PyOptik 1.1.2.post0__tar.gz → 1.1.3.post0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.coverage +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PKG-INFO +83 -35
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/__init__.py +2 -1
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/_version.py +2 -2
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik.egg-info/PKG-INFO +83 -35
- pyoptik-1.1.3.post0/README.rst +108 -0
- pyoptik-1.1.3.post0/developments/testing.py +12 -0
- pyoptik-1.1.2.post0/README.rst +0 -60
- pyoptik-1.1.2.post0/developments/testing.py +0 -123
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.github/dependabot.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.github/workflows/coverage.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.github/workflows/deploy_workflow.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.gitignore +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/.readthedocs.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/LICENSE +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/base_class.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/__init__.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/BAK1.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/BK7.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/SF5.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/ZBLAN.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/__init__.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/argon.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/crown.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/default.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/flint.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/fluorine_doped_silica_1%.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/fluorine_doped_silica_2%.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/fused_silica.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/germanium.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/lithium_niobate.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/polystyren.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/silica.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/silicon.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/soda_lime_glass.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/test.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/sellmeier/water.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/__init__.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/aluminium.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/calcium.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/copper.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/default.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/gold.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/iron.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/nickel.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/silver.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/sodium.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/test.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/tabulated/zinc.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/data/test.yml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/directories.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/download.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/material.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/sellmeier_class.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/tabulated_class.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik/utils.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik.egg-info/SOURCES.txt +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik.egg-info/dependency_links.txt +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik.egg-info/requires.txt +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/PyOptik.egg-info/top_level.txt +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/Makefile +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/deprecated/experiment_material.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/README.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/measurements_tio2.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/measurements_water.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/sellmeier_bk7.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/sellmeier_sf5.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/examples/sellmeier_silica.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/images/logo.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/make.bat +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/_static/default.css +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/code.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/conf.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/add_material.ipynb +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/add_material.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/add_material.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/add_material_codeobj.pickle +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/get_values.ipynb +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/get_values.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/get_values.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/get_values_codeobj.pickle +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/sphx_glr_plot_sellmeier_0_001.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/sphx_glr_plot_sellmeier_1_001.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/thumb/sphx_glr_add_material_thumb.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/thumb/sphx_glr_get_values_thumb.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/thumb/sphx_glr_plot_sellmeier_0_thumb.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/images/thumb/sphx_glr_plot_sellmeier_1_thumb.png +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/index.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_0.ipynb +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_0.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_0.py.md5 +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_0.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_0_codeobj.pickle +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_1.ipynb +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_1.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_1.py.md5 +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_1.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/plot_sellmeier_1_codeobj.pickle +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/gallery/sg_execution_times.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/index.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/docs/source/references.rst +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/pyproject.toml +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/setup.cfg +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/tests/__init__.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/tests/test_extra.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/tests/test_sellmeier.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/tests/test_tabulated.py +0 -0
- {pyoptik-1.1.2.post0 → pyoptik-1.1.3.post0}/tests/test_usual_material.py +0 -0
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Name: PyOptik
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Version: 1.1.
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Version: 1.1.3.post0
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Summary: A package for refractive index values.
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Author-email: Martin Poinsinet de Sivry-Houle <martin.poinsinet.de.sivry@gmail.com>
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License: MIT License
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PyOptik
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=======
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PyOptik is a powerful Python tool designed to import refractive indexes and extinction coefficients for various materials across different wavelengths. The data provided by PyOptik can be used in numerous applications, including simulating light interactions with particles. All data is sourced from the reputable RefractiveIndex.INFO database.
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coefficients for different materials at different wavelengths. This data can then
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be used for different applications like simulating light interaction's with
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particules. All the data comes from RefractiveIndex.INFO.
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- **Comprehensive Database Access**: Seamlessly import refractive index and extinction coefficient data for a wide range of materials.
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- **Simulation Ready**: Ideal for light-matter interaction simulations, particularly in optics and photonics.
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- **Simple API**: Easy-to-use API that integrates well with other Python libraries.
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- **Open Source**: Fully open-source.
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Installation
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To install PyOptik, simply use pip:
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Usage
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*****
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After installing PyOptik, you can easily access material properties:
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.. code:: python
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# Access the refractive index of BK7 glass
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n = bk7.compute_refractive_index(0.55e-6)
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print(f"Refractive index at 0.55 µm: {n}")
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Example
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Here’s a quick example demonstrating how to use PyOptik to retrieve and plot the refractive index of a material:
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As of 2024, the project is still under development. If you want to collaborate, it would be a pleasure! I encourage you to contact me.
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Contributing
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particules. All the data comes from RefractiveIndex.INFO.
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Testing
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*******
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To test localy (with cloning the GitHub repository) you'll need to install the dependencies and run the coverage command as
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.. code:: python
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----
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Contact Information
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************************
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As of 2024, the project is still under development. If you want to collaborate, it would be a pleasure! I encourage you to contact me.
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PyOptik was written by `Martin Poinsinet de Sivry-Houle <https://github.com/MartinPdS>`_ .
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Email:`martin.poinsinet-de-sivry@polymtl.ca <mailto:martin.poinsinet-de-sivry@polymtl.ca?subject=PyOptik>`_ .
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.. |python| image:: https://img.shields.io/pypi/pyversions/pyoptik.svg
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:target: https://www.python.org/
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.. |Logo| image:: https://github.com/MartinPdeS/PyOptik/raw/master/docs/images/logo.png
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.. |docs| image:: https://readthedocs.org/projects/pyoptik/badge/?version=latest
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:target: https://pyoptik.readthedocs.io/en/latest/
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.. |PyPi| image:: https://badge.fury.io/py/pyoptik.svg
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:target: https://badge.fury.io/py/pyoptik
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.. |PyPi_download| image:: https://img.shields.io/pypi/dm/pyoptik.svg
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:target: https://pypistats.org/packages/pyoptik
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.. |coverage| image:: https://raw.githubusercontent.com/MartinPdeS/PyOptik/python-coverage-comment-action-data/badge.svg
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:alt: Unittest coverage
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:target: https://htmlpreview.github.io/?https://github.com/MartinPdeS/PyOptik/blob/python-coverage-comment-action-data/htmlcov/index.html
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@@ -1,123 +0,0 @@
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import numpy
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from dataclasses import dataclass, field
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from typing import Optional, Tuple, Union
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import yaml
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from scipy.interpolate import interp1d
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import warnings
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from PyOptik.directories import tabulated_data_path
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@dataclass
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class TabulatedMaterial:
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filename: str
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wavelength: numpy.ndarray = field(init=False)
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n_values: numpy.ndarray = field(init=False)
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k_values: numpy.ndarray = field(init=False)
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reference: Optional[str] = field(init=False)
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def __post_init__(self) -> None:
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"""
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Post-initialization method to load the tabulated data from the YAML file.
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"""
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self.load_tabulated_data()
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def load_tabulated_data(self) -> None:
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"""
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Loads the tabulated refractive index and absorption values from the specified YAML file.
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"""
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file_path = tabulated_data_path / f'{self.filename}.yml'
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with open(file_path, 'r') as file:
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parsed_yaml = yaml.safe_load(file)
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# Extract data points
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data_points = parsed_yaml['DATA'][0]['data'].strip().split('\n')
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data = numpy.array([[float(value) for value in point.split()] for point in data_points])
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self.wavelength = data[:, 0]
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self.n_values = data[:, 1]
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self.k_values = data[:, 2]
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# Extract reference
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self.reference = parsed_yaml.get('REFERENCES', None)
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def interpolate_nk(self, wavelength: Union[float, numpy.ndarray]) -> Tuple[numpy.ndarray, numpy.ndarray]:
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"""
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Interpolates the refractive index (n) and absorption (k) values for the given wavelength(s).
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Args:
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wavelength (Union[float, numpy.ndarray]): Wavelength(s) in micrometers for which to interpolate n and k.
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Returns:
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Tuple[numpy.ndarray, numpy.ndarray]: Interpolated refractive index (n) and absorption (k) values.
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Raises:
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ValueError: If the wavelength is outside the tabulated range.
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"""
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if isinstance(wavelength, float):
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wavelength = numpy.array([wavelength])
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if numpy.any(wavelength < self.wavelength.min()) or numpy.any(wavelength > self.wavelength.max()):
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warnings.warn(f"Wavelength is outside the tabulated range of {self.wavelength.min()} µm to {self.wavelength.max()} µm. [{self.filename}]")
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n_interp = interp1d(self.wavelength, self.n_values, kind='cubic', fill_value='extrapolate')
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k_interp = interp1d(self.wavelength, self.k_values, kind='cubic', fill_value='extrapolate')
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return n_interp(wavelength), k_interp(wavelength)
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def plot_nk(self) -> None:
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"""
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Plots the tabulated refractive index (n) and absorption (k) as a function of wavelength.
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"""
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import matplotlib.pyplot as plt
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fig, ax1 = plt.subplots()
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ax1.set_xlabel('Wavelength [µm]')
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ax1.set_ylabel('Refractive Index (n)', color='tab:blue')
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ax1.plot(self.wavelength, self.n_values, 'o-', color='tab:blue', label='n')
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ax1.tick_params(axis='y', labelcolor='tab:blue')
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ax2 = ax1.twinx() # instantiate a second axes that shares the same x-axis
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ax2.set_ylabel('Absorption (k)', color='tab:red') # we already handled the x-label with ax1
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ax2.plot(self.wavelength, self.k_values, 'o-', color='tab:red', label='k')
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ax2.tick_params(axis='y', labelcolor='tab:red')
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fig.tight_layout() # to prevent the right y-label from being slightly clipped
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plt.show()
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def print(self) -> str:
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"""
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Provides a formal string representation of the TabulatedMaterial object, including key attributes.
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Returns:
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str: Formal representation of the TabulatedMaterial object.
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"""
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return (
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f"\nTabulatedMaterial: '{self.filename}',\n"
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f"wavelength_range: [{self.wavelength.min()} µm, {self.wavelength.max()} µm],\n"
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f"reference: '{self.reference}')"
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)
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def __str__(self) -> str:
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"""
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Provides an informal string representation of the TabulatedMaterial object.
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Returns:
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str: Informal representation of the TabulatedMaterial object.
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"""
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return f"TabulatedMaterial: {self.filename}"
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def __repr__(self) -> str:
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"""
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Provides a formal string representation of the TabulatedMaterial object, including key attributes.
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Returns:
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str: Formal representation of the TabulatedMaterial object.
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"""
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return self.__str__()
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m = TabulatedMaterial('silver')
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m.plot_nk()
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print(m)
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