PyTFBS 1.0.3__tar.gz → 1.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (14) hide show
  1. {pytfbs-1.0.3 → pytfbs-1.0.4}/PKG-INFO +5 -5
  2. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/PKG-INFO +5 -5
  3. {pytfbs-1.0.3 → pytfbs-1.0.4}/README.md +4 -4
  4. {pytfbs-1.0.3 → pytfbs-1.0.4}/pyproject.toml +1 -1
  5. {pytfbs-1.0.3 → pytfbs-1.0.4}/LICENSE +0 -0
  6. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/__init__.py +0 -0
  7. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/motif.py +0 -0
  8. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/predict.py +0 -0
  9. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/SOURCES.txt +0 -0
  10. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/dependency_links.txt +0 -0
  11. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/entry_points.txt +0 -0
  12. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/requires.txt +0 -0
  13. {pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/top_level.txt +0 -0
  14. {pytfbs-1.0.3 → pytfbs-1.0.4}/setup.cfg +0 -0
{pytfbs-1.0.3 → pytfbs-1.0.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: PyTFBS
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- Version: 1.0.3
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+ Version: 1.0.4
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  Summary: PyTFBS: A Python Package for Transcription Factor Binding Site Prediction
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  Author-email: Tinghua Huang <thua45@126.com>
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  License-Expression: MIT
@@ -57,13 +57,13 @@ models = motif.get_models('RFX2_HUMAN.H11MO.0.A')
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  print(models)
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  # predict one model
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 'out_file.txt')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 'out_file.txt')
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  # speed up using mutil-threading (for Windows OS only)
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, 'out_file.txt')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, 'out_file.txt')
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  # run prediction with user motif data
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  # the my_motif_dir should be organized as [[motif], [trace], [par]]
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', data_dir='my_motif_dir')
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', data_dir='my_motif_dir')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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  ```
{pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: PyTFBS
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- Version: 1.0.3
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+ Version: 1.0.4
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  Summary: PyTFBS: A Python Package for Transcription Factor Binding Site Prediction
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  Author-email: Tinghua Huang <thua45@126.com>
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  License-Expression: MIT
@@ -57,13 +57,13 @@ models = motif.get_models('RFX2_HUMAN.H11MO.0.A')
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  print(models)
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  # predict one model
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 'out_file.txt')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 'out_file.txt')
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  # speed up using mutil-threading (for Windows OS only)
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, 'out_file.txt')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, 'out_file.txt')
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  # run prediction with user motif data
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  # the my_motif_dir should be organized as [[motif], [trace], [par]]
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', data_dir='my_motif_dir')
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', data_dir='my_motif_dir')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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  ```
{pytfbs-1.0.3 → pytfbs-1.0.4}/README.md RENAMED
@@ -28,13 +28,13 @@ models = motif.get_models('RFX2_HUMAN.H11MO.0.A')
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  print(models)
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  # predict one model
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 'out_file.txt')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 'out_file.txt')
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  # speed up using mutil-threading (for Windows OS only)
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, 'out_file.txt')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, 'out_file.txt')
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  # run prediction with user motif data
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  # the my_motif_dir should be organized as [[motif], [trace], [par]]
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- predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', data_dir='my_motif_dir')
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- predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A_1231', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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+ predict.script('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', data_dir='my_motif_dir')
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+ predict.win_bin('CEBPB_HUMAN.H11MO.0.A', 'CEBPB_HUMAN.H11MO.0.A', 'input_seq_file.fasta', 64, data_dir='my_motif_dir')
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  ```
{pytfbs-1.0.3 → pytfbs-1.0.4}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "PyTFBS"
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- version = "1.0.3"
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+ version = "1.0.4"
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  license = "MIT" # SPDX expression
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  description = "PyTFBS: A Python Package for Transcription Factor Binding Site Prediction"
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  readme = "README.md"
{pytfbs-1.0.3 → pytfbs-1.0.4}/LICENSE RENAMED
File without changes
{pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/__init__.py RENAMED
File without changes
{pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/motif.py RENAMED
File without changes
{pytfbs-1.0.3 → pytfbs-1.0.4}/PyTFBS/predict.py RENAMED
File without changes
{pytfbs-1.0.3 → pytfbs-1.0.4}/setup.cfg RENAMED
File without changes