PyOVERCAST 1.0.10__tar.gz → 1.0.12__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (14) hide show
  1. {pyovercast-1.0.10 → pyovercast-1.0.12}/PKG-INFO +1 -1
  2. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST/predict.py +7 -4
  3. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/PKG-INFO +1 -1
  4. {pyovercast-1.0.10 → pyovercast-1.0.12}/pyproject.toml +1 -1
  5. {pyovercast-1.0.10 → pyovercast-1.0.12}/LICENSE +0 -0
  6. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST/__init__.py +0 -0
  7. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST/clinks.py +0 -0
  8. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/SOURCES.txt +0 -0
  9. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/dependency_links.txt +0 -0
  10. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/entry_points.txt +0 -0
  11. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/requires.txt +0 -0
  12. {pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/top_level.txt +0 -0
  13. {pyovercast-1.0.10 → pyovercast-1.0.12}/README.md +0 -0
  14. {pyovercast-1.0.10 → pyovercast-1.0.12}/setup.cfg +0 -0
{pyovercast-1.0.10 → pyovercast-1.0.12}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: PyOVERCAST
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- Version: 1.0.10
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+ Version: 1.0.12
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  Summary: A Python package for mining key transcription factors from transcriptome data.
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  Author-email: Tinghua Huang <thua45@126.com>
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  License-Expression: MIT
{pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST/predict.py RENAMED
@@ -529,12 +529,15 @@ def permutation(gene_set, gene_list):
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  gene_sample = random.sample(diff_idx, min(gene_set0.shape[0], len(diff_idx)))
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  set1_values = []
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- set0_max, set0_min = gene_set0[gene_set0.columns[1]].max(), gene_set0[gene_set0.columns[1]].min()
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+ col1 = gene_set0.columns[1]
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+ set0_max, set0_min = gene_set0.loc[gene_set0[col1] >= 0.0, col1].min(), gene_set0.loc[gene_set0[col1] <= 0.0, col1].max()
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  set0_range = set0_max - set0_min
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  if set0_range < 0.0:
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- set0_range = set0_min
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- for gene in gene_sample:
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- set1_values.append(random.uniform(set0_min - set0_range, set0_min))
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+ for gene in gene_sample:
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+ set1_values.append(random.uniform(set0_max, set0_min) + (random.uniform(1E-15, 1E-10) * random.choice([1, -1])))
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+ else:
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+ for gene in gene_sample:
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+ set1_values.append(random.uniform(set0_min, set0_max) + (random.uniform(1E-15, 1E-10) * random.choice([1, -1])))
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  gene_set1 = pd.DataFrame({"gene": gene_sample, "logFC": set1_values}, index=gene_sample)
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  gene_set_pt = pd.concat([gene_set0, gene_set1], axis=0)
{pyovercast-1.0.10 → pyovercast-1.0.12}/PyOVERCAST.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: PyOVERCAST
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- Version: 1.0.10
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+ Version: 1.0.12
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  Summary: A Python package for mining key transcription factors from transcriptome data.
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  Author-email: Tinghua Huang <thua45@126.com>
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  License-Expression: MIT
{pyovercast-1.0.10 → pyovercast-1.0.12}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "PyOVERCAST"
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- version = "1.0.10"
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+ version = "1.0.12"
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  license = "MIT" # SPDX expression
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  description = "A Python package for mining key transcription factors from transcriptome data."
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  readme = "README.md"
{pyovercast-1.0.10 → pyovercast-1.0.12}/LICENSE RENAMED
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{pyovercast-1.0.10 → pyovercast-1.0.12}/README.md RENAMED
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{pyovercast-1.0.10 → pyovercast-1.0.12}/setup.cfg RENAMED
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