PyNOT-redux 2.4.2__tar.gz → 2.4.4__tar.gz

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Files changed (117) hide show
  1. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PKG-INFO +1 -1
  2. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/PKG-INFO +1 -1
  3. pynot_redux-2.4.4/pynot/VERSION +1 -0
  4. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/fitsio.py +0 -3
  5. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/main.py +1 -0
  6. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/response.py +9 -2
  7. pynot_redux-2.4.2/pynot/VERSION +0 -1
  8. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/.gitattributes +0 -0
  9. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/.github/dependabot.yml +0 -0
  10. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/.gitignore +0 -0
  11. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/LICENSE +0 -0
  12. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/MANIFEST.in +0 -0
  13. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/SOURCES.txt +0 -0
  14. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/dependency_links.txt +0 -0
  15. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/entry_points.txt +0 -0
  16. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/requires.txt +0 -0
  17. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/PyNOT_redux.egg-info/top_level.txt +0 -0
  18. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/README.md +0 -0
  19. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/.extract_msg +0 -0
  20. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/.identify_msg +0 -0
  21. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/.instrument.cfg +0 -0
  22. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/.response_msg +0 -0
  23. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/__init__.py +0 -0
  24. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/alfosc.py +0 -0
  25. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/HeAr_linelist.dat +0 -0
  26. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/HeNe_linelist.dat +0 -0
  27. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/ThAr_linelist.dat +0 -0
  28. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/al-gr18_pixeltable.dat +0 -0
  29. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/al-gr19_pixeltable.dat +0 -0
  30. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/al-gr4_pixeltable.dat +0 -0
  31. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/al-gr7_pixeltable.dat +0 -0
  32. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/alfosc_filters.dat +0 -0
  33. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/default_options.yml +0 -0
  34. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/default_options_img.yml +0 -0
  35. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/ef-gr13_pixeltable.dat +0 -0
  36. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/ef-gr14_pixeltable.dat +0 -0
  37. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/ef-gr1_pixeltable.dat +0 -0
  38. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/ef-gr3_pixeltable.dat +0 -0
  39. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/efosc_filters.dat +0 -0
  40. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/lapalma.ext +0 -0
  41. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/lasilla.ext +0 -0
  42. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/paranal.ext +0 -0
  43. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/bd174708.dat +0 -0
  44. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/bd262606.dat +0 -0
  45. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/bd332642.dat +0 -0
  46. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/bd75325.dat +0 -0
  47. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/eg21.dat +0 -0
  48. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/feige110.dat +0 -0
  49. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/feige34.dat +0 -0
  50. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/gd153.dat +0 -0
  51. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/gd50.dat +0 -0
  52. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/gd71.dat +0 -0
  53. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/hd19445.dat +0 -0
  54. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/hd84937.dat +0 -0
  55. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/hd93521.dat +0 -0
  56. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/he3.dat +0 -0
  57. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/hiltner600.dat +0 -0
  58. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/ltt3864.dat +0 -0
  59. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/tcs_namelist.txt +0 -0
  60. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calib/std/wolf1346.dat +0 -0
  61. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/calibs.py +0 -0
  62. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/__init__.py +0 -0
  63. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/alfosc.rules +0 -0
  64. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/efosc.rules +0 -0
  65. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/help/welcome_msg_extract.html +0 -0
  66. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/help/welcome_msg_identify.html +0 -0
  67. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/help/welcome_msg_response.html +0 -0
  68. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/io.py +0 -0
  69. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/obs.py +0 -0
  70. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/data/organizer.py +0 -0
  71. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/efosc.py +0 -0
  72. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/extract_gui.py +0 -0
  73. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/extraction.py +0 -0
  74. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/functions.py +0 -0
  75. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/identify_gui.py +0 -0
  76. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/images.py +0 -0
  77. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/insconfig.py +0 -0
  78. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/logging.py +0 -0
  79. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/operations.py +0 -0
  80. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/phot.py +0 -0
  81. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/phot_redux.py +0 -0
  82. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/redux.py +0 -0
  83. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/reports.py +0 -0
  84. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/response_gui.py +0 -0
  85. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/scired.py +0 -0
  86. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/scombine.py +0 -0
  87. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/skysub.py +0 -0
  88. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/tasks.py +0 -0
  89. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/transients.py +0 -0
  90. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/txtio.py +0 -0
  91. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/__init__.py +0 -0
  92. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/containers.py +0 -0
  93. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/default_linelists.json +0 -0
  94. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/dust.py +0 -0
  95. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/linelists.py +0 -0
  96. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/messages.py +0 -0
  97. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/models.py +0 -0
  98. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/notes.py +0 -0
  99. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/spectrum.py +0 -0
  100. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/tablemodels.py +0 -0
  101. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/targets.py +0 -0
  102. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/Assef_2010.dat +0 -0
  103. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/FeII.Vestergaard.dat +0 -0
  104. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/FeIII.Vestergaard.dat +0 -0
  105. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/Hernan_Caballero_quasar_NIR_template.txt +0 -0
  106. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/QSO_selsing.dat +0 -0
  107. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/QSO_template.Krawczyk_all.dat +0 -0
  108. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/QSO_template.Krawczyk_high.dat +0 -0
  109. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/templates/QSO_template.Krawczyk_low.dat +0 -0
  110. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/viewer/viewer.py +0 -0
  111. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/wavecal.py +0 -0
  112. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/wcs.py +0 -0
  113. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pynot/welcome.py +0 -0
  114. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/pyproject.toml +0 -0
  115. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/requirements.txt +0 -0
  116. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/setup.cfg +0 -0
  117. {pynot_redux-2.4.2 → pynot_redux-2.4.4}/setup.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
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  Name: PyNOT-redux
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- Version: 2.4.2
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+ Version: 2.4.4
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  Summary: Data Reduction Pipeline for NOT/ALFOSC
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  Home-page: https://github.com/jkrogager/PyNOT
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  Author: Jens-Kristian Krogager
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
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  Name: PyNOT-redux
3
- Version: 2.4.2
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+ Version: 2.4.4
4
4
  Summary: Data Reduction Pipeline for NOT/ALFOSC
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  Home-page: https://github.com/jkrogager/PyNOT
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  Author: Jens-Kristian Krogager
@@ -0,0 +1 @@
1
+ 2.4.4
@@ -3,7 +3,6 @@ __author__ = "Jens-Kristian Krogager"
3
3
 
4
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  import warnings
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  from astropy.io import fits
6
- from astropy import units as u
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6
  from astropy.table import Table
8
7
  import numpy as np
9
8
  import os
@@ -384,8 +383,6 @@ def load_fits_spectrum(fname, ext=None, iraf_obj=None):
384
383
  if has_multi_extensions and (ext is None):
385
384
  msg = "[WARNING] - More than one data extension detected in the file"
386
385
  wavelength, data, error, mask = get_spectrum_fits_table(table_hdu)
387
- if 'CUNIT1' in data_hdr:
388
- wavelength *= u.Unit(data_hdr['CUNIT1'])
389
386
  return wavelength, data, error, mask, data_hdr, msg
390
387
 
391
388
  elif len(HDUlist) == 2:
@@ -1051,6 +1051,7 @@ def main(inspect=False):
1051
1051
 
1052
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  else:
1053
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  import pynot
1054
+ print_credits()
1054
1055
  print("Running PyNOT for instrument: %s\n" % pynot.instrument.name)
1055
1056
 
1056
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  if log:
@@ -764,8 +764,15 @@ def task_response(options, database, status, log=None, verbose=True, app=None, o
764
764
  med_flux_tab = gaussian_filter1d(med_flux_tab, 1)
765
765
  noise = mad(flux0 - med_flux_tab)*1.5
766
766
  good = np.abs(flux0 - med_flux_tab) < options['response']['kappa']*noise
767
- # good[:3] = True
768
- # good[-3:] = True
767
+ # Keep the first and last reference points, as `calculate_response()` does.
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+ # The criterion above is absolute, while the standard star's count rate varies
769
+ # by a large factor across the spectrum, and `median_filter` runs along the
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+ # *index* axis of the reference table, whose wavelength sampling becomes very
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+ # coarse in the far red (the tabulated rows beyond the extracted range are
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+ # dropped). Without this, the last points are flagged as outliers and the
773
+ # response spline extrapolates past them.
774
+ good[:3] = True
775
+ good[-3:] = True
769
776
 
770
777
  # Load Extinction Table:
771
778
  wl_ext, A0 = np.loadtxt(instrument.extinction_fname, unpack=True)
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- 2.4.2
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