PySDM 3.0.0rc1__tar.gz → 3.0.0rc3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (979) hide show
  1. {pysdm-3.0.0rc1/pysdm.egg-info → pysdm-3.0.0rc3}/PKG-INFO +1 -1
  2. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/condensation_methods.py +18 -13
  3. pysdm-3.0.0rc3/PySDM/backends/impl_numba/methods/deposition_methods.py +350 -0
  4. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/test_helpers/scipy_ode_condensation_solver.py +4 -4
  5. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/condensation_methods.py +13 -13
  6. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/dynamics/vapour_deposition_on_ice.py +3 -2
  7. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/environments/kinematic_1d.py +1 -1
  8. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/environments/kinematic_2d.py +1 -1
  9. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/environments/parcel.py +1 -1
  10. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/initialisation/__init__.py +0 -1
  11. pysdm-3.0.0rc3/PySDM/initialisation/hygroscopic_equilibrium.py +198 -0
  12. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/particulator.py +4 -8
  13. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/docs/bibliography.json +2 -1
  14. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/docs/markdown/pysdm_landing.md +4 -3
  15. pysdm-3.0.0rc3/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb +19465 -0
  16. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Abade_and_Albuquerque_2024/settings.py +14 -20
  17. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Abade_and_Albuquerque_2024/simulation.py +27 -12
  18. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Abdul_Razzak_Ghan_2000/run_ARG_parcel.py +1 -1
  19. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Arabas_and_Shima_2017/simulation.py +1 -1
  20. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Arabas_et_al_2025/aida.ipynb +1 -1
  21. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Arabas_et_al_2025/commons.py +1 -0
  22. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Grabowski_and_Pawlowska_2023/simulation.py +1 -1
  23. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Graf_et_al_2019/figure_4.ipynb +2 -1
  24. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Lowe_et_al_2019/simulation.py +1 -1
  25. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Niedermeier_et_al_2014/simulation.py +1 -1
  26. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Pyrcel/simulation.py +1 -1
  27. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Spichtinger_et_al_2023/fig_B1.ipynb +145 -137
  28. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/examples/PySDM_examples/Spichtinger_et_al_2023/simulation.py +2 -1
  29. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3/pysdm.egg-info}/PKG-INFO +1 -1
  30. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/pysdm.egg-info/SOURCES.txt +2 -2
  31. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/smoke_tests/box/partmc/test_dry_wet_equilibration.py +1 -1
  32. pysdm-3.0.0rc3/tests/smoke_tests/parcel_c/abade_and_albuquerque_2024/test_fig_2.py +104 -0
  33. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/smoke_tests/parcel_c/abdul_razzak_ghan_2000/test_single_supersaturation_peak.py +1 -1
  34. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/condensation/test_parcel_sanity_checks.py +2 -1
  35. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_vapour_deposition_on_ice.py +147 -35
  36. pysdm-3.0.0rc3/tests/unit_tests/initialisation/test_hygroscopic_equilibrium.py +169 -0
  37. pysdm-3.0.0rc1/PySDM/backends/impl_numba/methods/deposition_methods.py +0 -171
  38. pysdm-3.0.0rc1/PySDM/initialisation/equilibrate_wet_radii.py +0 -129
  39. pysdm-3.0.0rc1/examples/PySDM_examples/Abade_and_Albuquerque_2024/fig_2.ipynb +0 -3441
  40. pysdm-3.0.0rc1/tests/smoke_tests/parcel_c/abade_and_albuquerque_2024/test_fig_2.py +0 -76
  41. pysdm-3.0.0rc1/tests/unit_tests/initialisation/test_equilibrate_wet_radii.py +0 -85
  42. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.binder/apt.txt +0 -0
  43. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.binder/postBuild +0 -0
  44. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.binder/requirements.txt +0 -0
  45. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.codecov.yml +0 -0
  46. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/dependabot.yml +0 -0
  47. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/cancel.yml +0 -0
  48. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/pdoc.yml +0 -0
  49. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/precommit.yml +0 -0
  50. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/pypi.yml +0 -0
  51. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/readme_snippets.yml +0 -0
  52. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/stale.yml +0 -0
  53. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.github/workflows/tests.yml +0 -0
  54. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.gitignore +0 -0
  55. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.gitmodules +0 -0
  56. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.pre-commit-config.yaml +0 -0
  57. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/.zenodo.json +0 -0
  58. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/LICENSE +0 -0
  59. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/__init__.py +0 -0
  60. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/__init__.py +0 -0
  61. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/chemistry/__init__.py +0 -0
  62. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/chemistry/acidity.py +0 -0
  63. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/chemistry/concentration.py +0 -0
  64. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/chemistry/hydrogen_ion_concentration.py +0 -0
  65. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/ice/__init__.py +0 -0
  66. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/ice/cooling_rate.py +0 -0
  67. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/ice/freezing_temperature.py +0 -0
  68. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/ice/immersed_surface_area.py +0 -0
  69. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/__init__.py +0 -0
  70. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/attribute.py +0 -0
  71. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/attribute_registry.py +0 -0
  72. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/base_attribute.py +0 -0
  73. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/cell_attribute.py +0 -0
  74. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/derived_attribute.py +0 -0
  75. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/dummy_attribute.py +0 -0
  76. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/extensive_attribute.py +0 -0
  77. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/intensive_attribute.py +0 -0
  78. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/maximum_attribute.py +0 -0
  79. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/mole_amount.py +0 -0
  80. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/impl/temperature_variation_option_attribute.py +0 -0
  81. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/isotopes/__init__.py +0 -0
  82. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/isotopes/delta.py +0 -0
  83. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/isotopes/moles.py +0 -0
  84. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/numerics/__init__.py +0 -0
  85. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/numerics/cell_id.py +0 -0
  86. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/numerics/cell_origin.py +0 -0
  87. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/numerics/position_in_cell.py +0 -0
  88. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/__init__.py +0 -0
  89. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/area.py +0 -0
  90. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/critical_saturation.py +0 -0
  91. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/critical_volume.py +0 -0
  92. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/dry_radius.py +0 -0
  93. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/dry_volume.py +0 -0
  94. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/equilibrium_saturation.py +0 -0
  95. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/heat.py +0 -0
  96. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/hygroscopicity.py +0 -0
  97. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/multiplicity.py +0 -0
  98. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/radius.py +0 -0
  99. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/relative_fall_velocity.py +0 -0
  100. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/reynolds_number.py +0 -0
  101. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/temperature.py +0 -0
  102. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/terminal_velocity.py +0 -0
  103. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/volume.py +0 -0
  104. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/attributes/physics/water_mass.py +0 -0
  105. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/__init__.py +0 -0
  106. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/__init__.py +0 -0
  107. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/backend_methods.py +0 -0
  108. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/freezing_attributes.py +0 -0
  109. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/index.py +0 -0
  110. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/indexed_storage.py +0 -0
  111. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/pair_indicator.py +0 -0
  112. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/pairwise_storage.py +0 -0
  113. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/random_common.py +0 -0
  114. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_common/storage_utils.py +0 -0
  115. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/__init__.py +0 -0
  116. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/atomic_operations.py +0 -0
  117. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/conf.py +0 -0
  118. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/__init__.py +0 -0
  119. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/chemistry_methods.py +0 -0
  120. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/collisions_methods.py +0 -0
  121. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/displacement_methods.py +0 -0
  122. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/fragmentation_methods.py +0 -0
  123. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/freezing_methods.py +0 -0
  124. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/index_methods.py +0 -0
  125. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/isotope_methods.py +0 -0
  126. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/moments_methods.py +0 -0
  127. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/pair_methods.py +0 -0
  128. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/physics_methods.py +0 -0
  129. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/seeding_methods.py +0 -0
  130. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/methods/terminal_velocity_methods.py +0 -0
  131. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/random.py +0 -0
  132. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/storage.py +0 -0
  133. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/storage_impl.py +0 -0
  134. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/test_helpers/__init__.py +0 -0
  135. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/toms748.py +0 -0
  136. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_numba/warnings.py +0 -0
  137. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/__init__.py +0 -0
  138. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/bisection.py +0 -0
  139. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/conf.py +0 -0
  140. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/__init__.py +0 -0
  141. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/collisions_methods.py +0 -0
  142. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/displacement_methods.py +0 -0
  143. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/freezing_methods.py +0 -0
  144. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/index_methods.py +0 -0
  145. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/isotope_methods.py +0 -0
  146. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/moments_methods.py +0 -0
  147. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/pair_methods.py +0 -0
  148. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/physics_methods.py +0 -0
  149. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/terminal_velocity_methods.py +0 -0
  150. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/methods/thrust_rtc_backend_methods.py +0 -0
  151. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/nice_thrust.py +0 -0
  152. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/random.py +0 -0
  153. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/storage.py +0 -0
  154. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/test_helpers/__init__.py +0 -0
  155. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/test_helpers/cpp2python.py +0 -0
  156. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/test_helpers/fake_thrust_rtc.py +0 -0
  157. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/impl_thrust_rtc/test_helpers/flag.py +0 -0
  158. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/numba.py +0 -0
  159. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/backends/thrust_rtc.py +0 -0
  160. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/builder.py +0 -0
  161. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/dynamics/__init__.py +0 -0
  162. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/PySDM/dynamics/ambient_thermodynamics.py +0 -0
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  894. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/displacement/test_advection.py +0 -0
  895. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/displacement/test_courant_product.py +0 -0
  896. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/displacement/test_sedimentation.py +0 -0
  897. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_eulerian_advection.py +0 -0
  898. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_freezing.py +0 -0
  899. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_impl_register_dynamic.py +0 -0
  900. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_isotopic_fractionation.py +0 -0
  901. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_relaxed_velocity.py +0 -0
  902. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_seeding.py +0 -0
  903. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/dynamics/test_terminal_velocity.py +0 -0
  904. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/environments/__init__.py +0 -0
  905. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/environments/test_impl.py +0 -0
  906. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/environments/test_moist.py +0 -0
  907. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/exporters/__init__.py +0 -0
  908. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/exporters/test_vtk_exporter.py +0 -0
  909. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/impl/__init__.py +0 -0
  910. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/impl/test_camel_case.py +0 -0
  911. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/impl/test_mesh.py +0 -0
  912. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/impl/test_moments.py +0 -0
  913. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/impl/test_particle_attributes.py +0 -0
  914. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/__init__.py +0 -0
  915. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_aerosol_init.py +0 -0
  916. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_discretise_multiplicities.py +0 -0
  917. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_init_fall_momenta.py +0 -0
  918. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_spatial_discretisation.py +0 -0
  919. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_spectra_lognormal.py +0 -0
  920. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_spectral_discretisation.py +0 -0
  921. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/initialisation/test_spectro_glacial_discretisation.py +0 -0
  922. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/__init__.py +0 -0
  923. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_accommodation_coefficients.py +0 -0
  924. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_air_dynamic_viscosity.py +0 -0
  925. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_bulk_phase_partitioning.py +0 -0
  926. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_constants.py +0 -0
  927. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_diffusion_ice_capacity.py +0 -0
  928. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_dimensional_analysis.py +0 -0
  929. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_drop_growth.py +0 -0
  930. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_fake_unit_registry.py +0 -0
  931. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_formulae.py +0 -0
  932. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_fragmentation_functions.py +0 -0
  933. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_freezing_temperature_spectra.py +0 -0
  934. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_homogeneous_nucleation_rates.py +0 -0
  935. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_hydrostatics_var_g.py +0 -0
  936. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_hygroscopicity_fierce_diagrams.py +0 -0
  937. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_diffusivity_ratios.py +0 -0
  938. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_equilibrium_fractionation_factors.py +0 -0
  939. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_kinetic_fractionation_factors.py +0 -0
  940. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_meteoric_water_line.py +0 -0
  941. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_ratio_evolution.py +0 -0
  942. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_relaxation_timescale.py +0 -0
  943. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_temperature_inference.py +0 -0
  944. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_isotope_ventilation_ratio.py +0 -0
  945. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_latent_heat.py +0 -0
  946. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_optical.py +0 -0
  947. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_particle_shape_and_density.py +0 -0
  948. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_saturation_vapour_pressure.py +0 -0
  949. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_spectra.py +0 -0
  950. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_spectra_top_hat.py +0 -0
  951. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_surface_tension.py +0 -0
  952. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_thermal_conductivity.py +0 -0
  953. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_trivia.py +0 -0
  954. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/physics/test_ventilation_coefficient.py +0 -0
  955. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/__init__.py +0 -0
  956. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_activation_criteria.py +0 -0
  957. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_ambient_relative_humidity.py +0 -0
  958. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_arbitrary_moment.py +0 -0
  959. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_averaged_terminal_velocity.py +0 -0
  960. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_collision_rates.py +0 -0
  961. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_concentration_product.py +0 -0
  962. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_cooling_rate.py +0 -0
  963. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_effective_radii.py +0 -0
  964. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_impl.py +0 -0
  965. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_mixed_phase_moments.py +0 -0
  966. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_parcel_liquid_water_path.py +0 -0
  967. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_particle_size_product.py +0 -0
  968. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_particle_size_spectrum.py +0 -0
  969. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/products/test_surface_precipitation.py +0 -0
  970. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/test_builder.py +0 -0
  971. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/test_formulae.py +0 -0
  972. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/test_imports.py +0 -0
  973. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tests/unit_tests/test_particulator.py +0 -0
  974. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/README.md +0 -0
  975. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/collisions/collection_droplet.svg +0 -0
  976. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/collisions/collisions_playground.ipynb +0 -0
  977. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/condensation/condensation_playground.ipynb +0 -0
  978. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/condensation/kohler_curve.svg +0 -0
  979. {pysdm-3.0.0rc1 → pysdm-3.0.0rc3}/tutorials/wikipedia/sdm.ipynb +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pysdm
3
- Version: 3.0.0rc1
3
+ Version: 3.0.0rc3
4
4
  Summary: Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
5
5
  Author-email: "https://github.com/open-atmos/PySDM/graphs/contributors" <sylwester.arabas@agh.edu.pl>
6
6
  License-Expression: GPL-3.0-only
@@ -21,7 +21,7 @@ _Counters = namedtuple(
21
21
  _Attributes = namedtuple(
22
22
  typename="_Attributes",
23
23
  field_names=(
24
- "water_mass",
24
+ "signed_water_mass",
25
25
  "v_cr",
26
26
  "multiplicity",
27
27
  "vdry",
@@ -60,7 +60,7 @@ class CondensationMethods(BackendMethods):
60
60
  n_cell=kwargs["n_cell"],
61
61
  cell_start_arg=kwargs["cell_start_arg"].data,
62
62
  attributes=_Attributes(
63
- water_mass=kwargs["water_mass"].data,
63
+ signed_water_mass=kwargs["signed_water_mass"].data,
64
64
  v_cr=kwargs["v_cr"].data,
65
65
  multiplicity=kwargs["multiplicity"].data,
66
66
  vdry=kwargs["vdry"].data,
@@ -273,7 +273,7 @@ class CondensationMethods(BackendMethods):
273
273
  ):
274
274
  timestep /= n_substeps
275
275
  ml_old = calculate_ml_old(
276
- attributes.water_mass, attributes.multiplicity, cell_idx
276
+ attributes.signed_water_mass, attributes.multiplicity, cell_idx
277
277
  )
278
278
  count_activating, count_deactivating, count_ripening = 0, 0, 0
279
279
  RH_max = 0
@@ -358,11 +358,11 @@ class CondensationMethods(BackendMethods):
358
358
  @staticmethod
359
359
  def make_calculate_ml_old(jit_flags):
360
360
  @numba.njit(**jit_flags)
361
- def calculate_ml_old(water_mass, multiplicity, cell_idx):
361
+ def calculate_ml_old(signed_water_mass, multiplicity, cell_idx):
362
362
  result = 0
363
363
  for drop in cell_idx:
364
- if water_mass[drop] > 0:
365
- result += multiplicity[drop] * water_mass[drop]
364
+ if signed_water_mass[drop] > 0:
365
+ result += multiplicity[drop] * signed_water_mass[drop]
366
366
  return result
367
367
 
368
368
  return calculate_ml_old
@@ -429,12 +429,14 @@ class CondensationMethods(BackendMethods):
429
429
  lambdaK = formulae.diffusion_kinetics__lambdaK(T, p)
430
430
  lambdaD = formulae.diffusion_kinetics__lambdaD(DTp, T)
431
431
  for drop in cell_idx:
432
- if attributes.water_mass[drop] <= 0:
432
+ if attributes.signed_water_mass[drop] <= 0:
433
433
  continue
434
434
  v_drop = formulae.particle_shape_and_density__mass_to_volume(
435
- attributes.water_mass[drop]
435
+ attributes.signed_water_mass[drop]
436
+ )
437
+ x_old = formulae.diffusion_coordinate__x(
438
+ attributes.signed_water_mass[drop]
436
439
  )
437
- x_old = formulae.diffusion_coordinate__x(attributes.water_mass[drop])
438
440
  r_old = formulae.trivia__radius(v_drop)
439
441
  x_insane = formulae.diffusion_coordinate__x(
440
442
  formulae.particle_shape_and_density__volume_to_mass(
@@ -559,13 +561,16 @@ class CondensationMethods(BackendMethods):
559
561
  )
560
562
  result += attributes.multiplicity[drop] * mass_new
561
563
  if not fake:
562
- if mass_new > mass_cr and mass_new > attributes.water_mass[drop]:
564
+ if (
565
+ mass_new > mass_cr
566
+ and mass_new > attributes.signed_water_mass[drop]
567
+ ):
563
568
  n_activated_and_growing += attributes.multiplicity[drop]
564
- if mass_new > mass_cr > attributes.water_mass[drop]:
569
+ if mass_new > mass_cr > attributes.signed_water_mass[drop]:
565
570
  n_activating += attributes.multiplicity[drop]
566
- if mass_new < mass_cr < attributes.water_mass[drop]:
571
+ if mass_new < mass_cr < attributes.signed_water_mass[drop]:
567
572
  n_deactivating += attributes.multiplicity[drop]
568
- attributes.water_mass[drop] = mass_new
573
+ attributes.signed_water_mass[drop] = mass_new
569
574
  n_ripening = n_activated_and_growing if n_deactivating > 0 else 0
570
575
  return result, success, n_activating, n_deactivating, n_ripening
571
576
 
@@ -0,0 +1,350 @@
1
+ """basic water vapor deposition on ice for CPU backend, for Howell factor see:
2
+ [Howell 1949](https://doi.org/10.1175/1520-0469(1949)006%3C0134:TGOCDI%3E2.0.CO;2)
3
+ """
4
+
5
+ from functools import cached_property
6
+ import numba
7
+ import numpy as np
8
+
9
+ from PySDM.backends.impl_common.backend_methods import BackendMethods
10
+
11
+
12
+ # TODO #1524
13
+ # pylint: disable=too-many-arguments,too-many-locals,too-many-statements
14
+
15
+
16
+ class DepositionMethods(BackendMethods): # pylint:disable=too-few-public-methods
17
+ @cached_property
18
+ def _deposition(self):
19
+ assert self.formulae.particle_shape_and_density.supports_mixed_phase()
20
+
21
+ formulae = self.formulae_flattened
22
+ multiplier = 2
23
+ midpoint = True
24
+ rel_tol_rh = 1e-2
25
+ fuse = 16
26
+
27
+ @numba.njit(**{**self.default_jit_flags, **{"parallel": False}})
28
+ def calc_saturation_ratio_ice_temperature_and_pressure(
29
+ vapour_mixing_ratio, dry_air_potential_temperature, dry_air_density
30
+ ):
31
+ temperature = formulae.state_variable_triplet__T(
32
+ rhod=dry_air_density,
33
+ thd=dry_air_potential_temperature,
34
+ )
35
+ total_pressure = formulae.state_variable_triplet__p(
36
+ rhod=dry_air_density,
37
+ T=temperature,
38
+ water_vapour_mixing_ratio=vapour_mixing_ratio,
39
+ )
40
+ vapour_partial_pressure = formulae.state_variable_triplet__pv(
41
+ p=total_pressure,
42
+ water_vapour_mixing_ratio=vapour_mixing_ratio,
43
+ )
44
+ saturation_ratio_ice = (
45
+ vapour_partial_pressure
46
+ / formulae.saturation_vapour_pressure__pvs_ice(temperature)
47
+ )
48
+ return saturation_ratio_ice, temperature, total_pressure
49
+
50
+ @numba.njit(**{**self.default_jit_flags, **{"parallel": False}})
51
+ def mass_deposition_rate_per_droplet(
52
+ temperature: float,
53
+ rho_d: float,
54
+ signed_mass_old: float,
55
+ latent_heat_sub: float,
56
+ saturation_ratio_ice: float,
57
+ pressure: float,
58
+ ):
59
+ radius = formulae.particle_shape_and_density__mass_to_radius(
60
+ signed_mass_old
61
+ )
62
+ pvs_ice = formulae.saturation_vapour_pressure__pvs_ice(temperature)
63
+
64
+ capacity = formulae.diffusion_ice_capacity__capacity(abs(signed_mass_old))
65
+
66
+ mass_ventilation_factor = 1 # TODO #1655
67
+ heat_ventilation_factor = mass_ventilation_factor # TODO #1588
68
+
69
+ Dv_const = formulae.diffusion_thermics__D(temperature, pressure)
70
+ lambdaD = formulae.diffusion_ice_kinetics__lambdaD(temperature, pressure)
71
+ diffusion_coefficient = formulae.diffusion_ice_kinetics__D(
72
+ Dv_const, radius, lambdaD, temperature
73
+ )
74
+
75
+ Ka_const = formulae.diffusion_thermics__K(temperature, pressure)
76
+ lambdaK = formulae.diffusion_ice_kinetics__lambdaK(temperature, pressure)
77
+ thermal_conductivity = formulae.diffusion_ice_kinetics__K(
78
+ Ka_const, radius, lambdaK, temperature, rho_d
79
+ )
80
+
81
+ Fk = formulae.drop_growth__Fk(
82
+ T=temperature,
83
+ K=thermal_conductivity * heat_ventilation_factor,
84
+ lv=latent_heat_sub,
85
+ )
86
+ Fd = formulae.drop_growth__Fd(
87
+ T=temperature,
88
+ D=diffusion_coefficient * mass_ventilation_factor,
89
+ pvs=pvs_ice,
90
+ )
91
+ howell_factor_x_diffcoef_x_rhovsice_x_icess = (
92
+ formulae.drop_growth__r_dr_dt(
93
+ RH_eq=1,
94
+ RH=saturation_ratio_ice,
95
+ Fk=Fk,
96
+ Fd=Fd,
97
+ )
98
+ * formulae.constants.rho_w
99
+ )
100
+
101
+ mass_deposition_rate = (
102
+ 4 * np.pi * capacity * howell_factor_x_diffcoef_x_rhovsice_x_icess
103
+ )
104
+ if mass_deposition_rate > 1:
105
+ print(
106
+ radius,
107
+ Fk,
108
+ Fd,
109
+ mass_deposition_rate,
110
+ howell_factor_x_diffcoef_x_rhovsice_x_icess,
111
+ pvs_ice,
112
+ )
113
+ assert False
114
+ return mass_deposition_rate
115
+
116
+ @numba.njit(**{**self.default_jit_flags, **{"parallel": False}})
117
+ def _loop(
118
+ fake,
119
+ temperature,
120
+ rhod,
121
+ thd,
122
+ signed_water_mass,
123
+ saturation_ratio_ice,
124
+ total_pressure,
125
+ multiplicity,
126
+ sub_time_step,
127
+ mass_of_dry_air,
128
+ ):
129
+ latent_heat_sub = formulae.latent_heat_sublimation__ls(temperature)
130
+ delta_rv = 0
131
+ for i, ksi in enumerate(multiplicity):
132
+ if not formulae.trivia__unfrozen(signed_water_mass[i]):
133
+ mass_deposition_rate = mass_deposition_rate_per_droplet(
134
+ temperature=temperature,
135
+ rho_d=rhod,
136
+ signed_mass_old=signed_water_mass[i],
137
+ latent_heat_sub=latent_heat_sub,
138
+ saturation_ratio_ice=saturation_ratio_ice,
139
+ pressure=total_pressure,
140
+ )
141
+ delta_rv += (
142
+ -mass_deposition_rate * ksi * sub_time_step / mass_of_dry_air
143
+ )
144
+ if not fake:
145
+ x_old = formulae.diffusion_coordinate__x(-signed_water_mass[i])
146
+ dx_dt_old = formulae.diffusion_coordinate__dx_dt(
147
+ -signed_water_mass[i], mass_deposition_rate
148
+ )
149
+ x_new = formulae.trivia__explicit_euler(
150
+ x_old, sub_time_step, dx_dt_old
151
+ )
152
+ signed_water_mass[i] = -formulae.diffusion_coordinate__mass(
153
+ x_new
154
+ )
155
+ if x_new > 1:
156
+ print(x_old, dx_dt_old, x_new, signed_water_mass[i])
157
+ assert False
158
+ delta_thd = (
159
+ formulae.state_variable_triplet__dthd_dt(
160
+ rhod=rhod,
161
+ thd=thd,
162
+ T=temperature,
163
+ d_water_vapour_mixing_ratio__dt=delta_rv / sub_time_step,
164
+ lv=latent_heat_sub,
165
+ )
166
+ * sub_time_step
167
+ )
168
+ if delta_rv == 0:
169
+ assert delta_thd == 0
170
+ else:
171
+ assert (delta_rv < 0 < delta_thd) or (delta_rv > 0 > delta_thd)
172
+ return delta_rv, delta_thd
173
+
174
+ @numba.njit(**{**self.default_jit_flags, **{"parallel": False}})
175
+ def body( # pylint: disable=too-many-arguments
176
+ *,
177
+ adaptive,
178
+ multiplicity,
179
+ signed_water_mass,
180
+ current_vapour_mixing_ratio,
181
+ current_dry_air_density,
182
+ current_dry_potential_temperature,
183
+ cell_volume,
184
+ time_step,
185
+ cell_id,
186
+ # to be modified
187
+ predicted_vapour_mixing_ratio,
188
+ predicted_dry_potential_temperature,
189
+ predicted_dry_air_density,
190
+ ):
191
+ """simplest adaptivity:
192
+ - global dt - no cell-wise logic (we don't have any test/example for it!)
193
+ - no mechanism to retain dt value over timesteps
194
+ - explicit Euler mass integration (vs. implicit in condensation)
195
+ """
196
+ # pylint: disable=too-many-locals
197
+ n_substeps = 1
198
+ cid = cell_id[0] # TODO #1524: add support for multi-cell environments
199
+
200
+ rv_tendency = (
201
+ predicted_vapour_mixing_ratio[cid] - current_vapour_mixing_ratio[cid]
202
+ ) / time_step
203
+ thd_tendency = (
204
+ predicted_dry_potential_temperature[cid]
205
+ - current_dry_potential_temperature[cid]
206
+ ) / time_step
207
+ rhod_tendency = (
208
+ predicted_dry_air_density[cid] - current_dry_air_density[cid]
209
+ ) / time_step
210
+ dry_air_mass_mean = (
211
+ cell_volume
212
+ * (predicted_dry_air_density[cid] + current_dry_air_density[cid])
213
+ / 2
214
+ )
215
+
216
+ if adaptive:
217
+ n_substeps = 1 / multiplier
218
+ delta_rh_long = np.nan
219
+ for burnout in range(fuse + 1):
220
+ if burnout == fuse:
221
+ assert False
222
+ sub_time_step = time_step / n_substeps
223
+ rhod = (
224
+ current_dry_air_density[cid]
225
+ + rhod_tendency * (0.5 if midpoint else 1) * sub_time_step
226
+ )
227
+ rv = (
228
+ current_vapour_mixing_ratio[cid]
229
+ + rv_tendency * (0.5 if midpoint else 1) * sub_time_step
230
+ )
231
+ thd = (
232
+ current_dry_potential_temperature[cid]
233
+ + thd_tendency * (0.5 if midpoint else 1) * sub_time_step
234
+ )
235
+
236
+ saturation_ratio_ice, temperature, total_pressure = (
237
+ calc_saturation_ratio_ice_temperature_and_pressure(
238
+ vapour_mixing_ratio=rv,
239
+ dry_air_potential_temperature=thd,
240
+ dry_air_density=rhod,
241
+ )
242
+ )
243
+ delta_rv, delta_thd = _loop(
244
+ fake=True,
245
+ temperature=temperature,
246
+ rhod=rhod,
247
+ thd=thd,
248
+ signed_water_mass=signed_water_mass,
249
+ saturation_ratio_ice=saturation_ratio_ice,
250
+ total_pressure=total_pressure,
251
+ multiplicity=multiplicity,
252
+ sub_time_step=sub_time_step,
253
+ mass_of_dry_air=dry_air_mass_mean,
254
+ )
255
+ delta_rh_short = (
256
+ calc_saturation_ratio_ice_temperature_and_pressure(
257
+ vapour_mixing_ratio=rv + delta_rv,
258
+ dry_air_potential_temperature=thd + delta_thd,
259
+ dry_air_density=rhod,
260
+ )[0]
261
+ - saturation_ratio_ice
262
+ )
263
+ if (
264
+ n_substeps < 1
265
+ or rv < -delta_rv
266
+ or not formulae.trivia__within_tolerance(
267
+ abs(delta_rh_long - multiplier * delta_rh_short),
268
+ saturation_ratio_ice,
269
+ rel_tol_rh,
270
+ )
271
+ ):
272
+ delta_rh_long = delta_rh_short
273
+ n_substeps *= multiplier
274
+ else:
275
+ break
276
+ sub_time_step = time_step / n_substeps
277
+
278
+ rv = current_vapour_mixing_ratio[cid]
279
+ thd = current_dry_potential_temperature[cid]
280
+ rhod = current_dry_air_density[cid]
281
+
282
+ assert n_substeps == int(n_substeps)
283
+ for _ in range(int(n_substeps)):
284
+ rv += sub_time_step * rv_tendency * (0.5 if midpoint else 1)
285
+ thd += sub_time_step * thd_tendency * (0.5 if midpoint else 1)
286
+ rhod += sub_time_step * rhod_tendency * (0.5 if midpoint else 1)
287
+
288
+ saturation_ratio_ice, temperature, total_pressure = (
289
+ calc_saturation_ratio_ice_temperature_and_pressure(
290
+ vapour_mixing_ratio=rv,
291
+ dry_air_potential_temperature=thd,
292
+ dry_air_density=rhod,
293
+ )
294
+ )
295
+ delta_rv, delta_thd = _loop(
296
+ fake=False,
297
+ temperature=temperature,
298
+ rhod=rhod,
299
+ thd=thd,
300
+ signed_water_mass=signed_water_mass,
301
+ saturation_ratio_ice=saturation_ratio_ice,
302
+ total_pressure=total_pressure,
303
+ multiplicity=multiplicity,
304
+ sub_time_step=sub_time_step,
305
+ mass_of_dry_air=dry_air_mass_mean,
306
+ )
307
+ thd += delta_thd
308
+ rv += delta_rv
309
+ assert rv >= 0
310
+
311
+ if midpoint:
312
+ thd += sub_time_step * thd_tendency / 2
313
+ rv += sub_time_step * rv_tendency / 2
314
+ rhod += sub_time_step * rhod_tendency / 2
315
+
316
+ predicted_dry_potential_temperature[cid] = thd
317
+ predicted_vapour_mixing_ratio[cid] = rv
318
+
319
+ return body
320
+
321
+ def deposition( # pylint: disable=too-many-locals
322
+ self,
323
+ *,
324
+ adaptive,
325
+ multiplicity,
326
+ signed_water_mass,
327
+ current_vapour_mixing_ratio,
328
+ current_dry_air_density,
329
+ current_dry_potential_temperature,
330
+ cell_volume,
331
+ time_step,
332
+ cell_id,
333
+ predicted_vapour_mixing_ratio,
334
+ predicted_dry_potential_temperature,
335
+ predicted_dry_air_density,
336
+ ):
337
+ self._deposition(
338
+ adaptive=adaptive,
339
+ multiplicity=multiplicity.data,
340
+ signed_water_mass=signed_water_mass.data,
341
+ current_vapour_mixing_ratio=current_vapour_mixing_ratio.data,
342
+ current_dry_air_density=current_dry_air_density.data,
343
+ current_dry_potential_temperature=current_dry_potential_temperature.data,
344
+ cell_volume=cell_volume,
345
+ time_step=time_step,
346
+ cell_id=cell_id.data,
347
+ predicted_vapour_mixing_ratio=predicted_vapour_mixing_ratio.data,
348
+ predicted_dry_potential_temperature=predicted_dry_potential_temperature.data,
349
+ predicted_dry_air_density=predicted_dry_air_density.data,
350
+ )
@@ -42,7 +42,7 @@ def _condensation(
42
42
  n_cell=particulator.mesh.n_cell,
43
43
  cell_start_arg=particulator.attributes.cell_start.data,
44
44
  attributes=_Attributes(
45
- water_mass=particulator.attributes["water mass"].data,
45
+ signed_water_mass=particulator.attributes["signed water mass"].data,
46
46
  v_cr=None,
47
47
  multiplicity=particulator.attributes["multiplicity"].data,
48
48
  vdry=particulator.attributes["dry volume"].data,
@@ -242,7 +242,7 @@ def _make_solve(formulae): # pylint: disable=too-many-statements,too-many-local
242
242
  y0 = np.empty(n_sd_in_cell + idx_x)
243
243
  y0[idx_thd] = thd
244
244
  y0[idx_x:] = jit_formulae.diffusion_coordinate__x(
245
- attributes.water_mass[cell_idx]
245
+ attributes.signed_water_mass[cell_idx]
246
246
  )
247
247
  total_water_mixing_ratio = (
248
248
  water_vapour_mixing_ratio
@@ -288,12 +288,12 @@ def _make_solve(formulae): # pylint: disable=too-many-statements,too-many-local
288
288
 
289
289
  m_new = 0
290
290
  for i in range(n_sd_in_cell):
291
- attributes.water_mass[cell_idx[i]] = (
291
+ attributes.signed_water_mass[cell_idx[i]] = (
292
292
  jit_formulae.diffusion_coordinate__mass(y1[idx_x + i])
293
293
  )
294
294
  m_new += (
295
295
  attributes.multiplicity[cell_idx[i]]
296
- * attributes.water_mass[cell_idx[i]]
296
+ * attributes.signed_water_mass[cell_idx[i]]
297
297
  )
298
298
 
299
299
  return (
@@ -40,10 +40,10 @@ class CondensationMethods(
40
40
  @cached_property
41
41
  def __calculate_m_l(self):
42
42
  return trtc.For(
43
- param_names=("ml", "water_mass", "multiplicity", "cell_id"),
43
+ param_names=("ml", "signed_water_mass", "multiplicity", "cell_id"),
44
44
  name_iter="i",
45
45
  body="""
46
- atomicAdd((real_type*) &ml[cell_id[i]], multiplicity[i] * water_mass[i]);
46
+ atomicAdd((real_type*) &ml[cell_id[i]], multiplicity[i] * signed_water_mass[i]);
47
47
  """.replace(
48
48
  "real_type", self._get_c_type()
49
49
  ),
@@ -71,7 +71,7 @@ class CondensationMethods(
71
71
  const = phys.constants
72
72
  return trtc.For(
73
73
  param_names=(
74
- "water_mass",
74
+ "signed_water_mass",
75
75
  "vdry",
76
76
  *CondensationMethods.keys,
77
77
  "_kappa",
@@ -135,9 +135,9 @@ class CondensationMethods(
135
135
  auto _schmidt_number = schmidt_number[cell_id[i]];
136
136
 
137
137
  auto v_old = {phys.particle_shape_and_density.mass_to_volume.c_inline(
138
- mass="water_mass[i]"
138
+ mass="signed_water_mass[i]"
139
139
  )};
140
- auto x_old = {phys.diffusion_coordinate.x.c_inline(mass="water_mass[i]")};
140
+ auto x_old = {phys.diffusion_coordinate.x.c_inline(mass="signed_water_mass[i]")};
141
141
  auto r_old = {phys.trivia.radius.c_inline(volume="v_old")};
142
142
  auto m_insane = {phys.particle_shape_and_density.volume_to_mass.c_inline(volume="vdry[i] / 100")};
143
143
  auto x_insane = {phys.diffusion_coordinate.x.c_inline(mass="m_insane")};
@@ -187,7 +187,7 @@ class CondensationMethods(
187
187
  )};
188
188
  dm_dt_old = {phys.particle_shape_and_density.dm_dt.c_inline(r="r_old", r_dr_dt="r_dr_dt_old")};
189
189
  dx_old = dt * {phys.diffusion_coordinate.dx_dt.c_inline(
190
- m="water_mass[i]", dm_dt="dm_dt_old"
190
+ m="signed_water_mass[i]", dm_dt="dm_dt_old"
191
191
  )};
192
192
  }}
193
193
  else {{
@@ -241,7 +241,7 @@ class CondensationMethods(
241
241
  x_new = x_old;
242
242
  }}
243
243
  }}
244
- water_mass[i] = {phys.diffusion_coordinate.mass.c_inline(x="x_new")};
244
+ signed_water_mass[i] = {phys.diffusion_coordinate.mass.c_inline(x="x_new")};
245
245
  """.replace(
246
246
  "real_type", self._get_c_type()
247
247
  ),
@@ -379,11 +379,11 @@ class CondensationMethods(
379
379
  ),
380
380
  )
381
381
 
382
- def calculate_m_l(self, ml, water_mass, multiplicity, cell_id):
382
+ def calculate_m_l(self, ml, signed_water_mass, multiplicity, cell_id):
383
383
  ml[:] = 0
384
384
  self.__calculate_m_l.launch_n(
385
385
  n=len(multiplicity),
386
- args=(ml.data, water_mass.data, multiplicity.data, cell_id.data),
386
+ args=(ml.data, signed_water_mass.data, multiplicity.data, cell_id.data),
387
387
  )
388
388
 
389
389
  # pylint: disable=unused-argument,too-many-locals
@@ -394,7 +394,7 @@ class CondensationMethods(
394
394
  solver,
395
395
  n_cell,
396
396
  cell_start_arg,
397
- water_mass,
397
+ signed_water_mass,
398
398
  v_cr,
399
399
  multiplicity,
400
400
  vdry,
@@ -450,7 +450,7 @@ class CondensationMethods(
450
450
  ),
451
451
  )
452
452
  timestep /= n_substeps
453
- self.calculate_m_l(self.ml_old, water_mass, multiplicity, cell_id)
453
+ self.calculate_m_l(self.ml_old, signed_water_mass, multiplicity, cell_id)
454
454
 
455
455
  for _ in range(n_substeps):
456
456
  self.__pre.launch_n(
@@ -472,7 +472,7 @@ class CondensationMethods(
472
472
  self.__update_drop_masses.launch_n(
473
473
  n=len(multiplicity),
474
474
  args=(
475
- water_mass.data,
475
+ signed_water_mass.data,
476
476
  vdry.data,
477
477
  *self.vars_data.values(),
478
478
  kappa.data,
@@ -485,7 +485,7 @@ class CondensationMethods(
485
485
  reynolds_number.data,
486
486
  ),
487
487
  )
488
- self.calculate_m_l(self.ml_new, water_mass, multiplicity, cell_id)
488
+ self.calculate_m_l(self.ml_new, signed_water_mass, multiplicity, cell_id)
489
489
  self.__post.launch_n(
490
490
  n=n_cell,
491
491
  args=(
@@ -5,9 +5,10 @@ from PySDM.dynamics.impl import register_dynamic
5
5
 
6
6
  @register_dynamic()
7
7
  class VapourDepositionOnIce:
8
- def __init__(self):
8
+ def __init__(self, adaptive: bool = True):
9
9
  """called by the user while building a particulator"""
10
10
  self.particulator = None
11
+ self.adaptive = adaptive
11
12
 
12
13
  def register(self, *, builder):
13
14
  """called by the builder"""
@@ -17,4 +18,4 @@ class VapourDepositionOnIce:
17
18
 
18
19
  def __call__(self):
19
20
  """called by the particulator during simulation"""
20
- self.particulator.deposition()
21
+ self.particulator.deposition(adaptive=self.adaptive)
@@ -8,7 +8,7 @@ import numpy as np
8
8
  from PySDM.environments.impl.moist import Moist
9
9
 
10
10
  from PySDM.impl import arakawa_c
11
- from PySDM.initialisation.equilibrate_wet_radii import equilibrate_wet_radii
11
+ from PySDM.initialisation.hygroscopic_equilibrium import equilibrate_wet_radii
12
12
  from PySDM.environments.impl import register_environment
13
13
 
14
14
 
@@ -7,7 +7,7 @@ import numpy as np
7
7
 
8
8
  from PySDM.environments.impl.moist import Moist
9
9
  from PySDM.impl.mesh import Mesh
10
- from PySDM.initialisation.equilibrate_wet_radii import (
10
+ from PySDM.initialisation.hygroscopic_equilibrium import (
11
11
  default_rtol,
12
12
  equilibrate_wet_radii,
13
13
  )
@@ -8,7 +8,7 @@ import numpy as np
8
8
 
9
9
  from PySDM.environments.impl.moist import Moist
10
10
  from PySDM.impl.mesh import Mesh
11
- from PySDM.initialisation.equilibrate_wet_radii import (
11
+ from PySDM.initialisation.hygroscopic_equilibrium import (
12
12
  default_rtol,
13
13
  equilibrate_wet_radii,
14
14
  )
@@ -5,7 +5,6 @@ wet radii equilibration
5
5
 
6
6
  from . import sampling, spectra
7
7
  from .discretise_multiplicities import discretise_multiplicities
8
- from .equilibrate_wet_radii import equilibrate_wet_radii
9
8
  from .init_fall_momenta import init_fall_momenta
10
9
 
11
10
  from . import aerosol_composition # isort:skip