Pgenlib 0.95.0__tar.gz → 0.95.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pgenlib-0.95.0 → pgenlib-0.95.2}/MANIFEST.in +1 -0
- {pgenlib-0.95.0/src/pgenlib.egg-info → pgenlib-0.95.2}/PKG-INFO +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/pyproject.toml +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/setup.py +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/pgenlib/pgenlib.pyx +154 -32
- {pgenlib-0.95.0 → pgenlib-0.95.2/src/pgenlib.egg-info}/PKG-INFO +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/pgenlib.egg-info/SOURCES.txt +0 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_ffi_support.cc +4 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_ffi_support.h +8 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_misc.h +5 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_read.cc +275 -109
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_read.h +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_write.cc +54 -259
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_write.h +9 -35
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_base.cc +18 -4
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_base.h +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_bgzf.cc +12 -2
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_bits.cc +130 -35
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_bits.h +5 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_float.h +2 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_htable.cc +14 -4
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_simd.h +9 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_string.cc +44 -10
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_string.h +8 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_text.cc +18 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_text.h +2 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_thread.cc +1 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pvar_ffi_support.cc +12 -1
- {pgenlib-0.95.0 → pgenlib-0.95.2}/tests/test_multithread.py +11 -8
- {pgenlib-0.95.0 → pgenlib-0.95.2}/tests/test_pgenlib.py +184 -0
- pgenlib-0.95.0/src/pgenlib/pgenlib.cpp +0 -91996
- {pgenlib-0.95.0 → pgenlib-0.95.2}/LICENSE +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/README.md +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/setup.cfg +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/pgenlib.egg-info/dependency_links.txt +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/pgenlib.egg-info/requires.txt +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/pgenlib.egg-info/top_level.txt +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pgenlib_misc.cc +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_bgzf.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_float.cc +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_htable.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_memory.cc +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_memory.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_simd.cc +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_thread.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_zstfile.cc +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/plink2_zstfile.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/include/pvar_ffi_support.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/common_defs.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/adler32.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/adler32_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/arm_cpu_features.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/cpu_features.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/crc32_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/crc32_pmull_helpers.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/crc32_pmull_wide.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/arm/matchfinder_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/bt_matchfinder.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/cpu_features_common.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/crc32.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/crc32_multipliers.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/crc32_tables.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/decompress_template.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/deflate_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/deflate_compress.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/deflate_constants.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/deflate_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/gzip_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/gzip_constants.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/gzip_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/hc_matchfinder.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/ht_matchfinder.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/lib_common.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/matchfinder_common.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/utils.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/adler32_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/adler32_template.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/cpu_features.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/crc32_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/crc32_pclmul_template.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/decompress_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/matchfinder_impl.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/x86/x86_cpu_features.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/zlib_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/zlib_constants.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/lib/zlib_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/libdeflate/libdeflate.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/check.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/debug-trap.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/hedley.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-aes.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-align.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-arch.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-bf16.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-common.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-complex.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-constify.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-detect-clang.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-diagnostic.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-f16.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-features.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/simde-math.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/aes.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/avx.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/avx2.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/clmul.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/f16c.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/fma.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/gfni.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/mmx.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/sse.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/sse2.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/sse3.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/sse4.1.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/sse4.2.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/ssse3.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/svml.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/simde/x86/xop.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/allocations.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/bits.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/bitstream.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/compiler.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/cpu.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/debug.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/debug.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/entropy_common.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/error_private.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/error_private.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/fse.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/fse_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/huf.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/mem.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/pool.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/pool.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/portability_macros.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/threading.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/threading.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/xxhash.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/xxhash.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/zstd_common.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/zstd_deps.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/zstd_internal.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/common/zstd_trace.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/clevels.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/fse_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/hist.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/hist.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/huf_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_internal.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_literals.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_literals.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_sequences.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_sequences.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_superblock.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_compress_superblock.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_cwksp.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_double_fast.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_double_fast.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_fast.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_fast.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_lazy.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_lazy.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_ldm.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_ldm.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_ldm_geartab.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_opt.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_opt.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_preSplit.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstd_preSplit.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstdmt_compress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/compress/zstdmt_compress.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/huf_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_ddict.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_ddict.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_decompress.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_decompress_block.c +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_decompress_block.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/decompress/zstd_decompress_internal.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/zdict.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/zstd.h +0 -0
- {pgenlib-0.95.0 → pgenlib-0.95.2}/src/plink2/zstd/lib/zstd_errors.h +0 -0
|
@@ -85,7 +85,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
|
|
|
85
85
|
|
|
86
86
|
setuptools.setup(
|
|
87
87
|
name="pgenlib",
|
|
88
|
-
version="0.95.
|
|
88
|
+
version="0.95.2",
|
|
89
89
|
author="Christopher Chang",
|
|
90
90
|
author_email="chrchang@alumni.caltech.edu",
|
|
91
91
|
description="Python wrapper for pgenlib's basic reader and writer.",
|