Pgenlib 0.90.1__tar.gz → 0.91.0__tar.gz

pgenlib-0.91.0/MANIFEST.in

@@ -0,0 +1,2 @@
+include src/pgenlib/pgenlib.pyx
+graft src/plink2

{Pgenlib-0.90.1/src/Pgenlib.egg-info → pgenlib-0.91.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: Pgenlib
-Version: 0.90.1
+Version: 0.91.0
 Summary: Python wrapper for pgenlib's basic reader and writer.
 Home-page: https://github.com/chrchang/plink-ng
 Author: Christopher Chang
@@ -12,12 +12,17 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.5
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: numpy>=1.19.0
 
 This provides a basic Python API for pgenlib; see [python_api.txt](python_api.txt) for details.
 
 
 ### Build instructions
-PyPI: `pip install Pgenlib`
+PyPI:
+```
+pip install 'pip>=20.3'
+pip install Pgenlib
+```
 
 To build from GitHub instead, clone the repository:
 

{Pgenlib-0.90.1 → pgenlib-0.91.0}/README.md

@@ -2,7 +2,11 @@ This provides a basic Python API for pgenlib; see [python_api.txt](python_api.tx
 
 
 ### Build instructions
-PyPI: `pip install Pgenlib`
+PyPI:
+```
+pip install 'pip>=20.3'
+pip install Pgenlib
+```
 
 To build from GitHub instead, clone the repository:
 

pgenlib-0.91.0/pyproject.toml

@@ -0,0 +1,9 @@
+[build-system]
+requires = [
+    "wheel",
+    "setuptools",
+    "Cython>=0.29.21",
+    "oldest-supported-numpy>=2022.8.16; python_version < '3.9'",
+    "numpy>=2.0.0; python_version >= '3.9'",
+]
+build-backend = "setuptools.build_meta"

{Pgenlib-0.90.1 → pgenlib-0.91.0}/setup.py

@@ -80,7 +80,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
 
 setuptools.setup(
     name="Pgenlib",
-    version="0.90.1",
+    version="0.91.0",
     author="Christopher Chang",
     author_email="chrchang@alumni.caltech.edu",
     description="Python wrapper for pgenlib's basic reader and writer.",
@@ -99,5 +99,8 @@ setuptools.setup(
     packages=setuptools.find_packages(where="src"),
     python_requires=">=3.5",
     libraries=[clib],
-    ext_modules=cythonize(ext_modules)
+    ext_modules=cythonize(ext_modules),
+    install_requires = [
+        "numpy>=1.19.0",
+    ],
 )

{Pgenlib-0.90.1 → pgenlib-0.91.0/src/Pgenlib.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: Pgenlib
-Version: 0.90.1
+Version: 0.91.0
 Summary: Python wrapper for pgenlib's basic reader and writer.
 Home-page: https://github.com/chrchang/plink-ng
 Author: Christopher Chang
@@ -12,12 +12,17 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.5
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: numpy>=1.19.0
 
 This provides a basic Python API for pgenlib; see [python_api.txt](python_api.txt) for details.
 
 
 ### Build instructions
-PyPI: `pip install Pgenlib`
+PyPI:
+```
+pip install 'pip>=20.3'
+pip install Pgenlib
+```
 
 To build from GitHub instead, clone the repository:
 

{Pgenlib-0.90.1 → pgenlib-0.91.0}/src/Pgenlib.egg-info/SOURCES.txt

@@ -3,20 +3,10 @@ MANIFEST.in
 README.md
 pyproject.toml
 setup.py
-../pgenlib_ffi_support.cc
-../include/pgenlib_misc.cc
-../include/pgenlib_misc.h
-../include/pgenlib_read.cc
-../include/pgenlib_read.h
-../include/pgenlib_write.cc
-../include/pgenlib_write.h
-../include/plink2_base.cc
-../include/plink2_base.h
-../include/plink2_bits.cc
-../include/plink2_bits.h
 src/Pgenlib.egg-info/PKG-INFO
 src/Pgenlib.egg-info/SOURCES.txt
 src/Pgenlib.egg-info/dependency_links.txt
+src/Pgenlib.egg-info/requires.txt
 src/Pgenlib.egg-info/top_level.txt
 src/pgenlib/pgenlib.cpp
 src/pgenlib/pgenlib.pyx
@@ -52,9 +42,7 @@ src/plink2/libdeflate/lib/bt_matchfinder.h
 src/plink2/libdeflate/lib/cpu_features_common.h
 src/plink2/libdeflate/lib/crc32.c
 src/plink2/libdeflate/lib/crc32_multipliers.h
-src/plink2/libdeflate/lib/crc32_table.h
 src/plink2/libdeflate/lib/crc32_tables.h
-src/plink2/libdeflate/lib/crc32_vec_template.h
 src/plink2/libdeflate/lib/decompress_template.h
 src/plink2/libdeflate/lib/deflate_compress.c
 src/plink2/libdeflate/lib/deflate_compress.h
@@ -67,7 +55,6 @@ src/plink2/libdeflate/lib/hc_matchfinder.h
 src/plink2/libdeflate/lib/ht_matchfinder.h
 src/plink2/libdeflate/lib/lib_common.h
 src/plink2/libdeflate/lib/matchfinder_common.h
-src/plink2/libdeflate/lib/unaligned.h
 src/plink2/libdeflate/lib/utils.c
 src/plink2/libdeflate/lib/zlib_compress.c
 src/plink2/libdeflate/lib/zlib_constants.h
@@ -86,6 +73,37 @@ src/plink2/libdeflate/lib/x86/crc32_pclmul_template.h
 src/plink2/libdeflate/lib/x86/decompress_impl.h
 src/plink2/libdeflate/lib/x86/matchfinder_impl.h
 src/plink2/libdeflate/lib/x86/x86_cpu_features.c
+src/plink2/simde/check.h
+src/plink2/simde/debug-trap.h
+src/plink2/simde/hedley.h
+src/plink2/simde/simde-aes.h
+src/plink2/simde/simde-align.h
+src/plink2/simde/simde-arch.h
+src/plink2/simde/simde-bf16.h
+src/plink2/simde/simde-common.h
+src/plink2/simde/simde-complex.h
+src/plink2/simde/simde-constify.h
+src/plink2/simde/simde-detect-clang.h
+src/plink2/simde/simde-diagnostic.h
+src/plink2/simde/simde-f16.h
+src/plink2/simde/simde-features.h
+src/plink2/simde/simde-math.h
+src/plink2/simde/x86/aes.h
+src/plink2/simde/x86/avx.h
+src/plink2/simde/x86/avx2.h
+src/plink2/simde/x86/clmul.h
+src/plink2/simde/x86/f16c.h
+src/plink2/simde/x86/fma.h
+src/plink2/simde/x86/gfni.h
+src/plink2/simde/x86/mmx.h
+src/plink2/simde/x86/sse.h
+src/plink2/simde/x86/sse2.h
+src/plink2/simde/x86/sse3.h
+src/plink2/simde/x86/sse4.1.h
+src/plink2/simde/x86/sse4.2.h
+src/plink2/simde/x86/ssse3.h
+src/plink2/simde/x86/svml.h
+src/plink2/simde/x86/xop.h
 src/plink2/zstd/lib/zdict.h
 src/plink2/zstd/lib/zstd.h
 src/plink2/zstd/lib/zstd_errors.h

pgenlib-0.91.0/src/Pgenlib.egg-info/requires.txt

@@ -0,0 +1 @@
+numpy>=1.19.0