PyNOT-redux 2.2.1__tar.gz → 2.2.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (117) hide show
  1. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PKG-INFO +1 -1
  2. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/PKG-INFO +1 -1
  3. pynot_redux-2.2.3/pynot/VERSION +1 -0
  4. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/notes.py +5 -2
  5. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/viewer.py +8 -8
  6. pynot_redux-2.2.1/pynot/VERSION +0 -1
  7. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/.gitattributes +0 -0
  8. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/.github/dependabot.yml +0 -0
  9. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/.gitignore +0 -0
  10. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/LICENSE +0 -0
  11. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/MANIFEST.in +0 -0
  12. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/SOURCES.txt +0 -0
  13. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/dependency_links.txt +0 -0
  14. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/entry_points.txt +0 -0
  15. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/requires.txt +0 -0
  16. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/PyNOT_redux.egg-info/top_level.txt +0 -0
  17. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/README.md +0 -0
  18. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/.extract_msg +0 -0
  19. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/.identify_msg +0 -0
  20. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/.instrument.cfg +0 -0
  21. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/.response_msg +0 -0
  22. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/__init__.py +0 -0
  23. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/alfosc.py +0 -0
  24. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/HeAr_linelist.dat +0 -0
  25. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/HeNe_linelist.dat +0 -0
  26. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/ThAr_linelist.dat +0 -0
  27. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/al-gr18_pixeltable.dat +0 -0
  28. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/al-gr19_pixeltable.dat +0 -0
  29. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/al-gr4_pixeltable.dat +0 -0
  30. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/al-gr7_pixeltable.dat +0 -0
  31. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/alfosc_filters.dat +0 -0
  32. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/default_options.yml +0 -0
  33. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/default_options_img.yml +0 -0
  34. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/ef-gr13_pixeltable.dat +0 -0
  35. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/ef-gr14_pixeltable.dat +0 -0
  36. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/ef-gr1_pixeltable.dat +0 -0
  37. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/ef-gr3_pixeltable.dat +0 -0
  38. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/efosc_filters.dat +0 -0
  39. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/lapalma.ext +0 -0
  40. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/lasilla.ext +0 -0
  41. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/paranal.ext +0 -0
  42. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/bd174708.dat +0 -0
  43. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/bd262606.dat +0 -0
  44. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/bd332642.dat +0 -0
  45. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/bd75325.dat +0 -0
  46. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/eg21.dat +0 -0
  47. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/feige110.dat +0 -0
  48. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/feige34.dat +0 -0
  49. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/gd153.dat +0 -0
  50. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/gd50.dat +0 -0
  51. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/gd71.dat +0 -0
  52. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/hd19445.dat +0 -0
  53. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/hd84937.dat +0 -0
  54. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/hd93521.dat +0 -0
  55. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/he3.dat +0 -0
  56. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/hiltner600.dat +0 -0
  57. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/ltt3864.dat +0 -0
  58. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/tcs_namelist.txt +0 -0
  59. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calib/std/wolf1346.dat +0 -0
  60. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/calibs.py +0 -0
  61. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/__init__.py +0 -0
  62. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/alfosc.rules +0 -0
  63. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/efosc.rules +0 -0
  64. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/help/welcome_msg_extract.html +0 -0
  65. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/help/welcome_msg_identify.html +0 -0
  66. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/help/welcome_msg_response.html +0 -0
  67. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/io.py +0 -0
  68. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/obs.py +0 -0
  69. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/data/organizer.py +0 -0
  70. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/efosc.py +0 -0
  71. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/extract_gui.py +0 -0
  72. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/extraction.py +0 -0
  73. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/fitsio.py +0 -0
  74. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/functions.py +0 -0
  75. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/identify_gui.py +0 -0
  76. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/images.py +0 -0
  77. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/insconfig.py +0 -0
  78. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/logging.py +0 -0
  79. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/main.py +0 -0
  80. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/operations.py +0 -0
  81. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/phot.py +0 -0
  82. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/phot_redux.py +0 -0
  83. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/redux.py +0 -0
  84. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/reports.py +0 -0
  85. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/response.py +0 -0
  86. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/response_gui.py +0 -0
  87. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/scired.py +0 -0
  88. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/scombine.py +0 -0
  89. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/skysub.py +0 -0
  90. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/tasks.py +0 -0
  91. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/transients.py +0 -0
  92. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/txtio.py +0 -0
  93. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/__init__.py +0 -0
  94. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/containers.py +0 -0
  95. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/default_linelists.json +0 -0
  96. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/dust.py +0 -0
  97. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/linelists.py +0 -0
  98. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/messages.py +0 -0
  99. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/models.py +0 -0
  100. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/spectrum.py +0 -0
  101. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/tablemodels.py +0 -0
  102. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/targets.py +0 -0
  103. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/Assef_2010.dat +0 -0
  104. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/FeII.Vestergaard.dat +0 -0
  105. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/FeIII.Vestergaard.dat +0 -0
  106. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/Hernan_Caballero_quasar_NIR_template.txt +0 -0
  107. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/QSO_selsing.dat +0 -0
  108. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/QSO_template.Krawczyk_all.dat +0 -0
  109. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/QSO_template.Krawczyk_high.dat +0 -0
  110. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/viewer/templates/QSO_template.Krawczyk_low.dat +0 -0
  111. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/wavecal.py +0 -0
  112. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/wcs.py +0 -0
  113. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pynot/welcome.py +0 -0
  114. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/pyproject.toml +0 -0
  115. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/requirements.txt +0 -0
  116. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/setup.cfg +0 -0
  117. {pynot_redux-2.2.1 → pynot_redux-2.2.3}/setup.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: PyNOT-redux
3
- Version: 2.2.1
3
+ Version: 2.2.3
4
4
  Summary: Data Reduction Pipeline for NOT/ALFOSC
5
5
  Home-page: https://github.com/jkrogager/PyNOT
6
6
  Author: Jens-Kristian Krogager
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: PyNOT-redux
3
- Version: 2.2.1
3
+ Version: 2.2.3
4
4
  Summary: Data Reduction Pipeline for NOT/ALFOSC
5
5
  Home-page: https://github.com/jkrogager/PyNOT
6
6
  Author: Jens-Kristian Krogager
@@ -0,0 +1 @@
1
+ 2.2.3
@@ -20,6 +20,9 @@ class DataFlag(IntFlag):
20
20
  NARROW_LINE = 2**6 # Spectrum has narrow lines
21
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  PASSIVE_GALAXY = 2**7 # Spectrum is a passive galaxy without emission lines
22
22
  NO_SIGNAL = 2**8 # No identifiable features in the spectrum
23
+ BAL_QSO = 2**9 # Broad absorption line quasar
24
+ ABS_QSO = 2**10 # Absorption associated with quasar
25
+ DLA_INTERVENING = 2**11 # Damped Lyman Alpha absorption
23
26
 
24
27
 
25
28
  def get_flags(self):
@@ -59,7 +62,7 @@ class TargetNote:
59
62
 
60
63
 
61
64
  REDSHIFT_NAMES = ['REDSHIFT', 'Z_SPEC', 'ZBEST', 'Z_PIPE', 'ZSPEC', 'Z', 'ZFIT', 'Z_VI']
62
- ID_NAMES = ['OBJ_NME', 'OBJ_UID', 'SPECUID', 'NAME', 'OBJECT', 'TARGET', 'TARGETID', 'ID', 'UID', 'FILENAME']
65
+ ID_NAMES = ['SPECUID', 'FILENAME', 'PROV', 'OBJ_NME', 'OBJ_UID', 'NAME', 'OBJECT', 'TARGET', 'TARGETID', 'ID', 'UID']
63
66
  CLASS_NAMES = ['TYPE', 'ZBESTTYPE', 'SPECTYPE', 'CLASS', 'CLASSIFICATION', 'OBJ_CLS']
64
67
 
65
68
 
@@ -159,7 +162,7 @@ def redshift_table_lookup(redshift_table, spectrum):
159
162
  """
160
163
  name_column = redshift_table.meta['NAME_COLUMN']
161
164
 
162
- if name_column.upper() == 'FILENAME':
165
+ if name_column.upper() == 'FILENAME' or name_column.upper() == 'PROV':
163
166
  name = spectrum.filename
164
167
 
165
168
  else:
@@ -46,11 +46,11 @@ from pynot.viewer.linelists import LineManagerDialog
46
46
 
47
47
 
48
48
  color_list = cycle([
49
- "#3949AB",
50
- "#D81B60",
51
- "#009688",
52
- "#8E24AA",
53
- "#CCA000",
49
+ # "#3949AB",
50
+ # "#D81B60",
51
+ # "#009688",
52
+ # "#8E24AA",
53
+ # "#CCA000",
54
54
  "#202020",
55
55
  ])
56
56
 
@@ -616,9 +616,9 @@ class MainWindow(QtWidgets.QMainWindow):
616
616
  this_redshift = float(self.z_input.text())
617
617
  target_note.redshift = this_redshift
618
618
 
619
- if DataFlag.CLASS_VI_CONFIRM in target_flag:
620
- logging.warning("Object classification not yet implemented")
621
- # target_note.spectype = ""
619
+ # if DataFlag.CLASS_VI_CONFIRM in target_flag:
620
+ # logging.warning("Object classification not yet implemented")
621
+ # # target_note.spectype = ""
622
622
 
623
623
  self.target_notes[target.name] = target_note
624
624
  self.write_notes(self.notes_backup_filename, backup=True)
@@ -1 +0,0 @@
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- 2.2.1
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