PyDTMC 8.7.0__tar.gz → 9.0.0__tar.gz

{PyDTMC-8.7.0 → pydtmc-9.0.0}/LICENSE.md

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2019-2024 Tommaso Belluzzo
+Copyright (c) 2019-2026 Tommaso Belluzzo
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

{PyDTMC-8.7.0 → pydtmc-9.0.0}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: PyDTMC
-Version: 8.7.0
+Version: 9.0.0
 Summary: A full-featured and lightweight library for discrete-time Markov chains analysis.
 Home-page: https://github.com/TommasoBelluzzo/PyDTMC
 Author: Tommaso Belluzzo
@@ -18,11 +18,9 @@ Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Intended Audience :: Education
 Classifier: Intended Audience :: Financial and Insurance Industry
 Classifier: Intended Audience :: Science/Research
@@ -32,14 +30,40 @@ Classifier: Topic :: Office/Business
 Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Text Processing
 Classifier: Topic :: Other/Nonlisted Topic
-Requires-Python: >=3.8
+Requires-Python: >=3.12
 Description-Content-Type: text/markdown
+License-File: LICENSE.md
+Requires-Dist: matplotlib>=3.10
+Requires-Dist: networkx
+Requires-Dist: numpy
+Requires-Dist: scipy
 Provides-Extra: build
+Requires-Dist: setuptools; extra == "build"
+Requires-Dist: wheel; extra == "build"
+Requires-Dist: twine; extra == "build"
 Provides-Extra: docs
+Requires-Dist: docutils<0.21,>=0.18.1; extra == "docs"
+Requires-Dist: typing-extensions; extra == "docs"
+Requires-Dist: sphinx<=7.1.2; extra == "docs"
+Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
+Requires-Dist: sphinx-rtd-theme; extra == "docs"
 Provides-Extra: lint
+Requires-Dist: flake8; extra == "lint"
+Requires-Dist: pylint; extra == "lint"
 Provides-Extra: package
+Requires-Dist: defusedxml; extra == "package"
+Requires-Dist: numpydoc; extra == "package"
+Requires-Dist: pandas; extra == "package"
+Requires-Dist: pydot; extra == "package"
 Provides-Extra: tests
-License-File: LICENSE.md
+Requires-Dist: coverage; extra == "tests"
+Requires-Dist: pytest; extra == "tests"
+Requires-Dist: pytest-benchmark; extra == "tests"
+Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: coveralls; extra == "tests"
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: license-file
 
 PyDTMC is a full-featured and lightweight library for discrete-time Markov chains analysis. It provides classes and functions for creating, manipulating, simulating and visualizing Markov processes.
 

{PyDTMC-8.7.0 → pydtmc-9.0.0}/PyDTMC.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: PyDTMC
-Version: 8.7.0
+Version: 9.0.0
 Summary: A full-featured and lightweight library for discrete-time Markov chains analysis.
 Home-page: https://github.com/TommasoBelluzzo/PyDTMC
 Author: Tommaso Belluzzo
@@ -18,11 +18,9 @@ Classifier: Natural Language :: English
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Intended Audience :: Education
 Classifier: Intended Audience :: Financial and Insurance Industry
 Classifier: Intended Audience :: Science/Research
@@ -32,14 +30,40 @@ Classifier: Topic :: Office/Business
 Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Text Processing
 Classifier: Topic :: Other/Nonlisted Topic
-Requires-Python: >=3.8
+Requires-Python: >=3.12
 Description-Content-Type: text/markdown
+License-File: LICENSE.md
+Requires-Dist: matplotlib>=3.10
+Requires-Dist: networkx
+Requires-Dist: numpy
+Requires-Dist: scipy
 Provides-Extra: build
+Requires-Dist: setuptools; extra == "build"
+Requires-Dist: wheel; extra == "build"
+Requires-Dist: twine; extra == "build"
 Provides-Extra: docs
+Requires-Dist: docutils<0.21,>=0.18.1; extra == "docs"
+Requires-Dist: typing-extensions; extra == "docs"
+Requires-Dist: sphinx<=7.1.2; extra == "docs"
+Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
+Requires-Dist: sphinx-rtd-theme; extra == "docs"
 Provides-Extra: lint
+Requires-Dist: flake8; extra == "lint"
+Requires-Dist: pylint; extra == "lint"
 Provides-Extra: package
+Requires-Dist: defusedxml; extra == "package"
+Requires-Dist: numpydoc; extra == "package"
+Requires-Dist: pandas; extra == "package"
+Requires-Dist: pydot; extra == "package"
 Provides-Extra: tests
-License-File: LICENSE.md
+Requires-Dist: coverage; extra == "tests"
+Requires-Dist: pytest; extra == "tests"
+Requires-Dist: pytest-benchmark; extra == "tests"
+Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: coveralls; extra == "tests"
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: license-file
 
 PyDTMC is a full-featured and lightweight library for discrete-time Markov chains analysis. It provides classes and functions for creating, manipulating, simulating and visualizing Markov processes.
 

{PyDTMC-8.7.0 → pydtmc-9.0.0}/PyDTMC.egg-info/requires.txt

@@ -1,4 +1,4 @@
-matplotlib<=3.7.3
+matplotlib>=3.10
 networkx
 numpy
 scipy
@@ -9,7 +9,7 @@ wheel
 twine
 
 [docs]
-docutils
+docutils<0.21,>=0.18.1
 typing-extensions
 sphinx<=7.1.2
 sphinx-autodoc-typehints

{PyDTMC-8.7.0 → pydtmc-9.0.0}/pydtmc/__init__.py

@@ -1,7 +1,7 @@
 # -*- coding: utf-8 -*-
 
 __title__ = 'PyDTMC'
-__version__ = '8.7.0'
+__version__ = '9.0.0'
 __author__ = 'Tommaso Belluzzo'
 
 __all__ = [

{PyDTMC-8.7.0 → pydtmc-9.0.0}/pydtmc/markov_chain.py

@@ -632,19 +632,12 @@ class MarkovChain(_Model):
 
     @_cached_property
     def is_aperiodic(self) -> bool:
-
         """
         A property indicating whether the Markov chain is aperiodic.
         """
-
         if self.is_irreducible:
-            result = set(self.periods).pop() == 1
-        elif all(period == 1 for period in self.periods):
-            result = True
-        else:  # pragma: no cover
-            result = _nx.is_aperiodic(self.__digraph)
-
-        return result
+            return set(self.periods).pop() == 1
+        return all(period == 1 for period in self.periods)
 
     @_cached_property
     def is_canonical(self) -> bool:
@@ -1618,7 +1611,7 @@ class MarkovChain(_Model):
     @_object_mark(instance_generator=True)
     def merge_with(self, other: _tmc, gamma: float) -> _tmc:
 
-        """
+        r"""
         The method returns a Markov chain whose transition matrix is defined below.
 
         | :math:`p_{new} = (1 - \gamma) p_{current} + \gamma p_{other}`

{PyDTMC-8.7.0 → pydtmc-9.0.0}/pydtmc/plotting.py

@@ -291,7 +291,7 @@ def plot_eigenvalues(model: _tmodel, dpi: int = 100) -> _oplot:
                 z_spectral_gap = x_spectral_gap**2.0 + y_spectral_gap**2.0
 
                 h = ax.contourf(x_spectral_gap, y_spectral_gap, z_spectral_gap, alpha=0.2, colors='r', levels=[mu**2.0, 1.0])
-                handles.append(_mplp.Rectangle((0.0, 0.0), 1.0, 1.0, fc=h.collections[0].get_facecolor()[0]))
+                handles.append(_mplp.Rectangle((0.0, 0.0), 1.0, 1.0, fc=h.get_facecolor()[0]))
                 labels.append('Spectral Gap')
 
                 ax.plot(x_slem_circle, y_slem_circle, color='red', linestyle='--', linewidth=1.5)
@@ -1420,7 +1420,7 @@ def plot_trellis(hmm: _thmm, steps: int, initial_state: _ostate = None, seed: _o
 
             node_index += 1
 
-        headers = ["$\mathregular{T_0}$"] + [hmm.symbols[symbol] for symbol in gts_symbols[1:]]
+        headers = [r"$\mathregular{T_0}$"] + [hmm.symbols[symbol] for symbol in gts_symbols[1:]]
 
         for col, header in enumerate(headers):
 

{PyDTMC-8.7.0 → pydtmc-9.0.0}/pydtmc/utilities.py

@@ -171,7 +171,7 @@ def create_models_names(models: _tlist_model) -> _tlist_str:
     else:
         models_label = 'MODEL'
 
-    models_names = [f'$\mathregular{{{models_label}_{index + 1}}}$' for index, model in enumerate(models)]
+    models_names = [fr'$\mathregular{{{models_label}_{index + 1}}}$' for index, model in enumerate(models)]
 
     return models_names
 

{PyDTMC-8.7.0 → pydtmc-9.0.0}/setup.cfg

@@ -20,11 +20,9 @@ classifiers =
 	Operating System :: OS Independent
 	Programming Language :: Python :: 3
 	Programming Language :: Python :: 3 :: Only
-	Programming Language :: Python :: 3.8
-	Programming Language :: Python :: 3.9
-	Programming Language :: Python :: 3.10
-	Programming Language :: Python :: 3.11
 	Programming Language :: Python :: 3.12
+	Programming Language :: Python :: 3.13
+	Programming Language :: Python :: 3.14
 	Intended Audience :: Education
 	Intended Audience :: Financial and Insurance Industry
 	Intended Audience :: Science/Research
@@ -53,11 +51,11 @@ keywords =
 	simulation
 
 [options]
-python_requires = >=3.8
+python_requires = >=3.12
 setup_requires = 
 	setuptools
 install_requires = 
-	matplotlib<=3.7.3
+	matplotlib>=3.10
 	networkx
 	numpy
 	scipy
@@ -68,7 +66,7 @@ build =
 	wheel
 	twine
 docs = 
-	docutils
+	docutils>=0.18.1,<0.21
 	typing-extensions
 	sphinx<=7.1.2
 	sphinx-autodoc-typehints
@@ -97,7 +95,7 @@ omit =
 	docs/*
 	tests/*
 	pydtmc/__init__.py
-	pydtmc/base_class.py
+	pydtmc/base_classes.py
 	pydtmc/custom_types.py
 	pydtmc/decorators.py
 	pydtmc/exceptions.py
@@ -141,6 +139,7 @@ disable =
 	R0913,
 	R0914,
 	R0915,
+	R0917,
 	R1702,
 	W0107,
 	W0123,

{PyDTMC-8.7.0 → pydtmc-9.0.0}/setup.py

@@ -21,8 +21,8 @@ import setuptools as _st
 # PYTHON CHECK #
 ################
 
-if _sys.version_info < (3, 8):
-    _sys.exit('Python 3.8 or greater is required.')
+if _sys.version_info < (3, 12):
+    _sys.exit('Python 3.12 or greater is required.')
 
 #################
 # DYNAMIC SETUP #

{PyDTMC-8.7.0 → pydtmc-9.0.0}/tests/conftest.py

@@ -206,7 +206,7 @@ def pytest_configure(config):
     config.addinivalue_line('filterwarnings', 'ignore::PendingDeprecationWarning')
 
     try:
-        if _hasattr_deep(_mpl, 'cbook',  'mplDeprecation'):
+        if _hasattr_deep(_mpl, 'cbook', 'mplDeprecation'):
             config.addinivalue_line('filterwarnings', 'ignore::matplotlib.cbook.mplDeprecation')
     except Exception:
         pass

{PyDTMC-8.7.0 → pydtmc-9.0.0}/tests/fixtures/fixtures_aliases.json

@@ -1,96 +1,96 @@
-{
-  "aliased_methods_data": [
-    {
-      "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
-      "params": {
-        "committor_probabilities": ["backward", 0, 1],
-        "conditional_probabilities": [1],
-        "expected_rewards": [4, [-2.0, -0.7, -8.0]],
-        "expected_transitions": [6, null],
-        "first_passage_probabilities": [3, 1, null],
-        "first_passage_reward": [21, 1, 0, [-4.4, 7.5, 4.8]],
-        "hitting_probabilities": [null],
-        "hitting_times": [null],
-        "mean_absorption_times": null,
-        "mean_first_passage_times_between": [0, 2],
-        "mean_first_passage_times_to": null,
-        "mean_number_visits": null,
-        "mean_recurrence_times": null,
-        "mixing_time": [null, 3, "natural"],
-        "next_state": [1, false, 7331],
-        "time_correlations": [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], null, [1, 10, 100]],
-        "time_relaxations": [[0, 1, 1, 1, 1, 0], null, [1, 10, 100]],
-        "to_bounded_chain": ["absorbing"],
-        "to_canonical_form": null,
-        "to_lazy_chain": [0.6],
-        "to_nth_order": [3],
-        "to_subchain": [[1, 2]]
-      }
-    },
-    {
-      "p": [[0.70, 0.15, 0.15], [0.15, 0.70, 0.15], [0.15, 0.15, 0.70]],
-      "params": {
-        "committor_probabilities": ["backward", 0, 2],
-        "conditional_probabilities": [0],
-        "expected_rewards": [12, [1.4, 0.0, -6.1]],
-        "expected_transitions": [32, [0.1, 0.45, 0.45]],
-        "first_passage_probabilities": [7, 0, [1, 2]],
-        "first_passage_reward": [18, 1, 2, [-1.9, 8.9, 0.0]],
-        "hitting_probabilities": [null],
-        "hitting_times": [null],
-        "mean_absorption_times": null,
-        "mean_first_passage_times_between": [0, 1],
-        "mean_first_passage_times_to": null,
-        "mean_number_visits": null,
-        "mean_recurrence_times": null,
-        "mixing_time": [null, 12, "traditional"],
-        "next_state": [1, false, 7331],
-        "time_correlations": [[0, 0, 0, 1, 2, 2, 2, 2, 2], null, 50],
-        "time_relaxations": [[0, 1, 1, 1, 1, 0], null, 50],
-        "to_bounded_chain": ["reflecting"],
-        "to_canonical_form": null,
-        "to_lazy_chain": [[0.1, 0.2, 0.1]],
-        "to_nth_order": [6],
-        "to_subchain": [[0, 2]]
-      }
-    }    ,
-    {
-      "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.1, 0.8, 0.0, 0.1, 0.0, 0.0], [0.3, 0.0, 0.3, 0.2, 0.2, 0.0], [0.5, 0.0, 0.0, 0.0, 0.0, 0.5], [0.2, 0.2, 0.2, 0.0, 0.2, 0.2], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0]],
-      "params": {
-        "committor_probabilities": ["forward", 3, 5],
-        "conditional_probabilities": [4],
-        "expected_rewards": [1, [-0.4, 0.0, -3.9, 2.1, 3.6, 0.0]],
-        "expected_transitions": [9, null],
-        "first_passage_probabilities": [3, 0, [1, 2, 5]],
-        "first_passage_reward": [12, 0, [1, 4], [2.3, 3.2, 0.0, 2.1, 5.5, -9.2]],
-        "hitting_probabilities": [[2, 3]],
-        "hitting_times": [[0, 1, 2]],
-        "mean_absorption_times": null,
-        "mean_first_passage_times_between": [[0, 2], [1, 3]],
-        "mean_first_passage_times_to": [[0, 3, 4]],
-        "mean_number_visits": null,
-        "mean_recurrence_times": null,
-        "next_state": [1, false, 7331],
-        "mixing_time": [[0.4, 0.0, 0.2, 0.2, 0.2, 0.0], 5, "natural"],
-        "time_correlations": [[0, 1, 1, 1, 1, 0], [2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1], [0, 1, 2, 3, 4, 5]],
-        "time_relaxations": [[0, 1, 1, 1, 1, 0], [0.0, 0.0, 0.8, 0.0, 0.0, 0.2], [0, 1, 2, 3, 4, 5]],
-        "to_bounded_chain": [0.75],
-        "to_canonical_form": null,
-        "to_lazy_chain": [0.1],
-        "to_nth_order": [2],
-        "to_subchain": [[1, 2, 3]]
-      }
-    }
-  ],
-  "aliased_properties_data": [
-    {
-      "p": [[1.0, 0.0], [0.0, 1.0]]
-    },
-    {
-      "p": [[0.0, 0.0, 1.0], [0.15, 0.70, 0.15], [0.0, 0.0, 1.0]]
-    }    ,
-    {
-      "p": [[0.3, 0.4, 0.3], [0.6, 0.2, 0.2], [0.2, 0.7, 0.1]]
-    }
-  ]
+{
+  "aliased_methods_data": [
+    {
+      "p": [[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]],
+      "params": {
+        "committor_probabilities": ["backward", 0, 1],
+        "conditional_probabilities": [1],
+        "expected_rewards": [4, [-2.0, -0.7, -8.0]],
+        "expected_transitions": [6, null],
+        "first_passage_probabilities": [3, 1, null],
+        "first_passage_reward": [21, 1, 0, [-4.4, 7.5, 4.8]],
+        "hitting_probabilities": [null],
+        "hitting_times": [null],
+        "mean_absorption_times": null,
+        "mean_first_passage_times_between": [0, 2],
+        "mean_first_passage_times_to": null,
+        "mean_number_visits": null,
+        "mean_recurrence_times": null,
+        "mixing_time": [null, 3, "natural"],
+        "next_state": [1, false, 7331],
+        "time_correlations": [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], null, [1, 10, 100]],
+        "time_relaxations": [[0, 1, 1, 1, 1, 0], null, [1, 10, 100]],
+        "to_bounded_chain": ["absorbing"],
+        "to_canonical_form": null,
+        "to_lazy_chain": [0.6],
+        "to_nth_order": [3],
+        "to_subchain": [[1, 2]]
+      }
+    },
+    {
+      "p": [[0.70, 0.15, 0.15], [0.15, 0.70, 0.15], [0.15, 0.15, 0.70]],
+      "params": {
+        "committor_probabilities": ["backward", 0, 2],
+        "conditional_probabilities": [0],
+        "expected_rewards": [12, [1.4, 0.0, -6.1]],
+        "expected_transitions": [32, [0.1, 0.45, 0.45]],
+        "first_passage_probabilities": [7, 0, [1, 2]],
+        "first_passage_reward": [18, 1, 2, [-1.9, 8.9, 0.0]],
+        "hitting_probabilities": [null],
+        "hitting_times": [null],
+        "mean_absorption_times": null,
+        "mean_first_passage_times_between": [0, 1],
+        "mean_first_passage_times_to": null,
+        "mean_number_visits": null,
+        "mean_recurrence_times": null,
+        "mixing_time": [null, 12, "traditional"],
+        "next_state": [1, false, 7331],
+        "time_correlations": [[0, 0, 0, 1, 2, 2, 2, 2, 2], null, 50],
+        "time_relaxations": [[0, 1, 1, 1, 1, 0], null, 50],
+        "to_bounded_chain": ["reflecting"],
+        "to_canonical_form": null,
+        "to_lazy_chain": [[0.1, 0.2, 0.1]],
+        "to_nth_order": [6],
+        "to_subchain": [[0, 2]]
+      }
+    }    ,
+    {
+      "p": [[0.0, 1.0, 0.0, 0.0, 0.0, 0.0], [0.1, 0.8, 0.0, 0.1, 0.0, 0.0], [0.3, 0.0, 0.3, 0.2, 0.2, 0.0], [0.5, 0.0, 0.0, 0.0, 0.0, 0.5], [0.2, 0.2, 0.2, 0.0, 0.2, 0.2], [0.0, 0.0, 0.0, 0.0, 0.0, 1.0]],
+      "params": {
+        "committor_probabilities": ["forward", 3, 5],
+        "conditional_probabilities": [4],
+        "expected_rewards": [1, [-0.4, 0.0, -3.9, 2.1, 3.6, 0.0]],
+        "expected_transitions": [9, null],
+        "first_passage_probabilities": [3, 0, [1, 2, 5]],
+        "first_passage_reward": [12, 0, [1, 4], [2.3, 3.2, 0.0, 2.1, 5.5, -9.2]],
+        "hitting_probabilities": [[2, 3]],
+        "hitting_times": [[0, 1, 2]],
+        "mean_absorption_times": null,
+        "mean_first_passage_times_between": [[0, 2], [1, 3]],
+        "mean_first_passage_times_to": [[0, 3, 4]],
+        "mean_number_visits": null,
+        "mean_recurrence_times": null,
+        "next_state": [1, false, 7331],
+        "mixing_time": [[0.4, 0.0, 0.2, 0.2, 0.2, 0.0], 5, "natural"],
+        "time_correlations": [[0, 1, 1, 1, 1, 0], [2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1], [0, 1, 2, 3, 4, 5]],
+        "time_relaxations": [[0, 1, 1, 1, 1, 0], [0.0, 0.0, 0.8, 0.0, 0.0, 0.2], [0, 1, 2, 3, 4, 5]],
+        "to_bounded_chain": [0.75],
+        "to_canonical_form": null,
+        "to_lazy_chain": [0.1],
+        "to_nth_order": [2],
+        "to_subchain": [[1, 2, 3]]
+      }
+    }
+  ],
+  "aliased_properties_data": [
+    {
+      "p": [[1.0, 0.0], [0.0, 1.0]]
+    },
+    {
+      "p": [[0.0, 0.0, 1.0], [0.15, 0.70, 0.15], [0.0, 0.0, 1.0]]
+    }    ,
+    {
+      "p": [[0.3, 0.4, 0.3], [0.6, 0.2, 0.2], [0.2, 0.7, 0.1]]
+    }
+  ]
 }