PySDKit 0.4.52__tar.gz → 0.4.53__tar.gz

{pysdkit-0.4.52 → pysdkit-0.4.53}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: PySDKit
-Version: 0.4.52
+Version: 0.4.53
 Summary: A Python library for signal decomposition algorithms with a unified interface.
 Author: Whenxuan Wang, RuiZhe Wang, Rongkun Zhu, Kai Wu, Lei Wang, josefinez, Deeksha Manjunath, Yuan Feng, WenTong Zhao, JacktheFowler
 Maintainer-email: Whenxuan Wang <wwhenxuan@gmail.com>, RuiZhe Wang <3133986068@qq.com>
@@ -156,6 +156,8 @@ plot_IMFs(signal, IMFs)             # per-channel panels
 | [`TVF_EMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/tvf_emd.py) (Time Varying Filter Based EMD) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168417301135) |   [[code]](https://github.com/stfbnc/pytvfemd/tree/master)   | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/tfv_emd.ipynb) |
 | [`MEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/memd.py) (Multivariate Empirical Mode Decomposition) | [[paper]](https://royalsocietypublishing.org/doi/full/10.1098/rspa.2009.0502) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/memd.ipynb) |
 | [`APITMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/apitmemd.py) (Adaptive-Projection Intrinsically Transformed MEMD) | [[paper]](https://www.commsp.ee.ic.ac.uk/~mandic/research/EMD_Stuff/AH_VG_DL_DPM_APITMEMD_RSTA_2016.pdf) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/apitmemd.ipynb) |
+| [`NSTEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/nstemd.py) (Nonuniformly Sampled Trivariate EMD) | [[paper]](https://ieeexplore.ieee.org/document/7178660) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/nstemd.ipynb) |
+| [`OnlineEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/online_emd.py) (Online Empirical Mode Decomposition) | [[paper]](https://ieeexplore.ieee.org/document/7952969) | [[code]](https://github.com/romain-fontugne/onlineEMD) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/online_emd.ipynb) |
 | [`EMD2D`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/emd2d.py) (Empirical Mode Decomposition 2D for images) |          [[paper]](http://aquador.vovve.net/IEMD/)           |           [[code]](http://aquador.vovve.net/IEMD/)           | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/emd2d.ipynb) |
 | [`BMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/bmemd.py) (Bidimensional Multivariate Empirical Mode Decomposition) |   [[paper]](https://ieeexplore.ieee.org/document/8805082)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/72343-bidimensional-multivariate-empirical-mode-decomposition?s_tid=FX_rc1_behav) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/bmemd.ipynb) |
 | [`FAEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_faemd/faemd.py) (Fast and Adaptive EMD) |   [[paper]](https://ieeexplore.ieee.org/document/8447300)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/faemd/faemd.ipynb) |

{pysdkit-0.4.52 → pysdkit-0.4.53}/PySDKit.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: PySDKit
-Version: 0.4.52
+Version: 0.4.53
 Summary: A Python library for signal decomposition algorithms with a unified interface.
 Author: Whenxuan Wang, RuiZhe Wang, Rongkun Zhu, Kai Wu, Lei Wang, josefinez, Deeksha Manjunath, Yuan Feng, WenTong Zhao, JacktheFowler
 Maintainer-email: Whenxuan Wang <wwhenxuan@gmail.com>, RuiZhe Wang <3133986068@qq.com>
@@ -156,6 +156,8 @@ plot_IMFs(signal, IMFs)             # per-channel panels
 | [`TVF_EMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/tvf_emd.py) (Time Varying Filter Based EMD) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168417301135) |   [[code]](https://github.com/stfbnc/pytvfemd/tree/master)   | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/tfv_emd.ipynb) |
 | [`MEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/memd.py) (Multivariate Empirical Mode Decomposition) | [[paper]](https://royalsocietypublishing.org/doi/full/10.1098/rspa.2009.0502) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/memd.ipynb) |
 | [`APITMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/apitmemd.py) (Adaptive-Projection Intrinsically Transformed MEMD) | [[paper]](https://www.commsp.ee.ic.ac.uk/~mandic/research/EMD_Stuff/AH_VG_DL_DPM_APITMEMD_RSTA_2016.pdf) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/apitmemd.ipynb) |
+| [`NSTEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/nstemd.py) (Nonuniformly Sampled Trivariate EMD) | [[paper]](https://ieeexplore.ieee.org/document/7178660) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/nstemd.ipynb) |
+| [`OnlineEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/online_emd.py) (Online Empirical Mode Decomposition) | [[paper]](https://ieeexplore.ieee.org/document/7952969) | [[code]](https://github.com/romain-fontugne/onlineEMD) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/online_emd.ipynb) |
 | [`EMD2D`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/emd2d.py) (Empirical Mode Decomposition 2D for images) |          [[paper]](http://aquador.vovve.net/IEMD/)           |           [[code]](http://aquador.vovve.net/IEMD/)           | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/emd2d.ipynb) |
 | [`BMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/bmemd.py) (Bidimensional Multivariate Empirical Mode Decomposition) |   [[paper]](https://ieeexplore.ieee.org/document/8805082)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/72343-bidimensional-multivariate-empirical-mode-decomposition?s_tid=FX_rc1_behav) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/bmemd.ipynb) |
 | [`FAEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_faemd/faemd.py) (Fast and Adaptive EMD) |   [[paper]](https://ieeexplore.ieee.org/document/8447300)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/faemd/faemd.ipynb) |

{pysdkit-0.4.52 → pysdkit-0.4.53}/PySDKit.egg-info/SOURCES.txt

@@ -21,6 +21,8 @@ pysdkit/_emd/eemd.py
 pysdkit/_emd/emd.py
 pysdkit/_emd/esmd.py
 pysdkit/_emd/memd.py
+pysdkit/_emd/nstemd.py
+pysdkit/_emd/online_emd.py
 pysdkit/_emd/remd.py
 pysdkit/_emd/semd.py
 pysdkit/_emd/tvf_emd.py
@@ -110,6 +112,7 @@ pysdkit/data/memd_syn_12channel.npy
 pysdkit/data/memd_syn_16channel.npy
 pysdkit/data/memd_syn_hex.npy
 pysdkit/data/memd_taichi_hex.npy
+pysdkit/data/oemd_ecg.npy
 pysdkit/data/prefixed_double_filter.npy
 pysdkit/data/single_nsignal.npy
 pysdkit/data/texture.txt
@@ -165,6 +168,8 @@ pysdkit/tests/test_memd.py
 pysdkit/tests/test_moving_decomp.py
 pysdkit/tests/test_mstl.py
 pysdkit/tests/test_mvmd.py
+pysdkit/tests/test_nstemd.py
+pysdkit/tests/test_onlineemd.py
 pysdkit/tests/test_osd.py
 pysdkit/tests/test_ovmd.py
 pysdkit/tests/test_remd.py
@@ -207,5 +212,6 @@ pysdkit/utils/_hilbert.py
 pysdkit/utils/_instantaneous.py
 pysdkit/utils/_kernel_matrix.py
 pysdkit/utils/_mirror.py
+pysdkit/utils/_pca.py
 pysdkit/utils/_process.py
 pysdkit/utils/_smooth1d.py

{pysdkit-0.4.52 → pysdkit-0.4.53}/README.md

@@ -103,6 +103,8 @@ plot_IMFs(signal, IMFs)             # per-channel panels
 | [`TVF_EMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/tvf_emd.py) (Time Varying Filter Based EMD) | [[paper]](https://www.sciencedirect.com/science/article/pii/S0165168417301135) |   [[code]](https://github.com/stfbnc/pytvfemd/tree/master)   | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/tfv_emd.ipynb) |
 | [`MEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/memd.py) (Multivariate Empirical Mode Decomposition) | [[paper]](https://royalsocietypublishing.org/doi/full/10.1098/rspa.2009.0502) | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/memd.ipynb) |
 | [`APITMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/apitmemd.py) (Adaptive-Projection Intrinsically Transformed MEMD) | [[paper]](https://www.commsp.ee.ic.ac.uk/~mandic/research/EMD_Stuff/AH_VG_DL_DPM_APITMEMD_RSTA_2016.pdf) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/memd/apitmemd.ipynb) |
+| [`NSTEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/nstemd.py) (Nonuniformly Sampled Trivariate EMD) | [[paper]](https://ieeexplore.ieee.org/document/7178660) | [[code]](https://www.commsp.ee.ic.ac.uk/~mandic/research/emd.htm) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/nstemd.ipynb) |
+| [`OnlineEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd/online_emd.py) (Online Empirical Mode Decomposition) | [[paper]](https://ieeexplore.ieee.org/document/7952969) | [[code]](https://github.com/romain-fontugne/onlineEMD) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/emd_variants/online_emd.ipynb) |
 | [`EMD2D`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/emd2d.py) (Empirical Mode Decomposition 2D for images) |          [[paper]](http://aquador.vovve.net/IEMD/)           |           [[code]](http://aquador.vovve.net/IEMD/)           | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/emd2d.ipynb) |
 | [`BMEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_emd2d/bmemd.py) (Bidimensional Multivariate Empirical Mode Decomposition) |   [[paper]](https://ieeexplore.ieee.org/document/8805082)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/72343-bidimensional-multivariate-empirical-mode-decomposition?s_tid=FX_rc1_behav) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/image/bmemd.ipynb) |
 | [`FAEMD`](https://github.com/wwhenxuan/PySDKit/blob/main/pysdkit/_faemd/faemd.py) (Fast and Adaptive EMD) |   [[paper]](https://ieeexplore.ieee.org/document/8447300)    | [[code]](https://www.mathworks.com/matlabcentral/fileexchange/71270-fast-and-adaptive-multivariate-and-multidimensional-emd) | [[notebook]](https://github.com/wwhenxuan/PySDKit/blob/main/examples/faemd/faemd.ipynb) |

{pysdkit-0.4.52 → pysdkit-0.4.53}/pysdkit/__init__.py

@@ -2,7 +2,7 @@
 A Python library for signal decomposition algorithms.
 """
 
-__version__ = "0.4.52"
+__version__ = "0.4.53"
 
 # Empirical Mode Decomposition
 from ._emd import EMD
@@ -22,6 +22,12 @@ from ._emd import MEMD
 # Adaptive-Projection Intrinsically Transformed MEMD
 from ._emd import APITMEMD
 
+# Nonuniformly Sampled Trivariate Empirical Mode Decomposition
+from ._emd import NSTEMD
+
+# Online Empirical Mode Decomposition
+from ._emd import OnlineEMD
+
 # Serial Empirical Mode Decomposition
 from ._emd import SEMD
 
@@ -190,6 +196,8 @@ Complete Ensemble EMD with Adaptive Noise       |    CEEMDAN
 Robust Empirical Mode Decomposition             |    REMD
 Multivariate Empirical Mode Decomposition       |    MEMD
 Adaptive-Projection Intrinsically Transformed MEMD | APITMEMD
+Nonuniformly Sampled Trivariate EMD             |    NSTEMD
+Online Empirical Mode Decomposition             |    OnlineEMD
 Serial Empirical Mode Decomposition             |    SEMD
 Time Varying Filter based EMD                   |    TVF_EMD
 Fast and Adaptive Empirical Mode Decomposition  |    FAEMD
@@ -248,6 +256,8 @@ __all__ = [
     "REMD",
     "MEMD",
     "APITMEMD",
+    "NSTEMD",
+    "OnlineEMD",
     "SEMD",
     "TVF_EMD",
     "FAEMD",

{pysdkit-0.4.52 → pysdkit-0.4.53}/pysdkit/_emd/__init__.py

@@ -21,6 +21,10 @@ from .memd import MEMD
 
 from .apitmemd import APITMEMD
 
+from .nstemd import NSTEMD
+
+from .online_emd import OnlineEMD
+
 from .tvf_emd import TVF_EMD
 
 from .hht import HHT

{pysdkit-0.4.52 → pysdkit-0.4.53}/pysdkit/_emd/apitmemd.py

@@ -12,8 +12,6 @@ Hemakom, A., Goverdovsky, V., Looney, D. and Mandic, D. P.
 "Adaptive-projection intrinsically transformed multivariate empirical mode
 decomposition in cooperative brain–computer interface applications."
 Phil. Trans. R. Soc. A 374:20150199 (2016).
-
-MATLAB: ``repo/APITMEMD/apitmemd.m``
 """
 
 from __future__ import annotations