PyGHGaq 0.0.1__tar.gz

pyghgaq-0.0.1/LICENCE

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+Copyright (c) 2018 The Python Packaging Authority
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

pyghgaq-0.0.1/PKG-INFO

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+Metadata-Version: 2.4
+Name: PyGHGaq
+Version: 0.0.1
+Summary: A package to calculate GHG emissions from aquatic ecosystems
+Author-email: César Ordóñez <cesar.ordonez@unige.ch>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/ceordonez/PyGHGaq
+Project-URL: Issues, https://github.com/ceordonez/PyGHGaq/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENCE
+Requires-Dist: pandas>=2.3.3
+Requires-Dist: numpy>=2.3.4
+Dynamic: license-file
+
+# PyGHGaq 
+
+This package contains different methods and properties to estimate GHG ($\text{CH}_4$ and $\text{CO}_2$) emissions and concentrations for aquatic ecosystems
+
+## Installation
+pip install pyghgaq
+
+## Usage
+
+```python
+import pyghgaq
+
+cw = np.random(20)
+csat = np.random(20)
+k = np.random(20)
+flux = pyghgaq.atm_diff_flux(cw, csat, k)
+```
+
+## IMPORTANT
+THIS PACKAGE IS STILL IN DEVELOPMENT

pyghgaq-0.0.1/README.md

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+# PyGHGaq 
+
+This package contains different methods and properties to estimate GHG ($\text{CH}_4$ and $\text{CO}_2$) emissions and concentrations for aquatic ecosystems
+
+## Installation
+pip install pyghgaq
+
+## Usage
+
+```python
+import pyghgaq
+
+cw = np.random(20)
+csat = np.random(20)
+k = np.random(20)
+flux = pyghgaq.atm_diff_flux(cw, csat, k)
+```
+
+## IMPORTANT
+THIS PACKAGE IS STILL IN DEVELOPMENT

pyghgaq-0.0.1/pyproject.toml

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+[build-system]
+requires = ["setuptools >= 77.0.3"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "PyGHGaq"
+version = "0.0.1"
+authors = [
+  { name="César Ordóñez", email="cesar.ordonez@unige.ch" },
+]
+description = "A package to calculate GHG emissions from aquatic ecosystems"
+readme = "README.md"
+requires-python = ">=3.12"
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "Operating System :: OS Independent",
+]
+license = "MIT"
+license-files = ["LICEN[CS]E*"]
+dependencies = ["pandas>=2.3.3", "numpy>=2.3.4"]
+
+[project.urls]
+Homepage = "https://github.com/ceordonez/PyGHGaq"
+Issues = "https://github.com/ceordonez/PyGHGaq/issues"

pyghgaq-0.0.1/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

pyghgaq-0.0.1/src/PyGHGaq/PyGHGaq.py

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+import numpy as np
+import pandas as pd
+
+
+def csat(
+    atmpress_hpa: np.ndarray, catm_ppm: np.ndarray, hcp_molm3pa: np.ndarray
+) -> np.ndarray:
+    """
+    Return
+    -------
+    Concentration of saturation in mmolm3
+    """
+    return atmpress_hpa * catm_ppm * hcp_molm3pa * 1e-2
+
+
+def atm_dif_flux(
+    csat_mmolm3: np.ndarray, cw_mmolm3: np.ndarray, k_md: np.ndarray
+) -> np.ndarray:
+    """
+    Returns
+    -------
+    Diffusive flux to/from the atmosphere in mmolm2d
+    """
+    return k_md * (cw_mmolm3 - csat_mmolm3)
+
+
+def hcp(
+    varname: str,
+    temp_c: pd.Series,
+    sal_psu: pd.Series,
+    catm_ppm: pd.Series,
+    constant: dict,
+    coeff: int = 1,
+) -> pd.Series:
+    """Calculate Henry's Coefficient
+
+    Parameters
+    ----------
+    varname : string
+        Could be ch4 or co2
+    temp_c : pandas.Series
+        Temperature of equilibrium.
+    sal_psu : pandas.Series
+        Water salinity in PSU
+    constant : dict
+        Constant data (defined in utils/constant.yml).
+    coeff : float
+        0 Use Sanders 2015 - Only consider correction by temperature (Use this for freshwaters).
+        1 Use Wiss 1974 to estimate Henry's Coefficient for CO2 and Wiesenburg & Guinasso 1979 for CH4, considering Salinity and Temperature coerrections (default).
+
+    Returns
+    -------
+    hcp_t : float
+            Henry's coefficient for CH4 or CO2 in mmolm-3Pa-1
+    """
+
+    if coeff == 0:
+        if varname == "ch4":
+            hcp25 = constant["H_CH4_T25"]
+            dlnHcpd1_T = constant["dlnH_CH4_d1T"]
+        elif varname == "co2":
+            hcp25 = constant["H_CO2_T25"]
+            dlnHcpd1_T = constant["dlnH_CO2_d1T"]
+        hcp_t = hcp25 * np.exp(dlnHcpd1_T * (1 / (temp_c + 273.15) - 1 / 298.15))
+        return hcp_t
+
+    elif coeff == 1:
+        hcp_t = hcp_sal(varname, sal_psu, temp_c, catm_ppm)
+        return hcp_t
+    else:
+        ## CHANGE TO RAISE AN ERROR
+        return None
+
+
+def hcp_sal(
+    var: str, sal_psu: pd.Series, temp_c: pd.Series, catm_ppm: pd.Series
+) -> pd.Series:
+    """Correct Henrys coefficient for CO2 (Weiss 1974) and CH4 (Wiesenburg and Guinasso 1979) considering salnity and temperature corrections.
+
+    Parameters
+    ----------
+    var : string.
+        Variable name (ch4, co2).
+    sal_psu : pandas.Series or float.
+        Salinity in PSU.
+    temp_c : pandas.Series or float.
+        Water temperature in deg C.
+
+    Returns
+    -------
+    hcpsalt_mmolm3Pa : list
+        Henry's coefficient estimated considering salinity and temperature corrections [molm-3Pa-1]
+    """
+    temp_k = temp_c + 273.15
+    fx = catm_ppm * 1e-6
+    if var == "co2":  # folowing Weiss 1974
+        A = [-58.0931, 90.5069, 22.2940]
+        B = [0.027766, -0.025888, 0.0050578]
+        hcpsalt_molm3Pa = (
+            np.exp(
+                +A[0]
+                + A[1] * 100 / temp_k
+                + A[2] * np.log(temp_k / 100)
+                + sal_psu * (B[0] + B[1] * temp_k / 100 + B[2] * (temp_k / 100) ** 2)
+            )
+            * 1000
+            / 101325
+        )
+    elif var == "ch4":  # folowing Wiesenburg and Guinasso 1979
+        # A = [-417.5053, 599.8626, 380.3636, -62.0764]
+        A = [-415.2807, 596.8104, 379.2599, -62.0757]
+        B = [-0.05916, 0.032174, -0.0048198]
+
+        c_molm3 = (
+            np.exp(
+                +np.log(fx)
+                + A[0]
+                + A[1] * 100 / temp_k
+                + A[2] * np.log(temp_k / 100)
+                + A[3] * (temp_k / 100)
+                + sal_psu * (B[0] + B[1] * temp_k / 100 + B[2] * (temp_k / 100) ** 2)
+            )
+            * 1000
+            / 1e9
+        )
+        hcpsalt_molm3Pa = c_molm3 / (101325 * fx)
+    return hcpsalt_molm3Pa
+

pyghgaq-0.0.1/src/PyGHGaq.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: PyGHGaq
+Version: 0.0.1
+Summary: A package to calculate GHG emissions from aquatic ecosystems
+Author-email: César Ordóñez <cesar.ordonez@unige.ch>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/ceordonez/PyGHGaq
+Project-URL: Issues, https://github.com/ceordonez/PyGHGaq/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+License-File: LICENCE
+Requires-Dist: pandas>=2.3.3
+Requires-Dist: numpy>=2.3.4
+Dynamic: license-file
+
+# PyGHGaq 
+
+This package contains different methods and properties to estimate GHG ($\text{CH}_4$ and $\text{CO}_2$) emissions and concentrations for aquatic ecosystems
+
+## Installation
+pip install pyghgaq
+
+## Usage
+
+```python
+import pyghgaq
+
+cw = np.random(20)
+csat = np.random(20)
+k = np.random(20)
+flux = pyghgaq.atm_diff_flux(cw, csat, k)
+```
+
+## IMPORTANT
+THIS PACKAGE IS STILL IN DEVELOPMENT

pyghgaq-0.0.1/src/PyGHGaq.egg-info/SOURCES.txt

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+LICENCE
+README.md
+pyproject.toml
+src/PyGHGaq/PyGHGaq.py
+src/PyGHGaq/__init__.py
+src/PyGHGaq.egg-info/PKG-INFO
+src/PyGHGaq.egg-info/SOURCES.txt
+src/PyGHGaq.egg-info/dependency_links.txt
+src/PyGHGaq.egg-info/requires.txt
+src/PyGHGaq.egg-info/top_level.txt

pyghgaq-0.0.1/src/PyGHGaq.egg-info/dependency_links.txt

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+

pyghgaq-0.0.1/src/PyGHGaq.egg-info/requires.txt

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+pandas>=2.3.3
+numpy>=2.3.4

pyghgaq-0.0.1/src/PyGHGaq.egg-info/top_level.txt

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+PyGHGaq