PySDKit 0.4.54__tar.gz → 0.4.56__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (261) hide show
  1. {pysdkit-0.4.54 → pysdkit-0.4.56}/PKG-INFO +7 -2
  2. {pysdkit-0.4.54 → pysdkit-0.4.56}/PySDKit.egg-info/PKG-INFO +7 -2
  3. {pysdkit-0.4.54 → pysdkit-0.4.56}/PySDKit.egg-info/SOURCES.txt +54 -30
  4. {pysdkit-0.4.54 → pysdkit-0.4.56}/README.md +6 -1
  5. {pysdkit-0.4.54 → pysdkit-0.4.56}/pyproject.toml +1 -1
  6. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/__init__.py +11 -10
  7. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tfa/__init__.py +24 -0
  8. pysdkit-0.4.56/pysdkit/_tfa/set.py +482 -0
  9. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/base.py +1 -0
  10. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/__init__.py +18 -0
  11. pysdkit-0.4.56/pysdkit/data/_assets.py +40 -0
  12. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_image.py +5 -0
  13. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_loaders.py +187 -3
  14. pysdkit-0.4.56/pysdkit/data/real_world/bmemd_source02.npy +0 -0
  15. pysdkit-0.4.56/pysdkit/data/real_world/bmemd_source09.npy +0 -0
  16. pysdkit-0.4.56/pysdkit/data/real_world/bss_beam.npy +0 -0
  17. pysdkit-0.4.56/pysdkit/data/real_world/bss_yk9.npy +0 -0
  18. pysdkit-0.4.56/pysdkit/data/real_world/deconv_sig1.npy +0 -0
  19. pysdkit-0.4.56/pysdkit/data/real_world/deconv_sig2.npy +0 -0
  20. pysdkit-0.4.56/pysdkit/data/real_world/deconv_sig3.npy +0 -0
  21. pysdkit-0.4.56/pysdkit/data/real_world/set_batdata2.npy +0 -0
  22. pysdkit-0.4.56/pysdkit/data/real_world/set_vibdata.npy +0 -0
  23. pysdkit-0.4.56/pysdkit/entropy/__init__.py +30 -0
  24. pysdkit-0.4.56/pysdkit/entropy/_approximate_entropy.py +60 -0
  25. pysdkit-0.4.56/pysdkit/entropy/_coarse_grain.py +53 -0
  26. pysdkit-0.4.56/pysdkit/entropy/_dispersion_entropy.py +89 -0
  27. pysdkit-0.4.56/pysdkit/entropy/_distribution_entropy.py +76 -0
  28. pysdkit-0.4.56/pysdkit/entropy/_fuzzy_entropy.py +98 -0
  29. pysdkit-0.4.56/pysdkit/entropy/_increment_entropy.py +59 -0
  30. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/entropy/_permutation_entropy.py +10 -11
  31. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/entropy/_sample_entropy.py +100 -1
  32. pysdkit-0.4.56/pysdkit/entropy/_slope_entropy.py +65 -0
  33. pysdkit-0.4.56/pysdkit/entropy/_spectral_entropy.py +56 -0
  34. pysdkit-0.4.56/pysdkit/entropy/_symbolic_dynamic_entropy.py +76 -0
  35. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/_fourier_spectra.py +1 -0
  36. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/_functions.py +3 -0
  37. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/_plot_imfs.py +3 -0
  38. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/__init__.py +0 -1
  39. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/test_bmemd.py +25 -0
  40. pysdkit-0.4.56/pysdkit/tests/test_bss.py +381 -0
  41. pysdkit-0.4.56/pysdkit/tests/test_deconvolution.py +408 -0
  42. pysdkit-0.4.56/pysdkit/tests/test_entropy.py +223 -0
  43. pysdkit-0.4.56/pysdkit/tests/test_set.py +211 -0
  44. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/utils/__init__.py +75 -0
  45. pysdkit-0.4.56/pysdkit/utils/bss/__init__.py +58 -0
  46. pysdkit-0.4.56/pysdkit/utils/bss/_bss.py +350 -0
  47. pysdkit-0.4.56/pysdkit/utils/bss/_modal.py +160 -0
  48. pysdkit-0.4.56/pysdkit/utils/bss/_stft.py +238 -0
  49. pysdkit-0.4.56/pysdkit/utils/deconvolution/__init__.py +61 -0
  50. pysdkit-0.4.56/pysdkit/utils/deconvolution/_acycbd.py +184 -0
  51. pysdkit-0.4.56/pysdkit/utils/deconvolution/_common.py +232 -0
  52. pysdkit-0.4.56/pysdkit/utils/deconvolution/_imckd.py +224 -0
  53. pysdkit-0.4.56/pysdkit/utils/deconvolution/_plot.py +254 -0
  54. pysdkit-0.4.56/pysdkit/utils/deconvolution/_smhd.py +226 -0
  55. pysdkit-0.4.54/pysdkit/data/_assets.py +0 -23
  56. pysdkit-0.4.54/pysdkit/entropy/__init__.py +0 -20
  57. pysdkit-0.4.54/pysdkit/entropy/_approxiamte_entropy.py +0 -6
  58. pysdkit-0.4.54/pysdkit/models/__init__.py +0 -8
  59. pysdkit-0.4.54/pysdkit/models/_base.py +0 -114
  60. pysdkit-0.4.54/pysdkit/models/_kmeans.py +0 -4
  61. pysdkit-0.4.54/pysdkit/models/_knn.py +0 -199
  62. pysdkit-0.4.54/pysdkit/models/_pca.py +0 -229
  63. pysdkit-0.4.54/pysdkit/tests/models/__init__.py +0 -4
  64. pysdkit-0.4.54/pysdkit/tests/models/test_knn.py +0 -189
  65. pysdkit-0.4.54/pysdkit/tests/models/test_pca.py +0 -79
  66. {pysdkit-0.4.54 → pysdkit-0.4.56}/LICENSE +0 -0
  67. {pysdkit-0.4.54 → pysdkit-0.4.56}/PySDKit.egg-info/dependency_links.txt +0 -0
  68. {pysdkit-0.4.54 → pysdkit-0.4.56}/PySDKit.egg-info/requires.txt +0 -0
  69. {pysdkit-0.4.54 → pysdkit-0.4.56}/PySDKit.egg-info/top_level.txt +0 -0
  70. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_acmd/__init__.py +0 -0
  71. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_acmd/acmd.py +0 -0
  72. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_acmd/ba_acmd.py +0 -0
  73. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_acmd/dd_acmd.py +0 -0
  74. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/__init__.py +0 -0
  75. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/_find_extrema.py +0 -0
  76. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/_prepare_points.py +0 -0
  77. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/_splines.py +0 -0
  78. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/apitmemd.py +0 -0
  79. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/ceemdan.py +0 -0
  80. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/eemd.py +0 -0
  81. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/emd.py +0 -0
  82. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/esmd.py +0 -0
  83. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/hht/__init__.py +0 -0
  84. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/hht/frequency.py +0 -0
  85. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/hht/hht.py +0 -0
  86. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/memd.py +0 -0
  87. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/nstemd.py +0 -0
  88. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/online_emd.py +0 -0
  89. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/remd.py +0 -0
  90. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/semd.py +0 -0
  91. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd/tvf_emd.py +0 -0
  92. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd2d/__init__.py +0 -0
  93. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd2d/bmemd.py +0 -0
  94. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_emd2d/emd2d.py +0 -0
  95. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_ewt/__init__.py +0 -0
  96. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_ewt/efd.py +0 -0
  97. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_ewt/ewt.py +0 -0
  98. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_ewt/ewt2d.py +0 -0
  99. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/__init__.py +0 -0
  100. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/extrema.py +0 -0
  101. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/faemd.py +0 -0
  102. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/faemd2d.py +0 -0
  103. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/faemd3d.py +0 -0
  104. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_faemd/filter.py +0 -0
  105. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_gdmd/__init__.py +0 -0
  106. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_gdmd/agncmd.py +0 -0
  107. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_gdmd/gdmd.py +0 -0
  108. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_gdmd/ivgnmd.py +0 -0
  109. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_gdmd/vgnmd.py +0 -0
  110. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_imd/__init__.py +0 -0
  111. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_imd/apmd.py +0 -0
  112. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_imd/imd.py +0 -0
  113. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_jmd/__init__.py +0 -0
  114. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_jmd/jmd.py +0 -0
  115. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_jmd/mjmd.py +0 -0
  116. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_jmd/sjmd.py +0 -0
  117. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_lmd/__init__.py +0 -0
  118. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_lmd/lmd.py +0 -0
  119. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_lmd/rlmd.py +0 -0
  120. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_osd/__init__.py +0 -0
  121. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_osd/components.py +0 -0
  122. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_osd/osd.py +0 -0
  123. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_osd/swd.py +0 -0
  124. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tfa/sst.py +0 -0
  125. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tfa/vtfmtd.py +0 -0
  126. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/__init__.py +0 -0
  127. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/alif.py +0 -0
  128. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/fmd.py +0 -0
  129. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/hvd.py +0 -0
  130. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/itd.py +0 -0
  131. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/iterative_filtering.py +0 -0
  132. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_tid/ssa.py +0 -0
  133. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/__init__.py +0 -0
  134. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/mvmd.py +0 -0
  135. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/na_mvmd.py +0 -0
  136. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/namvmd.py +0 -0
  137. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/ovmd.py +0 -0
  138. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/stvmd.py +0 -0
  139. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/svmd.py +0 -0
  140. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/vmd_c.py +0 -0
  141. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/vmd_f.py +0 -0
  142. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd/vme.py +0 -0
  143. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd2d/__init__.py +0 -0
  144. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd2d/cvmd2d.py +0 -0
  145. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vmd2d/vmd2d.py +0 -0
  146. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vncmd/__init__.py +0 -0
  147. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vncmd/avncmd.py +0 -0
  148. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vncmd/incmd.py +0 -0
  149. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vncmd/stnbmd.py +0 -0
  150. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/_vncmd/vncmd.py +0 -0
  151. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_add_noise.py +0 -0
  152. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_cube.py +0 -0
  153. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_generator.py +0 -0
  154. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_models.py +0 -0
  155. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_test_univariate.py +0 -0
  156. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/_time_series.py +0 -0
  157. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/apitmemd_section_2b.npy +0 -0
  158. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/apitmemd_section_3a.npy +0 -0
  159. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/apitmemd_section_3b.npy +0 -0
  160. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/dual_signal_noise.npy +0 -0
  161. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/ecg_055m.npy +0 -0
  162. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/fast_kurtogram_x.npy +0 -0
  163. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/fmd_demo.npy +0 -0
  164. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/gearbox_fault_snippet.npy +0 -0
  165. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/input_sig.npy +0 -0
  166. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/map2.npy +0 -0
  167. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/memd_syn_12channel.npy +0 -0
  168. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/memd_syn_16channel.npy +0 -0
  169. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/memd_syn_hex.npy +0 -0
  170. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/memd_taichi_hex.npy +0 -0
  171. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/oemd_ecg.npy +0 -0
  172. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/prefixed_double_filter.npy +0 -0
  173. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/single_nsignal.npy +0 -0
  174. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/sst_doppler.npy +0 -0
  175. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/sst_float.npy +0 -0
  176. {pysdkit-0.4.54/pysdkit/data → pysdkit-0.4.56/pysdkit/data/real_world}/vmd_example.npy +0 -0
  177. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/data/texture.txt +0 -0
  178. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/__init__.py +0 -0
  179. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/_plot_images.py +0 -0
  180. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/plot/_plot_signal.py +0 -0
  181. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/data/__init__.py +0 -0
  182. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/data/test_generator_cube.py +0 -0
  183. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/data/test_generator_image.py +0 -0
  184. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/data/test_generator_signal.py +0 -0
  185. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/data/test_generator_univariate_signal.py +0 -0
  186. {pysdkit-0.4.54 → pysdkit-0.4.56}/pysdkit/tests/run_all.py +0 -0
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  Summary: A Python library for signal decomposition algorithms with a unified interface.
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  [![PyPI version](https://badge.fury.io/py/PySDKit.svg)](https://pypi.org/project/PySDKit/)
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  | [`STNBMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_vncmd/stnbmd.py) (Short-Time Narrow-Band Mode Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0022460X16002443?via%3Dihub) | [[code]](https://ww2.mathworks.cn/matlabcentral/fileexchange/56226-short-time-narrow-band-mode-decomposition-stnbmd-toolbox) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/vncmd/stnbmd.ipynb) |
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  | [`VTFMTD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/vtfmtd.py) (Variational TF Mode Tracking Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168426001179) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/183389-variational-time-frequency-mode-tracking-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/vtfmtd.ipynb) |
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  | [`SST`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/sst.py) (Synchrosqueezing Transform) | [[paper]](https://doi.org/10.1016/j.sigpro.2014.08.010) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/sst.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/sst.ipynb) |
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+ | [`SET`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/set.py) (Synchroextracting Transform) | [[paper]](https://doi.org/10.1109/TIE.2017.2696503) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/62483-synchroextracting-transform?s_tid=srchtitle) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/set.ipynb) |
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  | [`OSD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_osd/osd.py) (Optimization-based Signal Decomposition) | [[paper]](https://web.stanford.edu/~boyd/papers/sig_decomp_mprox.html) | [[code]](https://github.com/cvxgrp/signal-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/osd/osd_intro.ipynb) |
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+ [CONTRIBUTING.md](CONTRIBUTING.md) for how to add an algorithm, tests, and
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+ gallery examples (the same guide is in the
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+ [documentation](https://pysdkit.readthedocs.io/en/stable/development/index.html)).
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  Summary: A Python library for signal decomposition algorithms with a unified interface.
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@@ -56,6 +56,7 @@ Dynamic: license-file
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+ [![Documentation Status](https://readthedocs.org/projects/pysdkit/badge/?version=latest)](https://pysdkit.readthedocs.io/en/latest/)
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@@ -200,6 +201,7 @@ plot_IMFs(signal, IMFs) # per-channel panels
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  | [`STNBMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_vncmd/stnbmd.py) (Short-Time Narrow-Band Mode Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0022460X16002443?via%3Dihub) | [[code]](https://ww2.mathworks.cn/matlabcentral/fileexchange/56226-short-time-narrow-band-mode-decomposition-stnbmd-toolbox) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/vncmd/stnbmd.ipynb) |
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  | [`VTFMTD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/vtfmtd.py) (Variational TF Mode Tracking Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168426001179) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/183389-variational-time-frequency-mode-tracking-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/vtfmtd.ipynb) |
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  | [`SST`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/sst.py) (Synchrosqueezing Transform) | [[paper]](https://doi.org/10.1016/j.sigpro.2014.08.010) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/sst.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/sst.ipynb) |
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+ | [`SET`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/set.py) (Synchroextracting Transform) | [[paper]](https://doi.org/10.1109/TIE.2017.2696503) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/62483-synchroextracting-transform?s_tid=srchtitle) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/set.ipynb) |
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  | [`SWD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_osd/swd.py) (Swarm Decomposition) | [[paper]](https://doi.org/10.1016/j.sigpro.2016.09.004) | [[code]](https://github.com/gkaposto/Swarm-Decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/osd/swd.ipynb) |
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  | [`OSD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_osd/osd.py) (Optimization-based Signal Decomposition) | [[paper]](https://web.stanford.edu/~boyd/papers/sig_decomp_mprox.html) | [[code]](https://github.com/cvxgrp/signal-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/osd/osd_intro.ipynb) |
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  | [`STL`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/tsa/_stl.py) (Seasonal-Trend decomposition using LOESS) | [[paper]](https://www.nniiem.ru/file/news/2016/stl-statistical-model.pdf) | [[code]](https://www.statsmodels.org/stable/examples/notebooks/generated/stl_decomposition.html) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tsa/stl.ipynb) |
@@ -213,7 +215,10 @@ We would like to thank the researchers in signal processing for providing us wit
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- This project exists thanks to all the people who contribute.
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+ This project exists thanks to all the people who contribute. Please read
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+ [CONTRIBUTING.md](CONTRIBUTING.md) for how to add an algorithm, tests, and
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+ gallery examples (the same guide is in the
221
+ [documentation](https://pysdkit.readthedocs.io/en/stable/development/index.html)).
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+ pysdkit/data/real_world/fast_kurtogram_x.npy
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+ pysdkit/data/real_world/fmd_demo.npy
119
+ pysdkit/data/real_world/gearbox_fault_snippet.npy
120
+ pysdkit/data/real_world/input_sig.npy
121
+ pysdkit/data/real_world/map2.npy
122
+ pysdkit/data/real_world/memd_syn_12channel.npy
123
+ pysdkit/data/real_world/memd_syn_16channel.npy
124
+ pysdkit/data/real_world/memd_syn_hex.npy
125
+ pysdkit/data/real_world/memd_taichi_hex.npy
126
+ pysdkit/data/real_world/oemd_ecg.npy
127
+ pysdkit/data/real_world/prefixed_double_filter.npy
128
+ pysdkit/data/real_world/set_batdata2.npy
129
+ pysdkit/data/real_world/set_vibdata.npy
130
+ pysdkit/data/real_world/single_nsignal.npy
131
+ pysdkit/data/real_world/sst_doppler.npy
132
+ pysdkit/data/real_world/sst_float.npy
133
+ pysdkit/data/real_world/vmd_example.npy
124
134
  pysdkit/entropy/__init__.py
125
- pysdkit/entropy/_approxiamte_entropy.py
135
+ pysdkit/entropy/_approximate_entropy.py
136
+ pysdkit/entropy/_coarse_grain.py
137
+ pysdkit/entropy/_dispersion_entropy.py
138
+ pysdkit/entropy/_distribution_entropy.py
139
+ pysdkit/entropy/_fuzzy_entropy.py
140
+ pysdkit/entropy/_increment_entropy.py
126
141
  pysdkit/entropy/_permutation_entropy.py
127
142
  pysdkit/entropy/_sample_entropy.py
128
- pysdkit/models/__init__.py
129
- pysdkit/models/_base.py
130
- pysdkit/models/_kmeans.py
131
- pysdkit/models/_knn.py
132
- pysdkit/models/_pca.py
143
+ pysdkit/entropy/_slope_entropy.py
144
+ pysdkit/entropy/_spectral_entropy.py
145
+ pysdkit/entropy/_symbolic_dynamic_entropy.py
133
146
  pysdkit/plot/__init__.py
134
147
  pysdkit/plot/_fourier_spectra.py
135
148
  pysdkit/plot/_functions.py
@@ -146,13 +159,16 @@ pysdkit/tests/test_apmd.py
146
159
  pysdkit/tests/test_avncmd.py
147
160
  pysdkit/tests/test_baacmd.py
148
161
  pysdkit/tests/test_bmemd.py
162
+ pysdkit/tests/test_bss.py
149
163
  pysdkit/tests/test_ceemdan.py
150
164
  pysdkit/tests/test_cvmd2d.py
151
165
  pysdkit/tests/test_ddacmd.py
166
+ pysdkit/tests/test_deconvolution.py
152
167
  pysdkit/tests/test_eemd.py
153
168
  pysdkit/tests/test_efd.py
154
169
  pysdkit/tests/test_emd.py
155
170
  pysdkit/tests/test_emd2d.py
171
+ pysdkit/tests/test_entropy.py
156
172
  pysdkit/tests/test_esmd.py
157
173
  pysdkit/tests/test_ewt.py
158
174
  pysdkit/tests/test_ewt2d.py
@@ -180,6 +196,7 @@ pysdkit/tests/test_ovmd.py
180
196
  pysdkit/tests/test_remd.py
181
197
  pysdkit/tests/test_rlmd.py
182
198
  pysdkit/tests/test_semd.py
199
+ pysdkit/tests/test_set.py
183
200
  pysdkit/tests/test_sjmd.py
184
201
  pysdkit/tests/test_ssa.py
185
202
  pysdkit/tests/test_sst.py
@@ -200,9 +217,6 @@ pysdkit/tests/data/test_generator_cube.py
200
217
  pysdkit/tests/data/test_generator_image.py
201
218
  pysdkit/tests/data/test_generator_signal.py
202
219
  pysdkit/tests/data/test_generator_univariate_signal.py
203
- pysdkit/tests/models/__init__.py
204
- pysdkit/tests/models/test_knn.py
205
- pysdkit/tests/models/test_pca.py
206
220
  pysdkit/tsa/__init__.py
207
221
  pysdkit/tsa/_dtw.py
208
222
  pysdkit/tsa/_moving_decomp.py
@@ -221,4 +235,14 @@ pysdkit/utils/_kurtogram.py
221
235
  pysdkit/utils/_mirror.py
222
236
  pysdkit/utils/_pca.py
223
237
  pysdkit/utils/_process.py
224
- pysdkit/utils/_smooth1d.py
238
+ pysdkit/utils/_smooth1d.py
239
+ pysdkit/utils/bss/__init__.py
240
+ pysdkit/utils/bss/_bss.py
241
+ pysdkit/utils/bss/_modal.py
242
+ pysdkit/utils/bss/_stft.py
243
+ pysdkit/utils/deconvolution/__init__.py
244
+ pysdkit/utils/deconvolution/_acycbd.py
245
+ pysdkit/utils/deconvolution/_common.py
246
+ pysdkit/utils/deconvolution/_imckd.py
247
+ pysdkit/utils/deconvolution/_plot.py
248
+ pysdkit/utils/deconvolution/_smhd.py
@@ -3,6 +3,7 @@
3
3
  # PySDKit: signal decomposition in Python
4
4
 
5
5
  [![PyPI version](https://badge.fury.io/py/PySDKit.svg)](https://pypi.org/project/PySDKit/)
6
+ [![Documentation Status](https://readthedocs.org/projects/pysdkit/badge/?version=latest)](https://pysdkit.readthedocs.io/en/latest/)
6
7
  ![License](https://img.shields.io/github/license/wwhenxuan/PySDKit)
7
8
  [![Python](https://img.shields.io/badge/python-3.8+-blue?logo=python)](https://www.python.org/)
8
9
  [![Downloads](https://pepy.tech/badge/pysdkit)](https://pepy.tech/project/pysdkit)
@@ -147,6 +148,7 @@ plot_IMFs(signal, IMFs) # per-channel panels
147
148
  | [`STNBMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_vncmd/stnbmd.py) (Short-Time Narrow-Band Mode Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0022460X16002443?via%3Dihub) | [[code]](https://ww2.mathworks.cn/matlabcentral/fileexchange/56226-short-time-narrow-band-mode-decomposition-stnbmd-toolbox) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/vncmd/stnbmd.ipynb) |
148
149
  | [`VTFMTD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/vtfmtd.py) (Variational TF Mode Tracking Decomposition) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168426001179) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/183389-variational-time-frequency-mode-tracking-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/vtfmtd.ipynb) |
149
150
  | [`SST`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/sst.py) (Synchrosqueezing Transform) | [[paper]](https://doi.org/10.1016/j.sigpro.2014.08.010) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/sst.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/sst.ipynb) |
151
+ | [`SET`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_tfa/set.py) (Synchroextracting Transform) | [[paper]](https://doi.org/10.1109/TIE.2017.2696503) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/62483-synchroextracting-transform?s_tid=srchtitle) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tfa/set.ipynb) |
150
152
  | [`SWD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_osd/swd.py) (Swarm Decomposition) | [[paper]](https://doi.org/10.1016/j.sigpro.2016.09.004) | [[code]](https://github.com/gkaposto/Swarm-Decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/osd/swd.ipynb) |
151
153
  | [`OSD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_osd/osd.py) (Optimization-based Signal Decomposition) | [[paper]](https://web.stanford.edu/~boyd/papers/sig_decomp_mprox.html) | [[code]](https://github.com/cvxgrp/signal-decomposition) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/osd/osd_intro.ipynb) |
152
154
  | [`STL`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/tsa/_stl.py) (Seasonal-Trend decomposition using LOESS) | [[paper]](https://www.nniiem.ru/file/news/2016/stl-statistical-model.pdf) | [[code]](https://www.statsmodels.org/stable/examples/notebooks/generated/stl_decomposition.html) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/tsa/stl.ipynb) |
@@ -160,7 +162,10 @@ We would like to thank the researchers in signal processing for providing us wit
160
162
 
161
163
  ## Contributing 🤗
162
164
 
163
- This project exists thanks to all the people who contribute.
165
+ This project exists thanks to all the people who contribute. Please read
166
+ [CONTRIBUTING.md](CONTRIBUTING.md) for how to add an algorithm, tests, and
167
+ gallery examples (the same guide is in the
168
+ [documentation](https://pysdkit.readthedocs.io/en/stable/development/index.html)).
164
169
 
165
170
  <a href="https://github.com/wwhenxuan/PySDKit/graphs/contributors">
166
171
  <img src="https://contrib.rocks/image?repo=wwhenxuan/PySDKit" />
@@ -67,4 +67,4 @@ where = ["."]
67
67
  include = ["pysdkit*"]
68
68
 
69
69
  [tool.setuptools.package-data]
70
- "pysdkit.data" = ["*.npy", "*.txt"]
70
+ "pysdkit.data" = ["*.txt", "real_world/*.npy"]
@@ -2,7 +2,7 @@
2
2
  A Python library for signal decomposition algorithms.
3
3
  """
4
4
 
5
- __version__ = "0.4.54"
5
+ __version__ = "0.4.56"
6
6
 
7
7
  # Empirical Mode Decomposition
8
8
  from ._emd import EMD
@@ -133,6 +133,9 @@ from ._tfa import VTFMTD, vtfmtd
133
133
  # Synchrosqueezing Transform
134
134
  from ._tfa import SST, sst
135
135
 
136
+ # Synchroextracting Transform
137
+ from ._tfa import SET, set
138
+
136
139
  # Adaptive Polymorphic Mode Decomposition / Impulsive Mode Decomposition
137
140
  from ._imd import APMD, IMD, imd
138
141
 
@@ -171,8 +174,7 @@ from ._emd import HHT
171
174
 
172
175
 
173
176
  def greet():
174
- print(
175
- r"""
177
+ print(r"""
176
178
  ____ ____ ____ _ __ _ _
177
179
  | _ \ _ _ / ___| | _ \ | |/ /(_)| |_
178
180
  | |_) || | | |\___ \ | | | || ' / | || __|
@@ -182,14 +184,12 @@ def greet():
182
184
 
183
185
  A Python library for signal decomposition algorithms.
184
186
  https://github.com/wwhenxuan/PySDKit
185
- """
186
- )
187
+ """)
187
188
 
188
189
 
189
190
  def print_functions():
190
191
  """"""
191
- print(
192
- """
192
+ print("""
193
193
  _______________________________________________________________
194
194
  Algorithm Name | Abbreviation
195
195
  _______________________________________________________________
@@ -235,6 +235,7 @@ Short-Time Narrow-Banded Mode Decomposition | STNBMD
235
235
  Adaptive Local Iterative Filtering | ALIF
236
236
  Variational TF Mode Tracking Decomposition | VTFMTD
237
237
  Synchrosqueezing Transform | SST
238
+ Synchroextracting Transform | SET
238
239
  Adaptive Polymorphic Mode Decomposition | APMD
239
240
  Impulsive Mode Decomposition | IMD
240
241
  Empirical Wavelet Transform | EWT
@@ -249,8 +250,7 @@ Seasonal-Trend decomposition using LOESS | STL
249
250
  Multiple Seasonal-Trend decomposition (LOESS) | MSTL
250
251
  Hilbert-Huang Transform | HHT
251
252
  _______________________________________________________________
252
- """
253
- )
253
+ """)
254
254
 
255
255
 
256
256
  __all__ = [
@@ -314,6 +314,8 @@ __all__ = [
314
314
  "vtfmtd",
315
315
  "SST",
316
316
  "sst",
317
+ "SET",
318
+ "set",
317
319
  "APMD",
318
320
  "IMD",
319
321
  "imd",
@@ -331,7 +333,6 @@ __all__ = [
331
333
  "Moving_Decomp",
332
334
  "STL",
333
335
  "MSTL",
334
- "models",
335
336
  "data",
336
337
  "entropy",
337
338
  "HHT",
@@ -35,6 +35,19 @@ from .sst import (
35
35
  sst_wavelet_linear,
36
36
  universal_threshold,
37
37
  )
38
+ from .set import (
39
+ SET,
40
+ set,
41
+ brevridge,
42
+ brevridge_mult,
43
+ frequency_axis_set,
44
+ gaussian_window,
45
+ odd_window_length,
46
+ reconstruct_from_ridges,
47
+ set_transform,
48
+ stft_gaussian_pair,
49
+ synchroextracting_operator,
50
+ )
38
51
  from pysdkit.data._loaders import (
39
52
  load_dual_signal_noise,
40
53
  load_map2,
@@ -67,6 +80,17 @@ __all__ = [
67
80
  "selective_cwt_mask",
68
81
  "sst_wavelet_linear",
69
82
  "universal_threshold",
83
+ "SET",
84
+ "set",
85
+ "brevridge",
86
+ "brevridge_mult",
87
+ "frequency_axis_set",
88
+ "gaussian_window",
89
+ "odd_window_length",
90
+ "reconstruct_from_ridges",
91
+ "set_transform",
92
+ "stft_gaussian_pair",
93
+ "synchroextracting_operator",
70
94
  "load_dual_signal_noise",
71
95
  "load_single_nsignal",
72
96
  "load_map2",