PyOPIA 2.5.3__tar.gz → 2.5.5__tar.gz

{pyopia-2.5.3 → pyopia-2.5.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: PyOPIA
-Version: 2.5.3
+Version: 2.5.5
 Summary: A Python Ocean Particle Image Analysis toolbox.
 Home-page: https://github.com/sintef/pyopia
 Keywords: Ocean,Particles,Imaging,Measurement,Size distribution

pyopia-2.5.5/pyopia/__init__.py

@@ -0,0 +1 @@
+__version__ = '2.5.5'

{pyopia-2.5.3 → pyopia-2.5.5}/pyopia/cli.py

@@ -132,8 +132,9 @@ def process(config_filename: str, num_chunks: int = 1):
 
         progress.console.print("[blue]OBTAIN FILE LIST")
         raw_files = pyopia.pipeline.FilesToProcess(pipeline_config['general']['raw_files'])
-        average_window = pipeline_config['steps']['correctbackground'].get('average_window', 0)
-        bgshift_function = pipeline_config['steps']['correctbackground'].get('bgshift_function', 'pass')
+        conf_corrbg = pipeline_config['steps'].get('correctbackground', dict())
+        average_window = conf_corrbg.get('average_window', 0)
+        bgshift_function = conf_corrbg.get('bgshift_function', 'pass')
         raw_files.prepare_chunking(num_chunks, average_window, bgshift_function)
 
         progress.console.print('[blue]PREPARE FOLDERS')

{pyopia-2.5.3 → pyopia-2.5.5}/pyopia/io.py

@@ -390,7 +390,7 @@ def load_toml(toml_file):
     return settings
 
 
-def StatsH5():
+def StatsH5(**kwargs):
     '''.. deprecated:: 2.4.8
         :class:`pyopia.io.StatsH5` will be removed in version 3.0.0, it is replaced by
         :class:`pyopia.io.StatsToDisc`.
@@ -430,4 +430,4 @@ def StatsH5():
         append = true
     '''
     logger.warning('StatsH5 will be removed in version 3.0.0, it is replaced by pyopia.io.StatsToDisc')
-    return StatsToDisc()
+    return StatsToDisc(**kwargs)

pyopia-2.5.3/pyopia/__init__.py

@@ -1 +0,0 @@
-__version__ = '2.5.3'