PyNOT-redux 2.4.3__tar.gz → 2.4.5__tar.gz

{pynot_redux-2.4.3 → pynot_redux-2.4.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: PyNOT-redux
-Version: 2.4.3
+Version: 2.4.5
 Summary: Data Reduction Pipeline for NOT/ALFOSC
 Home-page: https://github.com/jkrogager/PyNOT
 Author: Jens-Kristian Krogager

{pynot_redux-2.4.3 → pynot_redux-2.4.5}/PyNOT_redux.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: PyNOT-redux
-Version: 2.4.3
+Version: 2.4.5
 Summary: Data Reduction Pipeline for NOT/ALFOSC
 Home-page: https://github.com/jkrogager/PyNOT
 Author: Jens-Kristian Krogager

pynot_redux-2.4.5/pynot/VERSION

@@ -0,0 +1 @@
+2.4.5

{pynot_redux-2.4.3 → pynot_redux-2.4.5}/pynot/fitsio.py

@@ -129,10 +129,12 @@ def get_wavelength_from_header(hdr):
 
 
 # -- These names are used to define proper column names for Wavelength, Flux and Error:
-wavelength_column_names = ['wl', 'lam', 'lambda', 'loglam', 'wave', 'wavelength', 'awav']
-flux_column_names = ['data', 'spec', 'flux', 'flam', 'fnu', 'flux_density', 'reduced_flux']
-error_column_names = ['err', 'sig', 'error', 'ivar', 'sigma', 'var', 'err_flux', 'flux_ivar', 'flux_var', 'flux_err']
-mask_column_names = ['mask', 'qual', 'dq', 'qc']
+wavelength_column_names = ['wl', 'lam', 'lambda', 'loglam', 'wave', 'wavelength', 'awav', 'log_wave', 'log_wavelength']
+flux_column_names = ['data', 'spec', 'flux', 'flam', 'fnu', 'flux_density', 'reduced_flux', 'calibrated_flux', 'counts']
+error_column_names = ['err', 'sig', 'error', 'err_ivar', 'ivar', 'sigma', 'var', 'err_flux',
+                      'flux_ivar', 'flux_var', 'flux_err', 'uncertainty', 'var_flux', 'flux_sig',
+                      'err_counts', 'counts_err']
+mask_column_names = ['mask', 'qual', 'dq', 'qc', 'qa', 'quality']
 
 # -- These names are used to define proper ImageHDU names for Flux and Error:
 flux_HDU_names = ['FLUX', 'SCI', 'FLAM', 'FNU']

{pynot_redux-2.4.3 → pynot_redux-2.4.5}/pynot/response.py

@@ -764,8 +764,15 @@ def task_response(options, database, status, log=None, verbose=True, app=None, o
             med_flux_tab = gaussian_filter1d(med_flux_tab, 1)
             noise = mad(flux0 - med_flux_tab)*1.5
             good = np.abs(flux0 - med_flux_tab) < options['response']['kappa']*noise
-            # good[:3] = True
-            # good[-3:] = True
+            # Keep the first and last reference points, as `calculate_response()` does.
+            # The criterion above is absolute, while the standard star's count rate varies
+            # by a large factor across the spectrum, and `median_filter` runs along the
+            # *index* axis of the reference table, whose wavelength sampling becomes very
+            # coarse in the far red (the tabulated rows beyond the extracted range are
+            # dropped). Without this, the last points are flagged as outliers and the
+            # response spline extrapolates past them.
+            good[:3] = True
+            good[-3:] = True
 
             # Load Extinction Table:
             wl_ext, A0 = np.loadtxt(instrument.extinction_fname, unpack=True)

pynot_redux-2.4.3/pynot/VERSION

@@ -1 +0,0 @@
-2.4.3