PySDM 2.89__tar.gz → 2.90__tar.gz

pysdm-2.90/.github/workflows/projects.yml

@@ -0,0 +1,19 @@
+name: Add new issues and pull requests to project board
+
+on:
+  issues:
+    types:
+      - opened
+  pull_request:
+    types:
+      - opened
+
+jobs:
+  add-to-project:
+    name: Add to project
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/add-to-project@v1.0.2
+        with:
+          project-url: https://github.com/orgs/open-atmos/projects/6
+          github-token: ${{ secrets.ADD_TO_PROJECT_PAT }}

{pysdm-2.89 → pysdm-2.90}/.github/workflows/tests.yml

@@ -186,7 +186,7 @@ jobs:
           python-version: ${{ matrix.python-version }}
       - run: |
           echo pip_user_site=$(python -c "import sysconfig; print(sysconfig.get_path('purelib'))") >> $GITHUB_ENV
-          echo toml_ci_md5=$(cat pyproject.toml setup.py examples/pyproject.toml examples/setup.py tests/devops_tests/requirements.txt .github/workflows/tests+artifacts+pypi.yml \
+          echo toml_ci_md5=$(cat pyproject.toml setup.py examples/pyproject.toml examples/setup.py tests/devops_tests/requirements.txt .github/workflows/tests.yml \
           | python -c "import hashlib;print(hashlib.md5(open(0,'rb').read()).hexdigest())") >> $GITHUB_ENV
       - uses: actions/cache@v4
         id: cache
@@ -225,7 +225,7 @@ jobs:
           python-version: ${{ matrix.python-version }}
       - run: |
           echo pip_user_site=$(python -c "import sysconfig; print(sysconfig.get_path('purelib'))") >> $GITHUB_ENV
-          echo toml_ci_md5=$(cat pyproject.toml setup.py examples/pyproject.toml examples/setup.py tests/devops_tests/requirements.txt .github/workflows/tests+artifacts+pypi.yml \
+          echo toml_ci_md5=$(cat pyproject.toml setup.py examples/pyproject.toml examples/setup.py tests/devops_tests/requirements.txt .github/workflows/tests.yml \
           | python -c "import hashlib;print(hashlib.md5(open(0,'rb').read()).hexdigest())") >> $GITHUB_ENV
       - run: |
           rm -rf $pip_user_site

{pysdm-2.89 → pysdm-2.90}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PySDM
-Version: 2.89
+Version: 2.90
 Summary: Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
 Home-page: https://github.com/open-atmos/PySDM
 Author: https://github.com/open-atmos/PySDM/graphs/contributors
@@ -38,7 +38,7 @@ Requires-Dist: pyrcel; extra == "tests"
 Requires-Dist: jupyter-core<5.0.0; extra == "tests"
 Requires-Dist: ipywidgets!=8.0.3; extra == "tests"
 
-# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.png" width=100 height=146 alt="pysdm logo">
+# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.png" width=100 height=146 alt="pysdm logo">
 
 [![Python 3](https://img.shields.io/static/v1?label=Python&logo=Python&color=3776AB&message=3)](https://www.python.org/)
 [![LLVM](https://img.shields.io/static/v1?label=LLVM&logo=LLVM&color=gold&message=Numba)](https://numba.pydata.org)
@@ -75,6 +75,8 @@ The package features a Pythonic high-performance implementation of the
   Super-Droplet Method (SDM) Monte-Carlo algorithm for representing collisional growth 
   ([Shima et al. 2009](https://rmets.onlinelibrary.wiley.com/doi/abs/10.1002/qj.441)), hence the name. 
 
+PySDM documentation is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
+
 There is a growing set of [example Jupyter notebooks](https://open-atmos.github.io/PySDM/PySDM_examples.html) exemplifying how to perform 
   various types of calculations and simulations using PySDM.
 Most of the example notebooks reproduce results and plot from literature, see below for 
@@ -105,14 +107,6 @@ For an overview of PySDM features (and the preferred way to cite PySDM in papers
 PySDM includes an extension of the SDM scheme to represent collisional breakup described in [de Jong, Mackay et al. 2023](10.5194/gmd-16-4193-2023).   
 For a list of talks and other materials on PySDM as well as a list of published papers featuring PySDM simulations, see the [project wiki](https://github.com/open-atmos/PySDM/wiki).
 
-A [pdoc-generated](https://pdoc.dev/) documentation of PySDM public API is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
-
-## Example Jupyter notebooks (reproducing results from literature):
-
-See [PySDM-examples README](https://github.com/open-atmos/PySDM/blob/main/examples/README.md).
-
-![animation](https://github.com/open-atmos/PySDM/wiki/files/kinematic_2D_example.gif)
-
 ## Dependencies and Installation
 
 PySDM dependencies are: [Numpy](https://numpy.org/), [Numba](http://numba.pydata.org/), [SciPy](https://scipy.org/), 

{pysdm-2.89 → pysdm-2.90}/PySDM.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PySDM
-Version: 2.89
+Version: 2.90
 Summary: Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab
 Home-page: https://github.com/open-atmos/PySDM
 Author: https://github.com/open-atmos/PySDM/graphs/contributors
@@ -38,7 +38,7 @@ Requires-Dist: pyrcel; extra == "tests"
 Requires-Dist: jupyter-core<5.0.0; extra == "tests"
 Requires-Dist: ipywidgets!=8.0.3; extra == "tests"
 
-# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.png" width=100 height=146 alt="pysdm logo">
+# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.png" width=100 height=146 alt="pysdm logo">
 
 [![Python 3](https://img.shields.io/static/v1?label=Python&logo=Python&color=3776AB&message=3)](https://www.python.org/)
 [![LLVM](https://img.shields.io/static/v1?label=LLVM&logo=LLVM&color=gold&message=Numba)](https://numba.pydata.org)
@@ -75,6 +75,8 @@ The package features a Pythonic high-performance implementation of the
   Super-Droplet Method (SDM) Monte-Carlo algorithm for representing collisional growth 
   ([Shima et al. 2009](https://rmets.onlinelibrary.wiley.com/doi/abs/10.1002/qj.441)), hence the name. 
 
+PySDM documentation is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
+
 There is a growing set of [example Jupyter notebooks](https://open-atmos.github.io/PySDM/PySDM_examples.html) exemplifying how to perform 
   various types of calculations and simulations using PySDM.
 Most of the example notebooks reproduce results and plot from literature, see below for 
@@ -105,14 +107,6 @@ For an overview of PySDM features (and the preferred way to cite PySDM in papers
 PySDM includes an extension of the SDM scheme to represent collisional breakup described in [de Jong, Mackay et al. 2023](10.5194/gmd-16-4193-2023).   
 For a list of talks and other materials on PySDM as well as a list of published papers featuring PySDM simulations, see the [project wiki](https://github.com/open-atmos/PySDM/wiki).
 
-A [pdoc-generated](https://pdoc.dev/) documentation of PySDM public API is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
-
-## Example Jupyter notebooks (reproducing results from literature):
-
-See [PySDM-examples README](https://github.com/open-atmos/PySDM/blob/main/examples/README.md).
-
-![animation](https://github.com/open-atmos/PySDM/wiki/files/kinematic_2D_example.gif)
-
 ## Dependencies and Installation
 
 PySDM dependencies are: [Numpy](https://numpy.org/), [Numba](http://numba.pydata.org/), [SciPy](https://scipy.org/), 

{pysdm-2.89 → pysdm-2.90}/PySDM.egg-info/SOURCES.txt

@@ -12,12 +12,11 @@ setup.py
 .binder/postBuild
 .binder/requirements.txt
 .github/dependabot.yml
-.github/pysdm_logo.png
-.github/pysdm_logo.svg
 .github/workflows/cancel.yml
 .github/workflows/joss.yml
 .github/workflows/joss_paper.yml
 .github/workflows/pdoc.yml
+.github/workflows/projects.yml
 .github/workflows/pypi.yml
 .github/workflows/readme_snippets.yml
 .github/workflows/stale.yml
@@ -413,6 +412,8 @@ PySDM/products/size_spectral/size_standard_deviation.py
 PySDM/products/size_spectral/total_particle_concentration.py
 PySDM/products/size_spectral/total_particle_specific_concentration.py
 PySDM/products/size_spectral/water_mixing_ratio.py
+docs/logos/pysdm_logo.png
+docs/logos/pysdm_logo.svg
 docs/markdown/pysdm_landing.md
 docs/templates/README.md
 docs/templates/custom.css

{pysdm-2.89 → pysdm-2.90}/README.md

@@ -1,4 +1,4 @@
-# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.svg" width=100 height=146 alt="pysdm logo">
+# <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.svg" width=100 height=146 alt="pysdm logo">
 
 [![Python 3](https://img.shields.io/static/v1?label=Python&logo=Python&color=3776AB&message=3)](https://www.python.org/)
 [![LLVM](https://img.shields.io/static/v1?label=LLVM&logo=LLVM&color=gold&message=Numba)](https://numba.pydata.org)
@@ -35,6 +35,8 @@ The package features a Pythonic high-performance implementation of the
   Super-Droplet Method (SDM) Monte-Carlo algorithm for representing collisional growth 
   ([Shima et al. 2009](https://rmets.onlinelibrary.wiley.com/doi/abs/10.1002/qj.441)), hence the name. 
 
+PySDM documentation is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
+
 There is a growing set of [example Jupyter notebooks](https://open-atmos.github.io/PySDM/PySDM_examples.html) exemplifying how to perform 
   various types of calculations and simulations using PySDM.
 Most of the example notebooks reproduce results and plot from literature, see below for 
@@ -65,14 +67,6 @@ For an overview of PySDM features (and the preferred way to cite PySDM in papers
 PySDM includes an extension of the SDM scheme to represent collisional breakup described in [de Jong, Mackay et al. 2023](10.5194/gmd-16-4193-2023).   
 For a list of talks and other materials on PySDM as well as a list of published papers featuring PySDM simulations, see the [project wiki](https://github.com/open-atmos/PySDM/wiki).
 
-A [pdoc-generated](https://pdoc.dev/) documentation of PySDM public API is maintained at: [https://open-atmos.github.io/PySDM](https://open-atmos.github.io/PySDM) 
-
-## Example Jupyter notebooks (reproducing results from literature):
-
-See [PySDM-examples README](https://github.com/open-atmos/PySDM/blob/main/examples/README.md).
-
-![animation](https://github.com/open-atmos/PySDM/wiki/files/kinematic_2D_example.gif)
-
 ## Dependencies and Installation
 
 PySDM dependencies are: [Numpy](https://numpy.org/), [Numba](http://numba.pydata.org/), [SciPy](https://scipy.org/), 

{pysdm-2.89/.github → pysdm-2.90/docs/logos}/pysdm_logo.svg

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{pysdm-2.89 → pysdm-2.90}/docs/markdown/pysdm_landing.md

@@ -1,6 +1,6 @@
 # Introduction
 
-<img align="left" src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.svg" width=150 height=219 alt="pysdm logo" style="padding-right:1em">
+<img align="left" src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.svg" width=150 height=219 alt="pysdm logo" style="padding-right:1em">
 
 PySDM offers a set of building blocks for development of atmospheric cloud
 simulation systems revolving around the particle-based microphysics modelling concept

{pysdm-2.89 → pysdm-2.90}/docs/templates/index.html.jinja2

@@ -24,25 +24,32 @@
     <main class="pdoc">
         <div style="display: flex; align-items: center;">
             <a href="https://open-atmos.github.io/PySDM/index.html">
-                <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.svg" style="height:10em" alt="PySDM logo">
+                <img src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.svg" style="height:10em" alt="PySDM logo">
             </a>
             <h1 style="padding-left: 0.5em; color: #13A4DE; font-weight: normal ">Documentation</h1>
     </div>
     <div style="padding-top: 2em">
         <h2>What is PySDM?</h2>
         <p>
-            PySDM is a package for simulating the dynamics of population of particles.
-            It is intended to serve as a building block for simulation systems modelling fluid flows involving a dispersed phase, with PySDM being responsible for representation of the dispersed phase.
-            Currently, the development is focused on atmospheric cloud physics applications, in particular on modelling the dynamics of particles immersed in moist air using the particle-based (a.k.a. super-droplet) approach to represent aerosol/cloud/rain microphysics.
-            The package features a Pythonic high-performance implementation of the Super-Droplet Method (SDM) Monte-Carlo algorithm for representing collisional growth 
-            (<a href="https://doi.org/10.1002/qj.441">Shima et al. 2009</a>), hence the name.
+            <video controls style="float:right; width:40%">
+                <source src="https://github.com/open-atmos/PySDM/wiki/files/animation_save.mp4" type="video/mp4">
+                Your browser does not support the video tag.
+            </video>
+            PySDM is a package for simulating the <mark>dynamics of population of particles undergoing diffusional and collisional growth (and breakage)</mark>.
+            The package features a Pythonic high-performance (multi-threaded CPU &amp; CUDA GPU) implementation of the <mark>Super-Droplet Method (SDM) Monte-Carlo algorithm</mark> 
+              for representing collisional growth (<a href="https://doi.org/10.1002/qj.441">Shima et al. 2009</a>), hence the name.
+            It is intended to serve as a building block for simulation systems modelling <mark>fluid flows involving a dispersed phase</mark>,
+               with PySDM being responsible for representation of the dispersed phase.
+            Currently, the development is focused on atmospheric <mark>cloud physics applications</mark>, in particular on modelling the dynamics of 
+              particles immersed in moist air using the particle-based (a.k.a. super-droplet) approach to represent aerosol/cloud/rain microphysics.
+            The key goal of PySDM is to enable rapid development and independent reproducibility of simulations in cloud microphysics
+              while being free from the two-language barrier commonly separating prototype and high-performance research code.
         </p>
     </div>
     <div style="padding-top: 0.5em">
         <h2>What is the difference between PySDM and PySDM-examples?</h2>
         <p>
-            PySDM is a Python package that provides the implementation of the Super-Droplet Method (SDM) Monte-Carlo algorithm.
-            It is a library that can be used in your own projects.
+            PySDM is a Python package that provides the implementation of SDM that can be used in your own projects.
         </p>
         <p>
             PySDM-examples is a Python package that provides examples of how to use PySDM.
@@ -159,7 +166,7 @@ jupyter-notebook PySDM/examples</code></pre>
         </p>
         <p>
           Development of PySDM was supported by:
-          <ul>
+          <ul style="list-style:square; margin-left:1em;">
             <li><a href="https://www.fnp.org.pl/en/">Foundation for Polish Science</a> (grant no. POIR.04.04.00-00-5E1C/18 co-financed by the European Union under the European Regional Development Fund)</li>
             <li><a href="https://ncn.gov.pl/en">Polish National Science Centre</a> (grant no. 2020/39/D/ST10/01220)</li>
             <li><a href="https://science.energy.gov">US Department of Energy</a> via the <a href="https://www.krellinst.org/csgf/">Computational Science Graduate Fellowship</a> and via the <a href="https://asr.science.energy.gov/">Atmospheric System Research Program</a> (grant no. DE-SC0021034)</li>

{pysdm-2.89 → pysdm-2.90}/examples/docs/pysdm_examples_landing.md

@@ -1,6 +1,6 @@
 # Introduction
 
-<img align="left" src="https://raw.githubusercontent.com/open-atmos/PySDM/main/.github/pysdm_logo.svg" width=150 height=219 alt="pysdm logo" style="padding-right:1em">
+<img align="left" src="https://raw.githubusercontent.com/open-atmos/PySDM/main/docs/logos/pysdm_logo.svg" width=150 height=219 alt="pysdm logo" style="padding-right:1em">
 
 PySDM examples are engineered as Jupyter Python notebooks supported by auxiliary Python commons
   that constitute a separate <mark>PySDM-examples</mark> Python package which is also

pysdm-2.90/examples/pyproject.toml

@@ -0,0 +1,5 @@
+[tool.setuptools_scm]
+root = ".."
+
+[build-system]
+requires = ['setuptools==75.6.0', 'setuptools-scm==8.1.0']

pysdm-2.89/examples/pyproject.toml

@@ -1,5 +0,0 @@
-[tool.setuptools_scm]
-root = ".."
-
-[build-system]
-requires = ['setuptools==75.3.0', 'setuptools-scm==8.1.0']