PyOPIA 2.5.3__tar.gz → 2.5.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. {pyopia-2.5.3 → pyopia-2.5.4}/PKG-INFO +1 -1
  2. pyopia-2.5.4/pyopia/__init__.py +1 -0
  3. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/cli.py +3 -2
  4. pyopia-2.5.3/pyopia/__init__.py +0 -1
  5. {pyopia-2.5.3 → pyopia-2.5.4}/LICENSE +0 -0
  6. {pyopia-2.5.3 → pyopia-2.5.4}/README.md +0 -0
  7. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/background.py +0 -0
  8. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/classify.py +0 -0
  9. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/exampledata.py +0 -0
  10. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/__init__.py +0 -0
  11. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/common.py +0 -0
  12. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/holo.py +0 -0
  13. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/silcam.py +0 -0
  14. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/uvp.py +0 -0
  15. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/io.py +0 -0
  16. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/pipeline.py +0 -0
  17. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/plotting.py +0 -0
  18. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/process.py +0 -0
  19. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/simulator/__init__.py +0 -0
  20. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/simulator/silcam.py +0 -0
  21. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/statistics.py +0 -0
  22. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/tests/__init__.py +0 -0
  23. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/tests/test_classify.py +0 -0
  24. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/tests/test_notebooks.py +0 -0
  25. {pyopia-2.5.3 → pyopia-2.5.4}/pyopia/tests/test_pipeline.py +0 -0
  26. {pyopia-2.5.3 → pyopia-2.5.4}/pyproject.toml +0 -0
{pyopia-2.5.3 → pyopia-2.5.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: PyOPIA
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- Version: 2.5.3
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+ Version: 2.5.4
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  Summary: A Python Ocean Particle Image Analysis toolbox.
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  Home-page: https://github.com/sintef/pyopia
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  Keywords: Ocean,Particles,Imaging,Measurement,Size distribution
pyopia-2.5.4/pyopia/__init__.py ADDED
@@ -0,0 +1 @@
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+ __version__ = '2.5.4'
{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/cli.py RENAMED
@@ -132,8 +132,9 @@ def process(config_filename: str, num_chunks: int = 1):
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  progress.console.print("[blue]OBTAIN FILE LIST")
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  raw_files = pyopia.pipeline.FilesToProcess(pipeline_config['general']['raw_files'])
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- average_window = pipeline_config['steps']['correctbackground'].get('average_window', 0)
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- bgshift_function = pipeline_config['steps']['correctbackground'].get('bgshift_function', 'pass')
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+ conf_corrbg = pipeline_config['steps'].get('correctbackground', dict())
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+ average_window = conf_corrbg.get('average_window', 0)
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+ bgshift_function = conf_corrbg.get('bgshift_function', 'pass')
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  raw_files.prepare_chunking(num_chunks, average_window, bgshift_function)
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  progress.console.print('[blue]PREPARE FOLDERS')
pyopia-2.5.3/pyopia/__init__.py DELETED
@@ -1 +0,0 @@
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- __version__ = '2.5.3'
{pyopia-2.5.3 → pyopia-2.5.4}/LICENSE RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/README.md RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/background.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/classify.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/exampledata.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/holo.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/instrument/uvp.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/io.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/pipeline.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/plotting.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/process.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/statistics.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyopia/tests/__init__.py RENAMED
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{pyopia-2.5.3 → pyopia-2.5.4}/pyproject.toml RENAMED
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