PyCosmoMMF 1.0.1__tar.gz → 1.0.3__tar.gz

{pycosmommf-1.0.1 → pycosmommf-1.0.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pycosmommf
-Version: 1.0.1
+Version: 1.0.3
 Summary: A package for identifying structures in the cosmic web.
 Project-URL: Homepage, https://github.com/James11222/pycosmommf
 Project-URL: Bug Tracker, https://github.com/James11222/pycosmommf/issues

{pycosmommf-1.0.1 → pycosmommf-1.0.3}/src/pycosmommf/_version.py

@@ -1,7 +1,14 @@
 # file generated by setuptools-scm
 # don't change, don't track in version control
 
-__all__ = ["__version__", "__version_tuple__", "version", "version_tuple"]
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
 
 TYPE_CHECKING = False
 if TYPE_CHECKING:
@@ -9,13 +16,19 @@ if TYPE_CHECKING:
     from typing import Union
 
     VERSION_TUPLE = Tuple[Union[int, str], ...]
+    COMMIT_ID = Union[str, None]
 else:
     VERSION_TUPLE = object
+    COMMIT_ID = object
 
 version: str
 __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
+commit_id: COMMIT_ID
+__commit_id__: COMMIT_ID
 
-__version__ = version = '1.0.1'
-__version_tuple__ = version_tuple = (1, 0, 1)
+__version__ = version = '1.0.3'
+__version_tuple__ = version_tuple = (1, 0, 3)
+
+__commit_id__ = commit_id = None

{pycosmommf-1.0.1 → pycosmommf-1.0.3}/src/pycosmommf/signatures.py

@@ -78,7 +78,7 @@ def signatures_from_hessian(hessian):  # pragma: no cover
     return sigs
 
 
-def maximum_signature(Rs, density_cube, algorithm="NEXUSPLUS", eps=1e-8):
+def maximum_signature(Rs, density_cube, algorithm="NEXUSPLUS", eps=1e-16):
     """
     Compute the maximum signatures across all scales Rs.
 
@@ -90,7 +90,7 @@ def maximum_signature(Rs, density_cube, algorithm="NEXUSPLUS", eps=1e-8):
         algorithm (:obj:`str`, optional):
             The algorithm to use for smoothing. Can be either "NEXUS" or "NEXUSPLUS". Defaults to "NEXUSPLUS".
         eps (:obj:`float`, optional):
-            Small value to avoid division by zero. Defaults to ``1e-8``.
+            Small value to avoid division by zero. Defaults to ``1e-16``.
 
     Returns:
         (:obj:`4D float np.ndarray`):

{pycosmommf-1.0.1 → pycosmommf-1.0.3}/src/pycosmommf/tagging.py

@@ -167,14 +167,14 @@ def calc_structure_bools(
         msg = "make sure that you are not inputing the overdensity field δ = ρ/<ρ> - 1, but rather δ + 1 = ρ/<ρ>."
         raise ValueError(msg)
 
-    # Check if the input density_cube is actually δ + 1 = ρ/<ρ> or just ρ
-    if np.mean(density_cube) > 1.0:
-        # If the mean is greater than 1, we assume it is simply ρ, but we want to transform to δ + 1 = ρ/<ρ>
-        if verbose_flag:  # pragma: no cover
-            print(
-                "Input density_cube is in density units, transforming to δ + 1 = ρ/<ρ>."
-            )
-        density_cube /= np.mean(density_cube)  # normalize to mean = 1
+    # # Check if the input density_cube is actually δ + 1 = ρ/<ρ> or just ρ
+    # if np.mean(density_cube) != 1.0:
+    #     # If the mean is greater than 1, we assume it is simply ρ, but we want to transform to δ + 1 = ρ/<ρ>
+    #     if verbose_flag:  # pragma: no cover
+    #         print(
+    #             "Input density_cube is in density units, transforming to δ + 1 = ρ/<ρ>."
+    #         )
+    #     density_cube /= np.mean(density_cube)  # normalize to mean = 1
 
     # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     #                 Step 1. Create Cluster bool Filter