PyCosmoMMF 1.0.1__tar.gz → 1.0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/PKG-INFO +1 -1
  2. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/_version.py +2 -2
  3. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/tagging.py +8 -8
  4. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.copier-answers.yml +0 -0
  5. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.git_archival.txt +0 -0
  6. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.gitattributes +0 -0
  7. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.github/CONTRIBUTING.md +0 -0
  8. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.github/dependabot.yml +0 -0
  9. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.github/release.yml +0 -0
  10. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.github/workflows/cd.yml +0 -0
  11. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.github/workflows/ci.yml +0 -0
  12. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.gitignore +0 -0
  13. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.pre-commit-config.yaml +0 -0
  14. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/.readthedocs.yaml +0 -0
  15. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/LICENSE +0 -0
  16. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/README.md +0 -0
  17. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/CosmoMMF_Dark.png +0 -0
  18. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/CosmoMMF_light.png +0 -0
  19. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/basic.css +0 -0
  20. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/check-solid.svg +0 -0
  21. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/clipboard.min.js +0 -0
  22. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/copy-button.svg +0 -0
  23. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/copybutton.css +0 -0
  24. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/copybutton.js +0 -0
  25. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/copybutton_funcs.js +0 -0
  26. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/debug.css +0 -0
  27. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/doctools.js +0 -0
  28. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/documentation_options.js +0 -0
  29. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/file.png +0 -0
  30. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/language_data.js +0 -0
  31. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/minus.png +0 -0
  32. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/plus.png +0 -0
  33. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/pygments.css +0 -0
  34. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/scripts/furo-extensions.js +0 -0
  35. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/scripts/furo.js +0 -0
  36. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/scripts/furo.js.LICENSE.txt +0 -0
  37. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/scripts/furo.js.map +0 -0
  38. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/searchtools.js +0 -0
  39. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/skeleton.css +0 -0
  40. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/sphinx_highlight.js +0 -0
  41. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/styles/furo-extensions.css +0 -0
  42. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/styles/furo-extensions.css.map +0 -0
  43. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/styles/furo.css +0 -0
  44. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/_static/styles/furo.css.map +0 -0
  45. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/api/pycosmommf.rst +0 -0
  46. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/api_tab.md +0 -0
  47. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/basic_usage.md +0 -0
  48. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/conf.py +0 -0
  49. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/CosmoMMF_Dark.png +0 -0
  50. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/CosmoMMF_light.png +0 -0
  51. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/final_NEXUSPLUS_Signatures_hydro.png +0 -0
  52. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/final_NEXUSPLUS_Signatures_hydro_dark.png +0 -0
  53. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/final_tagging_figure.png +0 -0
  54. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/images/final_tagging_figure_dark.png +0 -0
  55. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/index.md +0 -0
  56. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/noxfile.py +0 -0
  57. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/pyproject.toml +0 -0
  58. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/__init__.py +0 -0
  59. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/_version.pyi +0 -0
  60. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/filter.py +0 -0
  61. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/hessian.py +0 -0
  62. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/py.typed +0 -0
  63. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/signatures.py +0 -0
  64. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/utils.py +0 -0
  65. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/tests/__init__.py +0 -0
  66. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/tests/test_integration.py +0 -0
  67. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/tests/test_package.py +0 -0
  68. {pycosmommf-1.0.1 → pycosmommf-1.0.2}/tests/test_unit.py +0 -0
{pycosmommf-1.0.1 → pycosmommf-1.0.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycosmommf
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- Version: 1.0.1
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+ Version: 1.0.2
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  Summary: A package for identifying structures in the cosmic web.
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  Project-URL: Homepage, https://github.com/James11222/pycosmommf
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  Project-URL: Bug Tracker, https://github.com/James11222/pycosmommf/issues
{pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/_version.py RENAMED
@@ -17,5 +17,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '1.0.1'
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- __version_tuple__ = version_tuple = (1, 0, 1)
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+ __version__ = version = '1.0.2'
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+ __version_tuple__ = version_tuple = (1, 0, 2)
{pycosmommf-1.0.1 → pycosmommf-1.0.2}/src/pycosmommf/tagging.py RENAMED
@@ -167,14 +167,14 @@ def calc_structure_bools(
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  msg = "make sure that you are not inputing the overdensity field δ = ρ/<ρ> - 1, but rather δ + 1 = ρ/<ρ>."
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  raise ValueError(msg)
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- # Check if the input density_cube is actually δ + 1 = ρ/<ρ> or just ρ
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- if np.mean(density_cube) > 1.0:
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- # If the mean is greater than 1, we assume it is simply ρ, but we want to transform to δ + 1 = ρ/<ρ>
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- if verbose_flag: # pragma: no cover
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- print(
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- "Input density_cube is in density units, transforming to δ + 1 = ρ/<ρ>."
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- )
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- density_cube /= np.mean(density_cube) # normalize to mean = 1
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+ # # Check if the input density_cube is actually δ + 1 = ρ/<ρ> or just ρ
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+ # if np.mean(density_cube) != 1.0:
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+ # # If the mean is greater than 1, we assume it is simply ρ, but we want to transform to δ + 1 = ρ/<ρ>
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+ # if verbose_flag: # pragma: no cover
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+ # print(
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+ # "Input density_cube is in density units, transforming to δ + 1 = ρ/<ρ>."
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+ # )
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+ # density_cube /= np.mean(density_cube) # normalize to mean = 1
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  # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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  # Step 1. Create Cluster bool Filter
{pycosmommf-1.0.1 → pycosmommf-1.0.2}/.git_archival.txt RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/.gitattributes RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/.gitignore RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/.readthedocs.yaml RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/LICENSE RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/README.md RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/api_tab.md RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/conf.py RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/docs/index.md RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/noxfile.py RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/pyproject.toml RENAMED
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{pycosmommf-1.0.1 → pycosmommf-1.0.2}/tests/__init__.py RENAMED
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