PyOptik 1.3.0.post0__tar.gz → 1.4.0.post0__tar.gz

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/.gitignore

@@ -5,6 +5,9 @@
 *.pytest_cache
 *htmlcov
 *.coverage
+developments/*
+PyOptik/data/**/test*
+PyOptik/data/**/example*
 
 dist
 build

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PyOptik
-Version: 1.3.0.post0
+Version: 1.4.0.post0
 Summary: A package for refractive index values.
 Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
 License: MIT License
@@ -28,10 +28,6 @@ License: MIT License
 Keywords: refracive index,optics
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Development Status :: 4 - Beta
 Classifier: Topic :: Scientific/Engineering :: Physics
@@ -60,24 +56,6 @@ Requires-Dist: sphinx-gallery==0.15.0; extra == "documentation"
 Requires-Dist: sphinx-rtd-theme==2.0.0; extra == "documentation"
 Requires-Dist: pydata-sphinx-theme==0.14.1; extra == "documentation"
 
-.. |python| image:: https://img.shields.io/pypi/pyversions/pyoptik.svg
-   :target: https://www.python.org/
-
-.. |Logo| image:: https://github.com/MartinPdeS/PyOptik/raw/master/docs/images/logo.png
-
-.. |docs| image:: https://readthedocs.org/projects/pyoptik/badge/?version=latest
-   :target: https://pyoptik.readthedocs.io/en/latest/
-
-.. |PyPi| image:: https://badge.fury.io/py/pyoptik.svg
-   :target: https://badge.fury.io/py/pyoptik
-
-.. |PyPi_download| image:: https://img.shields.io/pypi/dm/pyoptik.svg
-   :target: https://pypistats.org/packages/pyoptik
-
-.. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyOptik/python-coverage-comment-action-data/badge.svg
-   :alt: Unittest coverage
-   :target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyOptik/blob/python-coverage-comment-action-data/htmlcov/index.html
-
 PyOptik
 =======
 
@@ -117,13 +95,11 @@ After installing PyOptik, you can easily access material properties:
    n = bk7.compute_refractive_index(0.55e-6)
    print(f"Refractive index at 0.55 µm: {n}")
 
-   # Accessing and plotting material properties
-   bk7.plot(wavelength_range=[0.3e-6, 2.5e-6])
 
 Example
 *******
 
-Here’s a quick example demonstrating how to use PyOptik to retrieve and plot the refractive index of a material:
+Here is a quick example demonstrating how to use PyOptik to retrieve and plot the refractive index of a material:
 
 .. code:: python
 
@@ -138,7 +114,34 @@ Here’s a quick example demonstrating how to use PyOptik to retrieve and plot t
    n_values = bk7.compute_refractive_index(wavelengths)
 
    # Plot the results
-   bk7.plot(wavelength_range=wavelengths)
+   bk7.plot()
+
+This code produces the following figure:
+
+|example_bk7|
+
+
+You can also add a custom element to your library providing a URL from `refractiveindex.info <https://refractiveindex.info>`_ website.
+
+.. code:: python
+
+   from PyOptik.utils import download_yml_file
+   from PyOptik.directories import sellmeier_data_path  # or tabulated_data_path for tabulated elements
+
+   download_yml_file(
+      filename='test',
+      url='https://refractiveindex.info/database/data-nk/main/H2O/Daimon-19.0C.yml',
+      location=tabulated_data_path
+   )
+
+Evidently, you can also remove element from the library using as follows:
+
+
+.. code:: python
+
+   from PyOptik.utils import remove_element
+
+   remove_element(filename='test', location='any')  # location can be "any", "sellmeier" or "tabulated"
 
 Testing
 *******
@@ -168,3 +171,22 @@ As of 2024, PyOptik is still under development. If you would like to collaborate
 
 
 
+.. |python| image:: https://img.shields.io/pypi/pyversions/pyoptik.svg
+   :target: https://www.python.org/
+
+.. |Logo| image:: https://github.com/MartinPdeS/PyOptik/raw/master/docs/images/logo.png
+
+.. |example_bk7| image:: https://github.com/MartinPdeS/PyOptik/blob/master/docs/images/example_bk7.png
+
+.. |docs| image:: https://readthedocs.org/projects/pyoptik/badge/?version=latest
+   :target: https://pyoptik.readthedocs.io/en/latest/
+
+.. |PyPi| image:: https://badge.fury.io/py/pyoptik.svg
+   :target: https://badge.fury.io/py/pyoptik
+
+.. |PyPi_download| image:: https://img.shields.io/pypi/dm/pyoptik.svg
+   :target: https://pypistats.org/packages/pyoptik
+
+.. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyOptik/python-coverage-comment-action-data/badge.svg
+   :alt: Unittest coverage
+   :target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyOptik/blob/python-coverage-comment-action-data/htmlcov/index.html

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik/__init__.py

@@ -7,4 +7,6 @@ except ImportError:
 
 from .utils import build_default_library
 from .material import UsualMaterial
-from .base_class import Material
+from .base_class import Material
+from .tabulated_class import TabulatedMaterial
+from .sellmeier_class import SellmeierMaterial

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '1.3.0.post0'
-__version_tuple__ = version_tuple = (1, 3, 0)
+__version__ = version = '1.4.0.post0'
+__version_tuple__ = version_tuple = (1, 4, 0)

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik/sellmeier_class.py

@@ -10,7 +10,7 @@ from PyOptik.directories import sellmeier_data_path
 import itertools
 import warnings
 from PyOptik.base_class import Material
-
+from MPSPlots.styles import mps
 
 @dataclass
 class SellmeierMaterial(Material):
@@ -136,26 +136,27 @@ class SellmeierMaterial(Material):
         Args:
             wavelength_range (Union[List[float], numpy.ndarray]): The range of wavelengths to plot, in meters.
         """
-        if wavelength is None:
-            wavelength = numpy.linspace(*self.wavelength_range, 100) * 1e-6
-
-        wavelength = numpy.asarray(wavelength)
-
-        if wavelength.ndim != 1:
-            raise ValueError("wavelength must be a 1D array or list of float values.")
-
-        # Calculate the refractive index over the wavelength range
-        refractive_index = self.compute_refractive_index(wavelength)
-
-        # Plotting
-        fig, ax = plt.subplots()
-        ax.set_xlabel('Wavelength [m]')
-        ax.set_ylabel('Refractive Index')
-        ax.plot(wavelength, refractive_index.real, linewidth=2, label='Real Part')
-        ax.legend()
-        ax.grid(True)
-        plt.tight_layout()
-        plt.show()
+        with plt.style.context(mps):
+            if wavelength is None:
+                wavelength = numpy.linspace(*self.wavelength_range, 100) * 1e-6
+
+            wavelength = numpy.asarray(wavelength)
+
+            if wavelength.ndim != 1:
+                raise ValueError("wavelength must be a 1D array or list of float values.")
+
+            # Calculate the refractive index over the wavelength range
+            refractive_index = self.compute_refractive_index(wavelength)
+
+            # Plotting
+            fig, ax = plt.subplots()
+            ax.set_xlabel('Wavelength [m]')
+            ax.set_ylabel('Refractive Index')
+            ax.plot(wavelength, refractive_index.real, linewidth=2, label='Real Part')
+            ax.legend()
+            ax.grid(True)
+            plt.tight_layout()
+            plt.show()
 
     def print(self) -> str:
         """

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik/tabulated_class.py

@@ -1,3 +1,6 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
 import numpy
 from dataclasses import dataclass, field
 from typing import Optional, Tuple, Union, List
@@ -6,6 +9,8 @@ from scipy.interpolate import interp1d
 import warnings
 from PyOptik.directories import tabulated_data_path
 from PyOptik.base_class import Material
+from MPSPlots.styles import mps
+import matplotlib.pyplot as plt
 
 @dataclass
 class TabulatedMaterial(Material):
@@ -80,22 +85,21 @@ class TabulatedMaterial(Material):
             n_values = self.n_values
             k_values = self.k_values
 
-        import matplotlib.pyplot as plt
-
-        fig, ax1 = plt.subplots()
+        with plt.style.context(mps):
+            fig, ax1 = plt.subplots()
 
-        ax1.set_xlabel('Wavelength [µm]')
-        ax1.set_ylabel('Refractive Index (n)', color='tab:blue')
-        ax1.plot(wavelength, n_values, 'o-', color='tab:blue', label='n')
-        ax1.tick_params(axis='y', labelcolor='tab:blue')
+            ax1.set_xlabel('Wavelength [µm]')
+            ax1.set_ylabel('Refractive Index (n)', color='tab:blue')
+            ax1.plot(wavelength, n_values, 'o-', color='tab:blue', label='n')
+            ax1.tick_params(axis='y', labelcolor='tab:blue')
 
-        ax2 = ax1.twinx()  # instantiate a second axes that shares the same x-axis
-        ax2.set_ylabel('Absorption (k)', color='tab:red')  # we already handled the x-label with ax1
-        ax2.plot(wavelength, k_values, 'o-', color='tab:red', label='k')
-        ax2.tick_params(axis='y', labelcolor='tab:red')
+            ax2 = ax1.twinx()  # instantiate a second axes that shares the same x-axis
+            ax2.set_ylabel('Absorption (k)', color='tab:red')  # we already handled the x-label with ax1
+            ax2.plot(wavelength, k_values, 'o-', color='tab:red', label='k')
+            ax2.tick_params(axis='y', labelcolor='tab:red')
 
-        fig.tight_layout()  # to prevent the right y-label from being slightly clipped
-        plt.show()
+            fig.tight_layout()  # to prevent the right y-label from being slightly clipped
+            plt.show()
 
     def print(self) -> str:
         """

pyoptik-1.4.0.post0/PyOptik/utils.py

@@ -0,0 +1,171 @@
+
+import yaml
+from typing import Optional, List, Tuple, NoReturn
+import requests
+from PyOptik.directories import sellmeier_data_path, tabulated_data_path
+from PyOptik.data.sellmeier.default import default_material as sellmeier_default
+from PyOptik.data.tabulated.default import default_material as tabulated_default
+
+def download_yml_file(url: str, filename: str, location: str) -> NoReturn:
+    """
+    Downloads a .yml file from a specified URL and saves it locally.
+
+    Args:
+        url (str): The URL of the .yml file to download.
+        save_path (str): The local path where the .yml file should be saved.
+
+    Raises:
+        HTTPError: If the download fails due to an HTTP error.
+    """
+    file_path = location / f"{filename}.yml"
+    try:
+        # Send a GET request to the URL
+        response = requests.get(url)
+        response.raise_for_status()  # Raise an error for bad status codes
+
+        # Save the content of the response as a file
+        file_path.parent.mkdir(parents=True, exist_ok=True)  # Create directories if they don't exist
+
+        with open(file_path, 'wb') as file:
+            file.write(response.content)
+
+        print(f"File downloaded and saved to {file_path}")
+
+    except requests.exceptions.HTTPError as http_err:
+        print(f"HTTP error occurred: {http_err}")
+    except Exception as err:
+        print(f"An error occurred: {err}")
+
+def build_default_library() -> NoReturn:
+    """
+    Downloads and saves the default materials from the specified URLs.
+    """
+    from PyOptik.utils import download_yml_file
+
+    for name, url in sellmeier_default.items():
+        download_yml_file(url=url, filename=name, location=sellmeier_data_path)
+
+    for name, url in tabulated_default.items():
+        download_yml_file(url=url, filename=name, location=tabulated_data_path)
+
+
+def remove_element(filename: str, location: str = 'any') -> None:
+    """
+    Remove a file associated with a given element name from the specified location.
+
+    Args:
+        filename (str): The name of the file to remove, without the '.yml' suffix.
+        location (str): The location to search for the file, either 'sellmeier', 'tabulated', or 'any' (default is 'any').
+
+    Raises:
+        FileNotFoundError: If the specified file does not exist.
+        ValueError: If an invalid location is provided.
+    """
+    location = location.lower()
+
+    if location not in ['any', 'sellmeier', 'tabulated']:
+        raise ValueError("Invalid location. Please choose 'sellmeier', 'tabulated', or 'any'.")
+
+    if location in ['any', 'sellmeier']:
+        sellmeier_file = sellmeier_data_path / f"{filename}.yml"
+        if sellmeier_file.exists():
+            sellmeier_file.unlink()
+
+    if location in ['any', 'tabulated']:
+        tabulated_file = tabulated_data_path / f"{filename}.yml"
+        if tabulated_file.exists():
+            tabulated_file.unlink()
+
+def create_sellmeier_file(
+    filename: str,
+    formula_type: int,
+    coefficients: List[float],
+    wavelength_range: Optional[Tuple[float, float]] = None,
+    reference: Optional[str] = None,
+    comments: Optional[str] = None,
+    specs: Optional[dict] = None) -> NoReturn:
+    """
+    Creates a YAML file with custom Sellmeier coefficients in the correct format.
+
+    Args:
+        filename (str): The name of the file to create (without the extension).
+        formula_type (int): The type of Sellmeier formula.
+        coefficients (list[float]): A list of coefficients for the Sellmeier equation.
+        wavelength_range (Tuple[float, float]): The range of wavelengths, in micrometers.
+        reference (str): A reference for the material data.
+        comments (Optional[str]): Additional comments about the material.
+        specs (Optional[dict]): Additional specifications, such as temperature and whether the wavelength is in a vacuum.
+    """
+    reference = 'None' if reference is None else reference
+    wavelength_range = [None, None] if wavelength_range is None else wavelength_range
+    # Create the data dictionary for YAML
+    data = {
+        'REFERENCES': reference,
+        'DATA': [
+            {
+                'type': f'formula {formula_type}',
+                'wavelength_range': f"{wavelength_range[0]} {wavelength_range[1]}",
+                'coefficients': " ".join(map(str, coefficients)),
+            }
+        ]
+    }
+
+    # Add comments if provided
+    if comments:
+        data['COMMENTS'] = comments
+
+    # Add specs if provided
+    if specs:
+        data['SPECS'] = specs
+
+    # Define the file path
+    file_path = sellmeier_data_path / f"{filename}.yml"
+
+    # Write the data to a YAML file
+    with open(file_path, 'w') as file:
+        yaml.dump(data, file, default_flow_style=False)
+
+    print(f"Sellmeier data saved to {file_path}")
+
+def create_tabulated_file(
+    filename: str,
+    data: List[Tuple[float, float, float]],
+    reference: Optional[str] = None,
+    comments: Optional[str] = None) -> NoReturn:
+    """
+    Creates a YAML file with tabulated nk data in the correct format.
+
+    Args:
+        filename (str): The name of the file to create (without the extension).
+        data (List[Tuple[float, float, float]]): The tabulated nk data.
+        reference (Optional[str]): A reference for the material data.
+        comments (Optional[str]): Additional comments about the material.
+    """
+    reference = 'None' if reference is None else reference
+
+    # Convert the data list to a formatted string
+    data_str = "\n".join(" ".join(map(str, row)) for row in data)
+
+    # Create the data dictionary for YAML
+    yaml_data = {
+        'REFERENCES': reference,
+        'DATA': [
+            {
+                'type': 'tabulated nk',
+                'data': data_str,
+            }
+        ]
+    }
+
+    # Add comments if provided
+    if comments:
+        yaml_data['COMMENTS'] = comments
+
+    # Define the file path
+    file_path = tabulated_data_path / f"{filename}.yml"
+
+    # Write the data to a YAML file
+    with open(file_path, 'w') as file:
+        yaml.dump(yaml_data, file, default_flow_style=False)
+
+    print(f"Tabulated nk data saved to {file_path}")

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PyOptik
-Version: 1.3.0.post0
+Version: 1.4.0.post0
 Summary: A package for refractive index values.
 Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
 License: MIT License
@@ -28,10 +28,6 @@ License: MIT License
 Keywords: refracive index,optics
 Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Development Status :: 4 - Beta
 Classifier: Topic :: Scientific/Engineering :: Physics
@@ -60,24 +56,6 @@ Requires-Dist: sphinx-gallery==0.15.0; extra == "documentation"
 Requires-Dist: sphinx-rtd-theme==2.0.0; extra == "documentation"
 Requires-Dist: pydata-sphinx-theme==0.14.1; extra == "documentation"
 
-.. |python| image:: https://img.shields.io/pypi/pyversions/pyoptik.svg
-   :target: https://www.python.org/
-
-.. |Logo| image:: https://github.com/MartinPdeS/PyOptik/raw/master/docs/images/logo.png
-
-.. |docs| image:: https://readthedocs.org/projects/pyoptik/badge/?version=latest
-   :target: https://pyoptik.readthedocs.io/en/latest/
-
-.. |PyPi| image:: https://badge.fury.io/py/pyoptik.svg
-   :target: https://badge.fury.io/py/pyoptik
-
-.. |PyPi_download| image:: https://img.shields.io/pypi/dm/pyoptik.svg
-   :target: https://pypistats.org/packages/pyoptik
-
-.. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyOptik/python-coverage-comment-action-data/badge.svg
-   :alt: Unittest coverage
-   :target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyOptik/blob/python-coverage-comment-action-data/htmlcov/index.html
-
 PyOptik
 =======
 
@@ -117,13 +95,11 @@ After installing PyOptik, you can easily access material properties:
    n = bk7.compute_refractive_index(0.55e-6)
    print(f"Refractive index at 0.55 µm: {n}")
 
-   # Accessing and plotting material properties
-   bk7.plot(wavelength_range=[0.3e-6, 2.5e-6])
 
 Example
 *******
 
-Here’s a quick example demonstrating how to use PyOptik to retrieve and plot the refractive index of a material:
+Here is a quick example demonstrating how to use PyOptik to retrieve and plot the refractive index of a material:
 
 .. code:: python
 
@@ -138,7 +114,34 @@ Here’s a quick example demonstrating how to use PyOptik to retrieve and plot t
    n_values = bk7.compute_refractive_index(wavelengths)
 
    # Plot the results
-   bk7.plot(wavelength_range=wavelengths)
+   bk7.plot()
+
+This code produces the following figure:
+
+|example_bk7|
+
+
+You can also add a custom element to your library providing a URL from `refractiveindex.info <https://refractiveindex.info>`_ website.
+
+.. code:: python
+
+   from PyOptik.utils import download_yml_file
+   from PyOptik.directories import sellmeier_data_path  # or tabulated_data_path for tabulated elements
+
+   download_yml_file(
+      filename='test',
+      url='https://refractiveindex.info/database/data-nk/main/H2O/Daimon-19.0C.yml',
+      location=tabulated_data_path
+   )
+
+Evidently, you can also remove element from the library using as follows:
+
+
+.. code:: python
+
+   from PyOptik.utils import remove_element
+
+   remove_element(filename='test', location='any')  # location can be "any", "sellmeier" or "tabulated"
 
 Testing
 *******
@@ -168,3 +171,22 @@ As of 2024, PyOptik is still under development. If you would like to collaborate
 
 
 
+.. |python| image:: https://img.shields.io/pypi/pyversions/pyoptik.svg
+   :target: https://www.python.org/
+
+.. |Logo| image:: https://github.com/MartinPdeS/PyOptik/raw/master/docs/images/logo.png
+
+.. |example_bk7| image:: https://github.com/MartinPdeS/PyOptik/blob/master/docs/images/example_bk7.png
+
+.. |docs| image:: https://readthedocs.org/projects/pyoptik/badge/?version=latest
+   :target: https://pyoptik.readthedocs.io/en/latest/
+
+.. |PyPi| image:: https://badge.fury.io/py/pyoptik.svg
+   :target: https://badge.fury.io/py/pyoptik
+
+.. |PyPi_download| image:: https://img.shields.io/pypi/dm/pyoptik.svg
+   :target: https://pypistats.org/packages/pyoptik
+
+.. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyOptik/python-coverage-comment-action-data/badge.svg
+   :alt: Unittest coverage
+   :target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyOptik/blob/python-coverage-comment-action-data/htmlcov/index.html

{pyoptik-1.3.0.post0 → pyoptik-1.4.0.post0}/PyOptik.egg-info/SOURCES.txt

@@ -21,7 +21,6 @@ PyOptik.egg-info/dependency_links.txt
 PyOptik.egg-info/requires.txt
 PyOptik.egg-info/top_level.txt
 PyOptik/data/__init__.py
-PyOptik/data/test.yml
 PyOptik/data/sellmeier/BAK1.yml
 PyOptik/data/sellmeier/BK7.yml
 PyOptik/data/sellmeier/SF5.yml
@@ -40,7 +39,6 @@ PyOptik/data/sellmeier/polystyren.yml
 PyOptik/data/sellmeier/silica.yml
 PyOptik/data/sellmeier/silicon.yml
 PyOptik/data/sellmeier/soda_lime_glass.yml
-PyOptik/data/sellmeier/test.yml
 PyOptik/data/sellmeier/water.yml
 PyOptik/data/tabulated/__init__.py
 PyOptik/data/tabulated/aluminium.yml
@@ -52,18 +50,20 @@ PyOptik/data/tabulated/iron.yml
 PyOptik/data/tabulated/nickel.yml
 PyOptik/data/tabulated/silver.yml
 PyOptik/data/tabulated/sodium.yml
-PyOptik/data/tabulated/test.yml
 PyOptik/data/tabulated/zinc.yml
-developments/testing.py
 docs/Makefile
 docs/make.bat
 docs/deprecated/experiment_material.py
 docs/examples/README.rst
+docs/examples/create_sellmeier_file.py
+docs/examples/create_tabulated_file.py
+docs/examples/download_yml_file.py
 docs/examples/plot_bk7.py
 docs/examples/plot_sf5.py
 docs/examples/plot_silica.py
 docs/examples/plot_silver.py
 docs/examples/plot_water.py
+docs/images/example_bk7.png
 docs/images/logo.png
 docs/source/code.rst
 docs/source/conf.py
@@ -74,11 +74,31 @@ docs/source/gallery/add_material.ipynb
 docs/source/gallery/add_material.py
 docs/source/gallery/add_material.rst
 docs/source/gallery/add_material_codeobj.pickle
+docs/source/gallery/create_sellmeier_file.ipynb
+docs/source/gallery/create_sellmeier_file.py
+docs/source/gallery/create_sellmeier_file.py.md5
+docs/source/gallery/create_sellmeier_file.rst
+docs/source/gallery/create_sellmeier_file_codeobj.pickle
+docs/source/gallery/create_tabulated_file.ipynb
+docs/source/gallery/create_tabulated_file.py
+docs/source/gallery/create_tabulated_file.py.md5
+docs/source/gallery/create_tabulated_file.rst
+docs/source/gallery/create_tabulated_file_codeobj.pickle
+docs/source/gallery/download_yml_file.ipynb
+docs/source/gallery/download_yml_file.py
+docs/source/gallery/download_yml_file.py.md5
+docs/source/gallery/download_yml_file.rst
+docs/source/gallery/download_yml_file_codeobj.pickle
 docs/source/gallery/get_values.ipynb
 docs/source/gallery/get_values.py
 docs/source/gallery/get_values.rst
 docs/source/gallery/get_values_codeobj.pickle
 docs/source/gallery/index.rst
+docs/source/gallery/plot_bk7.ipynb
+docs/source/gallery/plot_bk7.py
+docs/source/gallery/plot_bk7.py.md5
+docs/source/gallery/plot_bk7.rst
+docs/source/gallery/plot_bk7_codeobj.pickle
 docs/source/gallery/plot_sellmeier_0.ipynb
 docs/source/gallery/plot_sellmeier_0.py
 docs/source/gallery/plot_sellmeier_0.py.md5
@@ -89,15 +109,51 @@ docs/source/gallery/plot_sellmeier_1.py
 docs/source/gallery/plot_sellmeier_1.py.md5
 docs/source/gallery/plot_sellmeier_1.rst
 docs/source/gallery/plot_sellmeier_1_codeobj.pickle
+docs/source/gallery/plot_sf5.ipynb
+docs/source/gallery/plot_sf5.py
+docs/source/gallery/plot_sf5.py.md5
+docs/source/gallery/plot_sf5.rst
+docs/source/gallery/plot_sf5_codeobj.pickle
+docs/source/gallery/plot_silica.ipynb
+docs/source/gallery/plot_silica.py
+docs/source/gallery/plot_silica.py.md5
+docs/source/gallery/plot_silica.rst
+docs/source/gallery/plot_silica_codeobj.pickle
+docs/source/gallery/plot_silver.ipynb
+docs/source/gallery/plot_silver.py
+docs/source/gallery/plot_silver.py.md5
+docs/source/gallery/plot_silver.rst
+docs/source/gallery/plot_silver_codeobj.pickle
+docs/source/gallery/plot_water.ipynb
+docs/source/gallery/plot_water.py
+docs/source/gallery/plot_water.py.md5
+docs/source/gallery/plot_water.rst
+docs/source/gallery/plot_water_codeobj.pickle
 docs/source/gallery/sg_execution_times.rst
+docs/source/gallery/images/sphx_glr_create_sellmeier_file_001.png
+docs/source/gallery/images/sphx_glr_create_tabulated_file_001.png
+docs/source/gallery/images/sphx_glr_download_yml_file_001.png
+docs/source/gallery/images/sphx_glr_plot_bk7_001.png
 docs/source/gallery/images/sphx_glr_plot_sellmeier_0_001.png
 docs/source/gallery/images/sphx_glr_plot_sellmeier_1_001.png
+docs/source/gallery/images/sphx_glr_plot_sf5_001.png
+docs/source/gallery/images/sphx_glr_plot_silica_001.png
+docs/source/gallery/images/sphx_glr_plot_silver_001.png
+docs/source/gallery/images/sphx_glr_plot_water_001.png
 docs/source/gallery/images/thumb/sphx_glr_add_material_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_create_sellmeier_file_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_create_tabulated_file_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_download_yml_file_thumb.png
 docs/source/gallery/images/thumb/sphx_glr_get_values_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_plot_bk7_thumb.png
 docs/source/gallery/images/thumb/sphx_glr_plot_sellmeier_0_thumb.png
 docs/source/gallery/images/thumb/sphx_glr_plot_sellmeier_1_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_plot_sf5_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_plot_silica_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_plot_silver_thumb.png
+docs/source/gallery/images/thumb/sphx_glr_plot_water_thumb.png
 tests/__init__.py
-tests/test_extra.py
 tests/test_sellmeier.py
 tests/test_tabulated.py
-tests/test_usual_material.py
+tests/test_usual_material.py
+tests/test_utils.py