functions/utilities.py +0 -0
  50. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/decorators/README.md +0 -0
  51. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/decorators/__init__.py +0 -0
  52. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/decorators/handle_0D_1D_input.py +0 -0
  53. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/entropy/README.md +0 -0
  54. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/entropy/__init__.py +0 -0
  55. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/entropy/entlb_vbmc.py +0 -0
  56. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/entropy/entmc_vbmc.py +0 -0
  57. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/formatting/__init__.py +0 -0
  58. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/formatting/formatting.py +0 -0
  59. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/function_logger/README.md +0 -0
  60. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/function_logger/__init__.py +0 -0
  61. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/function_logger/function_logger.py +0 -0
  62. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/parameter_transformer/README.md +0 -0
  63. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/parameter_transformer/__init__.py +0 -0
  64. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/parameter_transformer/parameter_transformer.py +0 -0
  65. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/__init__.py +0 -0
  66. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/convert_to_prior.py +0 -0
  67. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/prior.py +0 -0
  68. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/product.py +0 -0
  69. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/scipy.py +0 -0
  70. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/smooth_box.py +0 -0
  71. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/spline_trapezoidal.py +0 -0
  72. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/tile_inputs.py +0 -0
  73. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/trapezoidal.py +0 -0
  74. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/uniform_box.py +0 -0
  75. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/user_function.py +0 -0
  76. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/README.md +0 -0
  77. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/__init__.py +0 -0
  78. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/get_hpd.py +0 -0
  79. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/kde_1d.py +0 -0
  80. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/kl_div_mvn.py +0 -0
  81. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/__init__.py +0 -0
  82. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/_check_grad.py +0 -0
  83. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/_compare_matlab.py +0 -0
  84. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/__init__.py +0 -0
  85. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_abstract_acquisition_function.py +0 -0
  86. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn.py +0 -0
  87. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn_imiqr.py +0 -0
  88. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn_log.py +0 -0
  89. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn_noisy.py +0 -0
  90. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn_vanilla.py +0 -0
  91. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/acquisition_functions/test_acq_fcn_viqr.py +0 -0
  92. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/decorators/__init__.py +0 -0
  93. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/decorators/test_handle_0D_1D_input_decorator.py +0 -0
  94. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/entropy/entropy-test.mat +0 -0
  95. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/entropy/test_entlb_vbmc.py +0 -0
  96. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/entropy/test_entmc_vbmc.py +0 -0
  97. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/function_logger/__init__.py +0 -0
  98. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/function_logger/test_function_logger.py +0 -0
  99. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/parameter_transformer/__init__.py +0 -0
  100. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/parameter_transformer/test_parameter_transformer.py +0 -0
  101. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/__init__.py +0 -0
  102. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_convert_to_prior.py +0 -0
  103. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_priors.py +0 -0
  104. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_product_prior.py +0 -0
  105. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_scipy_prior.py +0 -0
  106. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_smooth_box_prior.py +0 -0
  107. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_spline_trapezoid_prior.py +0 -0
  108. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_tile_inputs.py +0 -0
  109. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_trapezoid_prior.py +0 -0
  110. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_uniform_box_prior.py +0 -0
  111. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/priors/test_user_function_prior.py +0 -0
  112. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/stats/__init__.py +0 -0
  113. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/stats/test_get_hpd.py +0 -0
  114. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/stats/test_kde1d.py +0 -0
  115. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/stats/test_kldiv_mvn.py +0 -0
  116. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/testing/__init__.py +0 -0
  117. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/testing/test_check_grad.py +0 -0
  118. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/timer/__init__.py +0 -0
  119. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/timer/test_timer.py +0 -0
  120. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/X.txt +0 -0
  121. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/__init__.py +0 -0
  122. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/bnd_lb.txt +0 -0
  123. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/bnd_ub.txt +0 -0
  124. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/mu.txt +0 -0
  125. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/test_moments_no_orig_flag_2_MATLAB.mat +0 -0
  126. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/test_variational_posterior.py +0 -0
  127. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/test_vp_save_and_load.py +0 -0
  128. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/test_vp_save_static.pkl +0 -0
  129. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/variational_posterior/vp-test.mat +0 -0
  130. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/X.txt +0 -0
  131. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/__init__.py +0 -0
  132. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/activesample_proposalpdf.m +0 -0
  133. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/activesample_proposalpdf.mat +0 -0
  134. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/fess.m +0 -0
  135. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/fess.mat +0 -0
  136. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/log_isbasefun.m +0 -0
  137. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/compare_MATLAB/log_isbasefun.mat +0 -0
  138. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/dF.txt +0 -0
  139. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/dG_gp_log_joint.txt +0 -0
  140. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/hyp.txt +0 -0
  141. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/mu.txt +0 -0
  142. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_active_importance_sampling.py +0 -0
  143. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_gaussian_process_train.py +0 -0
  144. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_iteration_history.py +0 -0
  145. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_minimize_adam.py +0 -0
  146. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_options.py +0 -0
  147. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_variational_optimization.py +0 -0
  148. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_active_sample.py +0 -0
  149. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_determine_best_vp.py +0 -0
  150. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_finalboost.py +0 -0
  151. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_init.py +0 -0
  152. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_loop_termination.py +0 -0
  153. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_optimize.py +0 -0
  154. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_save_and_load.py +0 -0
  155. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/test_vbmc_save_static.pkl +0 -0
  156. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/y.txt +0 -0
  157. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_rotoscaling.py +0 -0
  158. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_gp_X.txt +0 -0
  159. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_gp_hyps.txt +0 -0
  160. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_gp_hyps_new.txt +0 -0
  161. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_gp_y.txt +0 -0
  162. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_vp_K.txt +0 -0
  163. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_vp_lambda.txt +0 -0
  164. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_vp_mu.txt +0 -0
  165. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_vp_sigma.txt +0 -0
  166. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_gp_and_vp_vp_w.txt +0 -0
  167. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_input_R_mat.txt +0 -0
  168. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_input_rands.txt +0 -0
  169. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/test_warp_input_scale.txt +0 -0
  170. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/whitening/vp_initialized_MATLAB.mat +0 -0
  171. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/README.md +0 -0
  172. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/__init__.py +0 -0
  173. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/timer.py +0 -0
  174. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/variational_posterior/README.md +0 -0
  175. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/variational_posterior/__init__.py +0 -0
  176. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/variational_posterior/variational_posterior.py +0 -0
  177. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/README.md +0 -0
  178. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/__init__.py +0 -0
  179. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/active_importance_sampling.py +0 -0
  180. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/active_sample.py +0 -0
  181. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/create_vbmc_animation.py +0 -0
  182. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/gaussian_process_train.py +0 -0
  183. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/iteration_history.py +0 -0
  184. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/minimize_adam.py +0 -0
  185. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/option_configs/advanced_vbmc_options.ini +0 -0
  186. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/option_configs/basic_vbmc_options.ini +0 -0
  187. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/option_configs/test_options.ini +0 -0
  188. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/option_configs/test_options2.ini +0 -0
  189. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/options.py +0 -0
  190. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/variational_optimization.py +0 -0
  191. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/vbmc.py +0 -0
  192. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/whitening/README.md +0 -0
  193. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/whitening/__init__.py +0 -0
  194. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/whitening/whitening.py +0 -0
  195. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/setup.cfg +0 -0
  196. {pyvbmc-1.0.3 → pyvbmc-1.0.4}/setup.py +0 -0
pyvbmc-1.0.4/.github/dependabot.yml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ version: 2
3
+ updates:
4
+ - package-ecosystem: "github-actions"
5
+ directory: "/"
6
+ schedule:
7
+ interval: "monthly"
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/build.yml RENAMED
@@ -11,8 +11,8 @@ jobs:
11
11
  build:
12
12
  runs-on: ubuntu-latest
13
13
  steps:
14
- - uses: actions/checkout@v3
15
- - uses: actions/setup-python@v4
14
+ - uses: actions/checkout@v4
15
+ - uses: actions/setup-python@v5
16
16
  name: Install Python
17
17
  with:
18
18
  python-version: "3.9"
@@ -20,6 +20,6 @@ jobs:
20
20
  run: |
21
21
  python -m pip install -U build setuptools_scm
22
22
  python -m build .
23
- - uses: actions/upload-artifact@v3
23
+ - uses: actions/upload-artifact@v4
24
24
  with:
25
25
  path: dist/*
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/docs.yml RENAMED
@@ -14,18 +14,18 @@ jobs:
14
14
 
15
15
  steps:
16
16
  - name: Checkout main
17
- uses: actions/checkout@v3
17
+ uses: actions/checkout@v4
18
18
  with:
19
19
  path: main
20
20
 
21
21
  - name: Checkout gh-pages
22
- uses: actions/checkout@v3
22
+ uses: actions/checkout@v4
23
23
  with:
24
24
  path: gh-pages
25
25
  ref: gh-pages
26
26
 
27
27
  - name: Set up Python
28
- uses: actions/setup-python@v4
28
+ uses: actions/setup-python@v5
29
29
  with:
30
30
  python-version: 3.11
31
31
 
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/merge-tests.yml RENAMED
@@ -13,7 +13,7 @@ jobs:
13
13
  run_job: ${{ steps.check_files.outputs.run_job }}
14
14
  steps:
15
15
  - name: Checkout PyVBMC
16
- uses: actions/checkout@v3
16
+ uses: actions/checkout@v4
17
17
  with:
18
18
  fetch-depth: 0
19
19
  path: pyvbmc
@@ -56,18 +56,18 @@ jobs:
56
56
 
57
57
  steps:
58
58
  - name: Checkout PyVBMC
59
- uses: actions/checkout@v3
59
+ uses: actions/checkout@v4
60
60
  with:
61
61
  path: pyvbmc
62
62
 
63
63
  - name: Checkout GPyReg
64
- uses: actions/checkout@v3
64
+ uses: actions/checkout@v4
65
65
  with:
66
66
  repository: acerbilab/gpyreg
67
67
  path: gpyreg
68
68
 
69
69
  - name: Setup Python
70
- uses: actions/setup-python@v4
70
+ uses: actions/setup-python@v5
71
71
  with:
72
72
  python-version: ${{ matrix.python-version }}
73
73
 
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/release.yml RENAMED
@@ -13,12 +13,12 @@ jobs:
13
13
  runs-on: ubuntu-latest
14
14
  steps:
15
15
  - name: Download built package
16
- uses: actions/download-artifact@v3
16
+ uses: actions/download-artifact@v4
17
17
  with:
18
18
  name: artifact
19
19
  path: dist
20
20
 
21
21
  - name: Upload to PyPI
22
- uses: pypa/gh-action-pypi-publish@v1.6.4
22
+ uses: pypa/gh-action-pypi-publish@v1.10.2
23
23
  with:
24
24
  password: ${{ secrets.pypi_password }}
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.github/workflows/tests.yml RENAMED
@@ -17,18 +17,18 @@ jobs:
17
17
 
18
18
  steps:
19
19
  - name: Checkout PyVBMC
20
- uses: actions/checkout@v3
20
+ uses: actions/checkout@v4
21
21
  with:
22
22
  path: pyvbmc
23
23
 
24
24
  - name: Checkout GPyReg
25
- uses: actions/checkout@v3
25
+ uses: actions/checkout@v4
26
26
  with:
27
27
  repository: acerbilab/gpyreg
28
28
  path: gpyreg
29
29
 
30
30
  - name: Setup Python
31
- uses: actions/setup-python@v4
31
+ uses: actions/setup-python@v5
32
32
  with:
33
33
  python-version: ${{ matrix.python-version }}
34
34
 
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: PyVBMC
3
- Version: 1.0.3
3
+ Version: 1.0.4
4
4
  Summary: Variational Bayesian Monte Carlo in Python.
5
5
  License: BSD 3-Clause License
6
6
 
@@ -35,13 +35,13 @@ License: BSD 3-Clause License
35
35
  Requires-Python: >=3.9
36
36
  Description-Content-Type: text/markdown
37
37
  License-File: LICENSE
38
- Requires-Dist: cma>=3.1.0
38
+ Requires-Dist: cma>=3.4.0
39
39
  Requires-Dist: corner>=2.2.1
40
40
  Requires-Dist: dill>=0.3.5.1
41
41
  Requires-Dist: gpyreg>=0.1.0
42
42
  Requires-Dist: imageio>=2.13.5
43
43
  Requires-Dist: matplotlib>=3.9.0
44
- Requires-Dist: numpy<2.0.0
44
+ Requires-Dist: numpy>=2.0.0
45
45
  Requires-Dist: plotly>=5.11.0
46
46
  Requires-Dist: pytest>=6.2.5
47
47
  Requires-Dist: pytest-mock>=3.6.1
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: PyVBMC
3
- Version: 1.0.3
3
+ Version: 1.0.4
4
4
  Summary: Variational Bayesian Monte Carlo in Python.
5
5
  License: BSD 3-Clause License
6
6
 
@@ -35,13 +35,13 @@ License: BSD 3-Clause License
35
35
  Requires-Python: >=3.9
36
36
  Description-Content-Type: text/markdown
37
37
  License-File: LICENSE
38
- Requires-Dist: cma>=3.1.0
38
+ Requires-Dist: cma>=3.4.0
39
39
  Requires-Dist: corner>=2.2.1
40
40
  Requires-Dist: dill>=0.3.5.1
41
41
  Requires-Dist: gpyreg>=0.1.0
42
42
  Requires-Dist: imageio>=2.13.5
43
43
  Requires-Dist: matplotlib>=3.9.0
44
- Requires-Dist: numpy<2.0.0
44
+ Requires-Dist: numpy>=2.0.0
45
45
  Requires-Dist: plotly>=5.11.0
46
46
  Requires-Dist: pytest>=6.2.5
47
47
  Requires-Dist: pytest-mock>=3.6.1
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/SOURCES.txt RENAMED
@@ -11,6 +11,7 @@ logo.svg
11
11
  pylintrc
12
12
  pyproject.toml
13
13
  setup.py
14
+ .github/dependabot.yml
14
15
  .github/workflows/build.yml
15
16
  .github/workflows/docs.yml
16
17
  .github/workflows/merge-tests.yml
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/PyVBMC.egg-info/requires.txt RENAMED
@@ -1,10 +1,10 @@
1
- cma>=3.1.0
1
+ cma>=3.4.0
2
2
  corner>=2.2.1
3
3
  dill>=0.3.5.1
4
4
  gpyreg>=0.1.0
5
5
  imageio>=2.13.5
6
6
  matplotlib>=3.9.0
7
- numpy<2.0.0
7
+ numpy>=2.0.0
8
8
  plotly>=5.11.0
9
9
  pytest>=6.2.5
10
10
  pytest-mock>=3.6.1
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyproject.toml RENAMED
@@ -7,13 +7,13 @@ description = "Variational Bayesian Monte Carlo in Python."
7
7
  readme = "README.md"
8
8
  license = { file = "LICENSE" }
9
9
  dependencies = [
10
- "cma >= 3.1.0",
10
+ "cma >= 3.4.0",
11
11
  "corner >= 2.2.1",
12
12
  "dill >= 0.3.5.1",
13
13
  "gpyreg >= 0.1.0",
14
14
  "imageio >= 2.13.5",
15
15
  "matplotlib >= 3.9.0",
16
- "numpy < 2.0.0",
16
+ "numpy >= 2.0.0",
17
17
  "plotly >= 5.11.0",
18
18
  "pytest >= 6.2.5",
19
19
  "pytest-mock >= 3.6.1",
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.coveragerc RENAMED
File without changes
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.coveragerc-html.css RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.gitattributes RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.gitignore RENAMED
File without changes
{pyvbmc-1.0.3 → pyvbmc-1.0.4}/.pre-commit-config.yaml RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/CITATION.cff RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/LICENSE RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/MANIFEST.in RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/README.md RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/examples/scripts/Makefile RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/logo.svg RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pylintrc RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/__init__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/__main__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/entropy/README.md RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/__init__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/prior.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/product.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/priors/scipy.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/README.md RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/__init__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/get_hpd.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/stats/kde_1d.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/X.txt RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/testing/vbmc/y.txt RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/README.md RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/__init__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/timer/timer.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/README.md RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/__init__.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/options.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/pyvbmc/vbmc/vbmc.py RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/setup.cfg RENAMED
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{pyvbmc-1.0.3 → pyvbmc-1.0.4}/setup.py RENAMED
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