PartSegCore-compiled-backend 0.15.12__tar.gz → 0.15.13__tar.gz

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Files changed (59) hide show
  1. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/.pre-commit-config.yaml +2 -5
  2. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/PKG-INFO +1 -1
  3. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/pyproject.toml +7 -1
  4. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/_fast_unique.pyx +1 -1
  5. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/find_split.py +0 -2
  6. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/version.py +2 -2
  7. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/.gitignore +0 -0
  8. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/CMakeLists.txt +0 -0
  9. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/LICENSE.txt +0 -0
  10. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/MANIFEST.in +0 -0
  11. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/Readme.md +0 -0
  12. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/Makefile +0 -0
  13. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/calc_bounds.rst +0 -0
  14. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/conf.py +0 -0
  15. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/fast_unique.rst +0 -0
  16. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/index.rst +0 -0
  17. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/make.bat +0 -0
  18. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/napari_mapping.rst +0 -0
  19. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/docs/sprawl_utils.rst +0 -0
  20. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/__init__.py +0 -0
  21. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/_fast_unique.pyi +0 -0
  22. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/_napari_mapping.pyx +0 -0
  23. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/calc_bounds.pyi +0 -0
  24. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/calc_bounds.pyx +0 -0
  25. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/color_image_cython.pyi +0 -0
  26. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/color_image_cython.pyx +0 -0
  27. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/fast_unique.py +0 -0
  28. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/multiscale_opening/__init__.py +0 -0
  29. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/multiscale_opening/mso.h +0 -0
  30. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/multiscale_opening/mso_bind.pyi +0 -0
  31. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/multiscale_opening/mso_bind.pyx +0 -0
  32. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/multiscale_opening/my_queue.h +0 -0
  33. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/napari_mapping.py +0 -0
  34. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/__init__.py +0 -0
  35. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/distance_utils.pxd +0 -0
  36. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/euclidean_cython.pyi +0 -0
  37. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/euclidean_cython.pyx +0 -0
  38. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/find_split.pyi +0 -0
  39. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/fuzzy_distance.pyx +0 -0
  40. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/global_consts.h +0 -0
  41. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/my_queue.h +0 -0
  42. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/path_sprawl_cython.pyi +0 -0
  43. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/path_sprawl_cython.pyx +0 -0
  44. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/put_borders_in_queue.pyx +0 -0
  45. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/sprawl_utils.pyi +0 -0
  46. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/sprawl_utils/sprawl_utils.pyx +0 -0
  47. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/triangulate.pyx +0 -0
  48. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/triangulation/debug_util.hpp +0 -0
  49. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/triangulation/intersection.hpp +0 -0
  50. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/triangulation/point.hpp +0 -0
  51. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/triangulation/triangulate.hpp +0 -0
  52. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/PartSegCore_compiled_backend/utils.py +0 -0
  53. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_calc_bounds.py +0 -0
  54. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_coloring.py +0 -0
  55. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_fast_unique.py +0 -0
  56. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_napari_mapping.py +0 -0
  57. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_sprawl_utils/__init__.py +0 -0
  58. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_sprawl_utils/test_euclidean.py +0 -0
  59. {partsegcore_compiled_backend-0.15.12 → partsegcore_compiled_backend-0.15.13}/src/tests/test_triangulate.py +0 -0
@@ -1,10 +1,7 @@
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- default_language_version:
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- python: python3.9
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-
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  repos:
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  - repo: https://github.com/astral-sh/ruff-pre-commit
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  # Ruff version.
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- rev: v0.9.10
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+ rev: v0.12.0
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  hooks:
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  # Run the linter.
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  - id: ruff
@@ -36,7 +33,7 @@ repos:
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  additional_dependencies:
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  - tomli
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  - repo: https://github.com/pre-commit/mirrors-clang-format
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- rev: v19.1.7 # Use the sha / tag you want to point at
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+ rev: v20.1.6 # Use the sha / tag you want to point at
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  hooks:
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  - id: clang-format
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  args: ["-style=Google"]
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: PartSegCore_compiled_backend
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- Version: 0.15.12
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+ Version: 0.15.13
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  Summary: PartSegCore compiled backend,
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  Keywords: bioimaging
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  Author-Email: Grzegorz Bokota <g.bokota@cent.uw.edu.pl>
@@ -1,6 +1,12 @@
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  [build-system]
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  # Minimum requirements for the build system to execute.
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- requires = ["scikit-build-core", "Cython", "cython-cmake", "numpy>=2", "setuptools_scm[toml]>=8.1"] # PEP 508 specifications.
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+ requires = [
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+ "scikit-build-core",
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+ "Cython",
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+ "cython-cmake",
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+ "numpy>=2",
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+ "setuptools_scm[toml]>=8.1"
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+ ] # PEP 508 specifications.
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  build-backend = "scikit_build_core.build"
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  [tool.scikit-build]
@@ -27,7 +27,7 @@ ctypedef fused numpy_int_types:
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  def unique1d(np.ndarray[numpy_int_types, ndim=1] array):
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  cdef unordered_set[numpy_int_types] unique_values
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  cdef vector[unordered_set[numpy_int_types]] unique_values_vector
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- cdef Py_ssize_t i, j, n_rows, n_cols, id_num
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+ cdef Py_ssize_t i, j, n_rows, n_cols, id_num, n_items
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  cdef numpy_int_types prev_val, v
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  n_items = array.shape[0]
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  unique_values_vector.resize(50) # openmp.omp_get_num_threads())
@@ -4,7 +4,6 @@ This module contains function to perform multiple component sprawl (watershed li
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  from __future__ import annotations
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- import logging
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  import os
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  import typing
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  from concurrent.futures import ThreadPoolExecutor, as_completed
@@ -385,7 +384,6 @@ def reverse_permutation(perm: list[int]) -> list[int]:
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  def relabel_with_perm(labeling: list, perm: list) -> list:
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- logging.debug('%(labeling), %(perm)', extra={'labeling': labeling, 'perm': perm})
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  perm = reverse_permutation(perm)
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  return [perm[x] for x in labeling]
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@@ -17,5 +17,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '0.15.12'
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- __version_tuple__ = version_tuple = (0, 15, 12)
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+ __version__ = version = '0.15.13'
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+ __version_tuple__ = version_tuple = (0, 15, 13)