PyQUDA-Utils 0.9.0.dev3__tar.gz

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Files changed (26) hide show
  1. pyquda_utils-0.9.0.dev3/LICENSE +21 -0
  2. pyquda_utils-0.9.0.dev3/MANIFEST.in +1 -0
  3. pyquda_utils-0.9.0.dev3/PKG-INFO +115 -0
  4. pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/PKG-INFO +115 -0
  5. pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/SOURCES.txt +24 -0
  6. pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/dependency_links.txt +1 -0
  7. pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/requires.txt +1 -0
  8. pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/top_level.txt +1 -0
  9. pyquda_utils-0.9.0.dev3/README.md +69 -0
  10. pyquda_utils-0.9.0.dev3/pyproject.toml +45 -0
  11. pyquda_utils-0.9.0.dev3/pyquda_utils/__init__.py +1 -0
  12. pyquda_utils-0.9.0.dev3/pyquda_utils/_version.py +1 -0
  13. pyquda_utils-0.9.0.dev3/pyquda_utils/core.py +387 -0
  14. pyquda_utils-0.9.0.dev3/pyquda_utils/deprecated.py +136 -0
  15. pyquda_utils-0.9.0.dev3/pyquda_utils/gamma.py +200 -0
  16. pyquda_utils-0.9.0.dev3/pyquda_utils/hmc_param.py +572 -0
  17. pyquda_utils-0.9.0.dev3/pyquda_utils/io/__init__.py +250 -0
  18. pyquda_utils-0.9.0.dev3/pyquda_utils/io/chroma.py +157 -0
  19. pyquda_utils-0.9.0.dev3/pyquda_utils/io/kyu.py +66 -0
  20. pyquda_utils-0.9.0.dev3/pyquda_utils/io/milc.py +163 -0
  21. pyquda_utils-0.9.0.dev3/pyquda_utils/io/npy.py +67 -0
  22. pyquda_utils-0.9.0.dev3/pyquda_utils/io/xqcd.py +57 -0
  23. pyquda_utils-0.9.0.dev3/pyquda_utils/phase.py +165 -0
  24. pyquda_utils-0.9.0.dev3/pyquda_utils/source.py +447 -0
  25. pyquda_utils-0.9.0.dev3/setup.cfg +4 -0
  26. pyquda_utils-0.9.0.dev3/setup.py +12 -0
pyquda_utils-0.9.0.dev3/LICENSE ADDED
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2022-2024 PyQUDA Developers
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+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
pyquda_utils-0.9.0.dev3/MANIFEST.in ADDED
@@ -0,0 +1 @@
1
+ exclude tests/*
pyquda_utils-0.9.0.dev3/PKG-INFO ADDED
@@ -0,0 +1,115 @@
1
+ Metadata-Version: 2.1
2
+ Name: PyQUDA-Utils
3
+ Version: 0.9.0.dev3
4
+ Summary: Utility scripts based on PyQUDA
5
+ Author-email: SaltyChiang <SaltyChiang@users.noreply.github.com>
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+ Maintainer-email: SaltyChiang <SaltyChiang@users.noreply.github.com>
7
+ License: MIT License
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+
9
+ Copyright (c) 2022-2024 PyQUDA Developers
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+
11
+ Permission is hereby granted, free of charge, to any person obtaining a copy
12
+ of this software and associated documentation files (the "Software"), to deal
13
+ in the Software without restriction, including without limitation the rights
14
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
15
+ copies of the Software, and to permit persons to whom the Software is
16
+ furnished to do so, subject to the following conditions:
17
+
18
+ The above copyright notice and this permission notice shall be included in all
19
+ copies or substantial portions of the Software.
20
+
21
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
22
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
23
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
24
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
25
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
26
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
27
+ SOFTWARE.
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+
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+ Project-URL: Homepage, https://github.com/CLQCD/PyQUDA
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+ Project-URL: Documentation, https://github.com/CLQCD/PyQUDA/wiki/Documentation
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+ Project-URL: Repository, https://github.com/CLQCD/PyQUDA.git
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+ Project-URL: Issues, https://github.com/CLQCD/PyQUDA/issues
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+ Keywords: lattice-gauge-theory,lattice-field-theory,lattice-qcd,hep-lat
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+ Classifier: Development Status :: 2 - Pre-Alpha
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Programming Language :: Cython
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+ Classifier: License :: OSI Approved :: MIT License
38
+ Classifier: Operating System :: POSIX :: Linux
39
+ Classifier: Environment :: GPU
40
+ Classifier: Environment :: GPU :: NVIDIA CUDA
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+ Classifier: Topic :: Scientific/Engineering :: Physics
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+ Requires-Python: >=3.8
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: PyQUDA
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+
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+ # PyQUDA
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+
49
+ Python wrapper for [QUDA](https://github.com/lattice/quda) written in Cython.
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+
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+ This project aims to benefit from the optimized linear algebra library [CuPy](https://cupy.dev/) in Python based on CUDA. CuPy and QUDA will allow us to perform most lattice QCD research operations with high performance. [PyTorch](https://pytorch.org/) is an alternative option.
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+
53
+ This project is based on the latest QUDA `develop` branch. PyQUDA should be compatible with any commit of QUDA after https://github.com/lattice/quda/pull/1489, but leave some features disabled.
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+
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+ ## Feature
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+
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+ - Multi-GPU supported
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+ - with [MPI for Python](https://mpi4py.readthedocs.io/en/stable/) package
59
+ - File I/O
60
+ - Read gauge and propagator in Chroma format
61
+ - Read gauge and propagator in MILC format
62
+ - Read/write gauge and propagator in KYU format
63
+ - Read/write gauge and propagator in XQCD format
64
+ - Read/write gauge and propagator in NPY format (numpy)
65
+ - Quark propagator
66
+ - Isotropic/anisotropic Wilson fermion action with multigrid support
67
+ - Isotropic/anisotropic Clover fermion action with multigrid support
68
+ - Isotropic HISQ fermion action
69
+ - HMC
70
+ - Isotropic Wilson gauge action
71
+ - Isotropic Symanzik gauge action
72
+ - 1-flavor isotropic clover fermion action
73
+ - 2-flavor isotropic clover fermion action
74
+ - Gauge fixing
75
+ - Rotation field with over-relaxation method (waiting for QUDA merge)
76
+ - Gauge smearing
77
+ - 3D/4D APE smearing
78
+ - 3D/4D stout smearing
79
+ - 3D/4D HYP smearing
80
+ - Fermion smearing
81
+ - Gaussian smearing
82
+ - Gradient flow
83
+ - Wilson flow
84
+ - Symanzik flow
85
+
86
+ ## Installation
87
+
88
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Installation for detailed instructions to install PyQUDA from the source.
89
+
90
+ ## Benchmark
91
+
92
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Benchmark for detailed instructions to run the PyQUDA benchmark.
93
+
94
+ ## Documentation (draft)
95
+
96
+ https://github.com/CLQCD/PyQUDA/wiki/Documentation
97
+
98
+ ## Development
99
+
100
+ We recommend building PyQUDA using in-place mode instead of installing PyQUDA for development.
101
+
102
+ ```bash
103
+ git clone https://github.com/CLQCD/PyQUDA.git
104
+ cd PyQUDA
105
+ ln -s pyquda_core/pyquda pyquda
106
+ cd pyquda_core
107
+ export QUDA_PATH=/path/to/quda/build/usqcd
108
+ python3 setup.py build_ext --inplace
109
+ ```
110
+
111
+ Now you can modify Python files in the project and immediately get the new result by running scripts. Adding the root directory to `sys.path` is needed if you are running scripts from other directories.
112
+
113
+ ## Maintenance
114
+
115
+ Function definitions (mainly in `quda.in.pxd` and `pyquda.in.pyx`) and most docstrings (mainly in `pyquda.pyi` and `enum_quda.in.py`) should be manually updated as they cannot be autogenerated now. This also means PyQUDA should work well with future versions if the API remains unchanged.
pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/PKG-INFO ADDED
@@ -0,0 +1,115 @@
1
+ Metadata-Version: 2.1
2
+ Name: PyQUDA-Utils
3
+ Version: 0.9.0.dev3
4
+ Summary: Utility scripts based on PyQUDA
5
+ Author-email: SaltyChiang <SaltyChiang@users.noreply.github.com>
6
+ Maintainer-email: SaltyChiang <SaltyChiang@users.noreply.github.com>
7
+ License: MIT License
8
+
9
+ Copyright (c) 2022-2024 PyQUDA Developers
10
+
11
+ Permission is hereby granted, free of charge, to any person obtaining a copy
12
+ of this software and associated documentation files (the "Software"), to deal
13
+ in the Software without restriction, including without limitation the rights
14
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
15
+ copies of the Software, and to permit persons to whom the Software is
16
+ furnished to do so, subject to the following conditions:
17
+
18
+ The above copyright notice and this permission notice shall be included in all
19
+ copies or substantial portions of the Software.
20
+
21
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
22
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
23
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
24
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
25
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
26
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
27
+ SOFTWARE.
28
+
29
+ Project-URL: Homepage, https://github.com/CLQCD/PyQUDA
30
+ Project-URL: Documentation, https://github.com/CLQCD/PyQUDA/wiki/Documentation
31
+ Project-URL: Repository, https://github.com/CLQCD/PyQUDA.git
32
+ Project-URL: Issues, https://github.com/CLQCD/PyQUDA/issues
33
+ Keywords: lattice-gauge-theory,lattice-field-theory,lattice-qcd,hep-lat
34
+ Classifier: Development Status :: 2 - Pre-Alpha
35
+ Classifier: Programming Language :: Python :: 3 :: Only
36
+ Classifier: Programming Language :: Cython
37
+ Classifier: License :: OSI Approved :: MIT License
38
+ Classifier: Operating System :: POSIX :: Linux
39
+ Classifier: Environment :: GPU
40
+ Classifier: Environment :: GPU :: NVIDIA CUDA
41
+ Classifier: Topic :: Scientific/Engineering :: Physics
42
+ Requires-Python: >=3.8
43
+ Description-Content-Type: text/markdown
44
+ License-File: LICENSE
45
+ Requires-Dist: PyQUDA
46
+
47
+ # PyQUDA
48
+
49
+ Python wrapper for [QUDA](https://github.com/lattice/quda) written in Cython.
50
+
51
+ This project aims to benefit from the optimized linear algebra library [CuPy](https://cupy.dev/) in Python based on CUDA. CuPy and QUDA will allow us to perform most lattice QCD research operations with high performance. [PyTorch](https://pytorch.org/) is an alternative option.
52
+
53
+ This project is based on the latest QUDA `develop` branch. PyQUDA should be compatible with any commit of QUDA after https://github.com/lattice/quda/pull/1489, but leave some features disabled.
54
+
55
+ ## Feature
56
+
57
+ - Multi-GPU supported
58
+ - with [MPI for Python](https://mpi4py.readthedocs.io/en/stable/) package
59
+ - File I/O
60
+ - Read gauge and propagator in Chroma format
61
+ - Read gauge and propagator in MILC format
62
+ - Read/write gauge and propagator in KYU format
63
+ - Read/write gauge and propagator in XQCD format
64
+ - Read/write gauge and propagator in NPY format (numpy)
65
+ - Quark propagator
66
+ - Isotropic/anisotropic Wilson fermion action with multigrid support
67
+ - Isotropic/anisotropic Clover fermion action with multigrid support
68
+ - Isotropic HISQ fermion action
69
+ - HMC
70
+ - Isotropic Wilson gauge action
71
+ - Isotropic Symanzik gauge action
72
+ - 1-flavor isotropic clover fermion action
73
+ - 2-flavor isotropic clover fermion action
74
+ - Gauge fixing
75
+ - Rotation field with over-relaxation method (waiting for QUDA merge)
76
+ - Gauge smearing
77
+ - 3D/4D APE smearing
78
+ - 3D/4D stout smearing
79
+ - 3D/4D HYP smearing
80
+ - Fermion smearing
81
+ - Gaussian smearing
82
+ - Gradient flow
83
+ - Wilson flow
84
+ - Symanzik flow
85
+
86
+ ## Installation
87
+
88
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Installation for detailed instructions to install PyQUDA from the source.
89
+
90
+ ## Benchmark
91
+
92
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Benchmark for detailed instructions to run the PyQUDA benchmark.
93
+
94
+ ## Documentation (draft)
95
+
96
+ https://github.com/CLQCD/PyQUDA/wiki/Documentation
97
+
98
+ ## Development
99
+
100
+ We recommend building PyQUDA using in-place mode instead of installing PyQUDA for development.
101
+
102
+ ```bash
103
+ git clone https://github.com/CLQCD/PyQUDA.git
104
+ cd PyQUDA
105
+ ln -s pyquda_core/pyquda pyquda
106
+ cd pyquda_core
107
+ export QUDA_PATH=/path/to/quda/build/usqcd
108
+ python3 setup.py build_ext --inplace
109
+ ```
110
+
111
+ Now you can modify Python files in the project and immediately get the new result by running scripts. Adding the root directory to `sys.path` is needed if you are running scripts from other directories.
112
+
113
+ ## Maintenance
114
+
115
+ Function definitions (mainly in `quda.in.pxd` and `pyquda.in.pyx`) and most docstrings (mainly in `pyquda.pyi` and `enum_quda.in.py`) should be manually updated as they cannot be autogenerated now. This also means PyQUDA should work well with future versions if the API remains unchanged.
pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/SOURCES.txt ADDED
@@ -0,0 +1,24 @@
1
+ LICENSE
2
+ MANIFEST.in
3
+ README.md
4
+ pyproject.toml
5
+ setup.py
6
+ PyQUDA_Utils.egg-info/PKG-INFO
7
+ PyQUDA_Utils.egg-info/SOURCES.txt
8
+ PyQUDA_Utils.egg-info/dependency_links.txt
9
+ PyQUDA_Utils.egg-info/requires.txt
10
+ PyQUDA_Utils.egg-info/top_level.txt
11
+ pyquda_utils/__init__.py
12
+ pyquda_utils/_version.py
13
+ pyquda_utils/core.py
14
+ pyquda_utils/deprecated.py
15
+ pyquda_utils/gamma.py
16
+ pyquda_utils/hmc_param.py
17
+ pyquda_utils/phase.py
18
+ pyquda_utils/source.py
19
+ pyquda_utils/io/__init__.py
20
+ pyquda_utils/io/chroma.py
21
+ pyquda_utils/io/kyu.py
22
+ pyquda_utils/io/milc.py
23
+ pyquda_utils/io/npy.py
24
+ pyquda_utils/io/xqcd.py
pyquda_utils-0.9.0.dev3/PyQUDA_Utils.egg-info/top_level.txt ADDED
@@ -0,0 +1 @@
1
+ pyquda_utils
pyquda_utils-0.9.0.dev3/README.md ADDED
@@ -0,0 +1,69 @@
1
+ # PyQUDA
2
+
3
+ Python wrapper for [QUDA](https://github.com/lattice/quda) written in Cython.
4
+
5
+ This project aims to benefit from the optimized linear algebra library [CuPy](https://cupy.dev/) in Python based on CUDA. CuPy and QUDA will allow us to perform most lattice QCD research operations with high performance. [PyTorch](https://pytorch.org/) is an alternative option.
6
+
7
+ This project is based on the latest QUDA `develop` branch. PyQUDA should be compatible with any commit of QUDA after https://github.com/lattice/quda/pull/1489, but leave some features disabled.
8
+
9
+ ## Feature
10
+
11
+ - Multi-GPU supported
12
+ - with [MPI for Python](https://mpi4py.readthedocs.io/en/stable/) package
13
+ - File I/O
14
+ - Read gauge and propagator in Chroma format
15
+ - Read gauge and propagator in MILC format
16
+ - Read/write gauge and propagator in KYU format
17
+ - Read/write gauge and propagator in XQCD format
18
+ - Read/write gauge and propagator in NPY format (numpy)
19
+ - Quark propagator
20
+ - Isotropic/anisotropic Wilson fermion action with multigrid support
21
+ - Isotropic/anisotropic Clover fermion action with multigrid support
22
+ - Isotropic HISQ fermion action
23
+ - HMC
24
+ - Isotropic Wilson gauge action
25
+ - Isotropic Symanzik gauge action
26
+ - 1-flavor isotropic clover fermion action
27
+ - 2-flavor isotropic clover fermion action
28
+ - Gauge fixing
29
+ - Rotation field with over-relaxation method (waiting for QUDA merge)
30
+ - Gauge smearing
31
+ - 3D/4D APE smearing
32
+ - 3D/4D stout smearing
33
+ - 3D/4D HYP smearing
34
+ - Fermion smearing
35
+ - Gaussian smearing
36
+ - Gradient flow
37
+ - Wilson flow
38
+ - Symanzik flow
39
+
40
+ ## Installation
41
+
42
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Installation for detailed instructions to install PyQUDA from the source.
43
+
44
+ ## Benchmark
45
+
46
+ Refer to https://github.com/CLQCD/PyQUDA/wiki/Benchmark for detailed instructions to run the PyQUDA benchmark.
47
+
48
+ ## Documentation (draft)
49
+
50
+ https://github.com/CLQCD/PyQUDA/wiki/Documentation
51
+
52
+ ## Development
53
+
54
+ We recommend building PyQUDA using in-place mode instead of installing PyQUDA for development.
55
+
56
+ ```bash
57
+ git clone https://github.com/CLQCD/PyQUDA.git
58
+ cd PyQUDA
59
+ ln -s pyquda_core/pyquda pyquda
60
+ cd pyquda_core
61
+ export QUDA_PATH=/path/to/quda/build/usqcd
62
+ python3 setup.py build_ext --inplace
63
+ ```
64
+
65
+ Now you can modify Python files in the project and immediately get the new result by running scripts. Adding the root directory to `sys.path` is needed if you are running scripts from other directories.
66
+
67
+ ## Maintenance
68
+
69
+ Function definitions (mainly in `quda.in.pxd` and `pyquda.in.pyx`) and most docstrings (mainly in `pyquda.pyi` and `enum_quda.in.py`) should be manually updated as they cannot be autogenerated now. This also means PyQUDA should work well with future versions if the API remains unchanged.
pyquda_utils-0.9.0.dev3/pyproject.toml ADDED
@@ -0,0 +1,45 @@
1
+ [build-system]
2
+ requires = ["setuptools"]
3
+
4
+ [tool.setuptools.packages.find]
5
+ include = ["pyquda_utils*"]
6
+
7
+ [tool.setuptools.dynamic]
8
+ version = { attr = "pyquda_utils._version.__version__" }
9
+
10
+ [project]
11
+ dynamic = ["version"]
12
+ name = "PyQUDA-Utils"
13
+ dependencies = ["PyQUDA"]
14
+ requires-python = ">=3.8"
15
+ authors = [
16
+ { name = "SaltyChiang", email = "SaltyChiang@users.noreply.github.com" },
17
+ ]
18
+ maintainers = [
19
+ { name = "SaltyChiang", email = "SaltyChiang@users.noreply.github.com" },
20
+ ]
21
+ description = "Utility scripts based on PyQUDA"
22
+ readme = "README.md"
23
+ license = { file = "LICENSE" }
24
+ keywords = [
25
+ "lattice-gauge-theory",
26
+ "lattice-field-theory",
27
+ "lattice-qcd",
28
+ "hep-lat",
29
+ ]
30
+ classifiers = [
31
+ "Development Status :: 2 - Pre-Alpha",
32
+ "Programming Language :: Python :: 3 :: Only",
33
+ "Programming Language :: Cython",
34
+ "License :: OSI Approved :: MIT License",
35
+ "Operating System :: POSIX :: Linux",
36
+ "Environment :: GPU",
37
+ "Environment :: GPU :: NVIDIA CUDA",
38
+ "Topic :: Scientific/Engineering :: Physics",
39
+ ]
40
+
41
+ [project.urls]
42
+ Homepage = "https://github.com/CLQCD/PyQUDA"
43
+ Documentation = "https://github.com/CLQCD/PyQUDA/wiki/Documentation"
44
+ Repository = "https://github.com/CLQCD/PyQUDA.git"
45
+ Issues = "https://github.com/CLQCD/PyQUDA/issues"
pyquda_utils-0.9.0.dev3/pyquda_utils/__init__.py ADDED
@@ -0,0 +1 @@
1
+ from ._version import __version__ # noqa: F401
pyquda_utils-0.9.0.dev3/pyquda_utils/_version.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = "0.9.0.dev3"