OntoCheck 0.0.1__tar.gz

ontocheck-0.0.1/LICENSE

@@ -0,0 +1,9 @@
+Copyright 2025 SDLE Lab
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

ontocheck-0.0.1/PKG-INFO

@@ -0,0 +1,211 @@
+Metadata-Version: 2.4
+Name: OntoCheck
+Version: 0.0.1
+Summary: A package for assessing the quality and structure of ontologies.
+Author-email: "Rishabh Kundu, Van Tran, Redad Mehdi,Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French" <mxm1684@case.edu>
+Maintainer-email: Redad Mehdi <mxm1684@case.edu>
+License: Copyright 2025 SDLE Lab
+        
+        Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+        
+        1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+        
+        2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+        
+        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+Project-URL: Homepage, https://github.com/cwru-sdle/OntoCheck
+Project-URL: Documentation, https://ontocheck.readthedocs.io/en/latest/
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: rdflib
+Requires-Dist: networkx
+Requires-Dist: requests
+Dynamic: license-file
+
+# Introduction
+
+OntoCheck is a Py package that provides a suite of metrics for evaluating ontology quality, usability, and compliance. It aims to support both developers by revealing potential quality gaps and users by assessing an ontology’s fitness for use across different domains.
+
+-> Motivation
+
+While there are established approaches for assessing linked-data quality and FAIR data compliance, there are no widely accepted standards dedicated specifically to ontology assessment. Many existing frameworks lack maintenance, and comprehensive semantic data management metrics remain underdeveloped.
+
+-> What OntoCheck Does
+
+OntoCheck builds on existing concepts rather than reinventing them. It brings together:
+
+    - Linked-data assessment principles
+
+    - FAIR-data compliance indicators
+
+    - Semantic data management metrics
+
+All implemented within a maintainable and user-friendly Py environment.
+
+-> Key Features
+
+    – combines adapted metrics from literature with new, experience-based measures
+
+    – users can select which metrics to apply
+
+    – generates structured evaluation summaries for easy review
+
+    – ongoing development of feedback mechanisms to refine and expand metrics
+
+-> Our Goal
+
+OntoCheck strives to promote transparency and quality in ontology development. By integrating principles from linked-data and FAIR-data assessments, we aim to foster a foundation for future standardization in ontology evaluation.
+
+We welcome feedback and contributions from the community as we continue to expand the metrics and tools offered in OntoCheck.
+
+This tool is actively developed and maintained by the **SDLE Research Center at Case Western Reserve University**.
+
+---
+
+## ✍️ Authors
+
+* Rishabh Kundu
+* Redad Mehdi
+* Van D. Tran
+* Erika I. Barcelos
+* Alp Sehirlioglu
+* Yinghui Wu
+* Roger H. French
+
+---
+
+## 🏢 Affiliation
+
+Materials Data Science for Stockpile Stewardship Center of Excellence, Case Western Reserve University, Cleveland, OH 44106, USA
+
+---
+
+## 🐍 Installation
+
+```bash
+pip install OntoCheck
+```
+
+---
+
+## ⏰ Quick Start
+
+```bash
+ontocheck -h
+```
+
+---
+
+## 🛠️ Available Metrics in v0.0.1
+
+
+For more detail visit our [Read The Docs website](https://ontology-assessment.readthedocs.io)
+
+    "altLabelCheck": mainAltLabelCheck_v_0_0_1,
+    "externalLinks": check_external_data_provider_links_ttl_v_0_0_1,
+    "isolatedElements": check_for_isolated_elements_v_0_0_1,
+    "humanLicense": check_human_readable_license_ttl_v_0_0_1,
+    "rdfDump": check_rdf_dump_accessibility_ttl_v_0_0_1,
+    "sparqlEndpoint": check_sparql_accessibility_ttl_v_0_0_1,
+    "classConnections": count_class_connected_components_v_0_0_1,
+    "definitionCheck": mainDefCheck_v_0_0_1,
+    "duplicateLabels": find_duplicate_labels_from_graph_v_0_0_1,
+    "missingDomainRange": get_properties_missing_domain_and_range_v_0_0_1,
+    "leafNodeCheck": mainLeafNodeCheck_v_0_0_1,
+    "semanticConnection": mainSemanticConnection_v_0_0_1,
+
+
+## Example runs in command
+
+
+Running metrics: altLabelCheck and humanLicense
+
+``bash
+ontocheck path/to/ontology.ttl --metrics altLabelCheck humanLicense -log-file path/to/log/file.log --csv-file path/to/file.csv
+``
+
+Results of run:
+
+``text
+--- SKOS Definition Coverage Summary ---
+Total classes analyzed: 1406
+Classes with definitions: 360(25.6%)
+Classes without definitions: 1046 (74.4%)
+Assessment: Low definition coverage
+``
+
+``text
+--- Classes WITH altLabel (360) ---
+Class: afe:AFE_0002281
+Preferred Label: Nuclear Magnetic Resonance Tube
+Alternative Labels (1):
+- "NMR Tube"
+Class: cco: ont00000003
+Preferred Label: Designative Name
+Alternative Labels (1):
+- "Name"
+Class: cco: ont00000009
+Preferred Label: Mass Density
+Alternative Labels (1):
+- "Density"
+``
+
+``text
+--- Classes WITHOUT altLabel (1046) ---
+<https://w3id.org/ODE_AM/AMAO#AdditiveManufacturingMachine>
+afe:AFE_0000029 (Label: "well-plate") afe: AFE_0000052 (Label: "cuvette") afe:AFE_0000329 (Label: "Vial")
+afe:AFE_0000409 (Label: "monochromator") afe:AFE_0000718 (Label: "Tube")
+afe:AFE_0001691 (Label: "non-contactprobe") afe:AFE_0001703 (Label: "pressure regulator") afe:AFE_0001772 (Label: "deuteriumlamp") afe:AFE_0002248 (Label: "probe")
+afe: AFR_0001856 (Label: "electric current") afm: AFM_0000059 (Label: "additive") afm:AFM_0000884 (Label: "electricalenergy")
+afm: AFM_0001032 (Label: "foam") afm:AFM_0001097 afr: AFR_0000955
+afr:AFR_0002641 (Label: "viscosity")
+``
+
+Run status:
+
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| humanLicense | 1 | Success |
+
+
+(all metrics)
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| externalLinks | 0.08476821 | Success |
+| isolatedElements | ['Number of i... | Success |
+| humanLicense | 1 | Success |
+| rdfDump | 0 | Success |
+| sparqlEndpoint | 0 | Success |
+| classConnections | 268 | Success |
+| definitionCheck | | Success |
+| duplicateLabels | 51 | Success |
+| missingDomains | ['count_missi... | Success |
+| leafNodeCheck | | Success |
+| semanticConnection | | Success |
+
+
+
+## Acknowledge
+
+* U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under the Solar Energy Technologies Office (SETO) — Agreement Numbers **DE-EE0009353** and **DE-EE0009347**
+* Department of Energy (National Nuclear Security Administration) — Award Number **DE-NA0004104** and Contract Number **B647887**
+* U.S. National Science Foundation — Award Number **2133576**
+
+
+## How to cite package
+
+If you use ``OntoCheck`` in your work please cite   
+
+Rishabh Kundu, Redad Mehdi, Van D. Tran, Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French (2025). OntoCheck: A package for assessing the quality and structure of ontologies. [Python]. https://pypi.org/project/OntoCheck/
+
+
+

ontocheck-0.0.1/README.md

@@ -0,0 +1,182 @@
+# Introduction
+
+OntoCheck is a Py package that provides a suite of metrics for evaluating ontology quality, usability, and compliance. It aims to support both developers by revealing potential quality gaps and users by assessing an ontology’s fitness for use across different domains.
+
+-> Motivation
+
+While there are established approaches for assessing linked-data quality and FAIR data compliance, there are no widely accepted standards dedicated specifically to ontology assessment. Many existing frameworks lack maintenance, and comprehensive semantic data management metrics remain underdeveloped.
+
+-> What OntoCheck Does
+
+OntoCheck builds on existing concepts rather than reinventing them. It brings together:
+
+    - Linked-data assessment principles
+
+    - FAIR-data compliance indicators
+
+    - Semantic data management metrics
+
+All implemented within a maintainable and user-friendly Py environment.
+
+-> Key Features
+
+    – combines adapted metrics from literature with new, experience-based measures
+
+    – users can select which metrics to apply
+
+    – generates structured evaluation summaries for easy review
+
+    – ongoing development of feedback mechanisms to refine and expand metrics
+
+-> Our Goal
+
+OntoCheck strives to promote transparency and quality in ontology development. By integrating principles from linked-data and FAIR-data assessments, we aim to foster a foundation for future standardization in ontology evaluation.
+
+We welcome feedback and contributions from the community as we continue to expand the metrics and tools offered in OntoCheck.
+
+This tool is actively developed and maintained by the **SDLE Research Center at Case Western Reserve University**.
+
+---
+
+## ✍️ Authors
+
+* Rishabh Kundu
+* Redad Mehdi
+* Van D. Tran
+* Erika I. Barcelos
+* Alp Sehirlioglu
+* Yinghui Wu
+* Roger H. French
+
+---
+
+## 🏢 Affiliation
+
+Materials Data Science for Stockpile Stewardship Center of Excellence, Case Western Reserve University, Cleveland, OH 44106, USA
+
+---
+
+## 🐍 Installation
+
+```bash
+pip install OntoCheck
+```
+
+---
+
+## ⏰ Quick Start
+
+```bash
+ontocheck -h
+```
+
+---
+
+## 🛠️ Available Metrics in v0.0.1
+
+
+For more detail visit our [Read The Docs website](https://ontology-assessment.readthedocs.io)
+
+    "altLabelCheck": mainAltLabelCheck_v_0_0_1,
+    "externalLinks": check_external_data_provider_links_ttl_v_0_0_1,
+    "isolatedElements": check_for_isolated_elements_v_0_0_1,
+    "humanLicense": check_human_readable_license_ttl_v_0_0_1,
+    "rdfDump": check_rdf_dump_accessibility_ttl_v_0_0_1,
+    "sparqlEndpoint": check_sparql_accessibility_ttl_v_0_0_1,
+    "classConnections": count_class_connected_components_v_0_0_1,
+    "definitionCheck": mainDefCheck_v_0_0_1,
+    "duplicateLabels": find_duplicate_labels_from_graph_v_0_0_1,
+    "missingDomainRange": get_properties_missing_domain_and_range_v_0_0_1,
+    "leafNodeCheck": mainLeafNodeCheck_v_0_0_1,
+    "semanticConnection": mainSemanticConnection_v_0_0_1,
+
+
+## Example runs in command
+
+
+Running metrics: altLabelCheck and humanLicense
+
+``bash
+ontocheck path/to/ontology.ttl --metrics altLabelCheck humanLicense -log-file path/to/log/file.log --csv-file path/to/file.csv
+``
+
+Results of run:
+
+``text
+--- SKOS Definition Coverage Summary ---
+Total classes analyzed: 1406
+Classes with definitions: 360(25.6%)
+Classes without definitions: 1046 (74.4%)
+Assessment: Low definition coverage
+``
+
+``text
+--- Classes WITH altLabel (360) ---
+Class: afe:AFE_0002281
+Preferred Label: Nuclear Magnetic Resonance Tube
+Alternative Labels (1):
+- "NMR Tube"
+Class: cco: ont00000003
+Preferred Label: Designative Name
+Alternative Labels (1):
+- "Name"
+Class: cco: ont00000009
+Preferred Label: Mass Density
+Alternative Labels (1):
+- "Density"
+``
+
+``text
+--- Classes WITHOUT altLabel (1046) ---
+<https://w3id.org/ODE_AM/AMAO#AdditiveManufacturingMachine>
+afe:AFE_0000029 (Label: "well-plate") afe: AFE_0000052 (Label: "cuvette") afe:AFE_0000329 (Label: "Vial")
+afe:AFE_0000409 (Label: "monochromator") afe:AFE_0000718 (Label: "Tube")
+afe:AFE_0001691 (Label: "non-contactprobe") afe:AFE_0001703 (Label: "pressure regulator") afe:AFE_0001772 (Label: "deuteriumlamp") afe:AFE_0002248 (Label: "probe")
+afe: AFR_0001856 (Label: "electric current") afm: AFM_0000059 (Label: "additive") afm:AFM_0000884 (Label: "electricalenergy")
+afm: AFM_0001032 (Label: "foam") afm:AFM_0001097 afr: AFR_0000955
+afr:AFR_0002641 (Label: "viscosity")
+``
+
+Run status:
+
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| humanLicense | 1 | Success |
+
+
+(all metrics)
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| externalLinks | 0.08476821 | Success |
+| isolatedElements | ['Number of i... | Success |
+| humanLicense | 1 | Success |
+| rdfDump | 0 | Success |
+| sparqlEndpoint | 0 | Success |
+| classConnections | 268 | Success |
+| definitionCheck | | Success |
+| duplicateLabels | 51 | Success |
+| missingDomains | ['count_missi... | Success |
+| leafNodeCheck | | Success |
+| semanticConnection | | Success |
+
+
+
+## Acknowledge
+
+* U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under the Solar Energy Technologies Office (SETO) — Agreement Numbers **DE-EE0009353** and **DE-EE0009347**
+* Department of Energy (National Nuclear Security Administration) — Award Number **DE-NA0004104** and Contract Number **B647887**
+* U.S. National Science Foundation — Award Number **2133576**
+
+
+## How to cite package
+
+If you use ``OntoCheck`` in your work please cite   
+
+Rishabh Kundu, Redad Mehdi, Van D. Tran, Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French (2025). OntoCheck: A package for assessing the quality and structure of ontologies. [Python]. https://pypi.org/project/OntoCheck/
+
+
+

ontocheck-0.0.1/pyproject.toml

@@ -0,0 +1,38 @@
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "OntoCheck"
+version = "0.0.1"
+authors = [
+  { name = "Rishabh Kundu, Van Tran, Redad Mehdi,Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French", email = "mxm1684@case.edu" },
+]
+maintainers = [
+  { name = "Redad Mehdi", email = "mxm1684@case.edu" },
+]
+description = "A package for assessing the quality and structure of ontologies."
+readme = "README.md"
+requires-python = ">=3.8"
+license = { file="LICENSE" }
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+    "Topic :: Scientific/Engineering",
+]
+dependencies = [
+  "rdflib",
+  "networkx",
+  "requests",
+]
+
+[project.urls]
+"Homepage" = "https://github.com/cwru-sdle/OntoCheck"
+"Documentation" = "https://ontocheck.readthedocs.io/en/latest/"
+
+[project.scripts]
+ontocheck = "ontocheck.cli:main"
+
+[tool.setuptools.packages.find]
+where = ["src"]

ontocheck-0.0.1/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

ontocheck-0.0.1/src/OntoCheck.egg-info/PKG-INFO

@@ -0,0 +1,211 @@
+Metadata-Version: 2.4
+Name: OntoCheck
+Version: 0.0.1
+Summary: A package for assessing the quality and structure of ontologies.
+Author-email: "Rishabh Kundu, Van Tran, Redad Mehdi,Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French" <mxm1684@case.edu>
+Maintainer-email: Redad Mehdi <mxm1684@case.edu>
+License: Copyright 2025 SDLE Lab
+        
+        Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+        
+        1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+        
+        2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+        
+        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+Project-URL: Homepage, https://github.com/cwru-sdle/OntoCheck
+Project-URL: Documentation, https://ontocheck.readthedocs.io/en/latest/
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: rdflib
+Requires-Dist: networkx
+Requires-Dist: requests
+Dynamic: license-file
+
+# Introduction
+
+OntoCheck is a Py package that provides a suite of metrics for evaluating ontology quality, usability, and compliance. It aims to support both developers by revealing potential quality gaps and users by assessing an ontology’s fitness for use across different domains.
+
+-> Motivation
+
+While there are established approaches for assessing linked-data quality and FAIR data compliance, there are no widely accepted standards dedicated specifically to ontology assessment. Many existing frameworks lack maintenance, and comprehensive semantic data management metrics remain underdeveloped.
+
+-> What OntoCheck Does
+
+OntoCheck builds on existing concepts rather than reinventing them. It brings together:
+
+    - Linked-data assessment principles
+
+    - FAIR-data compliance indicators
+
+    - Semantic data management metrics
+
+All implemented within a maintainable and user-friendly Py environment.
+
+-> Key Features
+
+    – combines adapted metrics from literature with new, experience-based measures
+
+    – users can select which metrics to apply
+
+    – generates structured evaluation summaries for easy review
+
+    – ongoing development of feedback mechanisms to refine and expand metrics
+
+-> Our Goal
+
+OntoCheck strives to promote transparency and quality in ontology development. By integrating principles from linked-data and FAIR-data assessments, we aim to foster a foundation for future standardization in ontology evaluation.
+
+We welcome feedback and contributions from the community as we continue to expand the metrics and tools offered in OntoCheck.
+
+This tool is actively developed and maintained by the **SDLE Research Center at Case Western Reserve University**.
+
+---
+
+## ✍️ Authors
+
+* Rishabh Kundu
+* Redad Mehdi
+* Van D. Tran
+* Erika I. Barcelos
+* Alp Sehirlioglu
+* Yinghui Wu
+* Roger H. French
+
+---
+
+## 🏢 Affiliation
+
+Materials Data Science for Stockpile Stewardship Center of Excellence, Case Western Reserve University, Cleveland, OH 44106, USA
+
+---
+
+## 🐍 Installation
+
+```bash
+pip install OntoCheck
+```
+
+---
+
+## ⏰ Quick Start
+
+```bash
+ontocheck -h
+```
+
+---
+
+## 🛠️ Available Metrics in v0.0.1
+
+
+For more detail visit our [Read The Docs website](https://ontology-assessment.readthedocs.io)
+
+    "altLabelCheck": mainAltLabelCheck_v_0_0_1,
+    "externalLinks": check_external_data_provider_links_ttl_v_0_0_1,
+    "isolatedElements": check_for_isolated_elements_v_0_0_1,
+    "humanLicense": check_human_readable_license_ttl_v_0_0_1,
+    "rdfDump": check_rdf_dump_accessibility_ttl_v_0_0_1,
+    "sparqlEndpoint": check_sparql_accessibility_ttl_v_0_0_1,
+    "classConnections": count_class_connected_components_v_0_0_1,
+    "definitionCheck": mainDefCheck_v_0_0_1,
+    "duplicateLabels": find_duplicate_labels_from_graph_v_0_0_1,
+    "missingDomainRange": get_properties_missing_domain_and_range_v_0_0_1,
+    "leafNodeCheck": mainLeafNodeCheck_v_0_0_1,
+    "semanticConnection": mainSemanticConnection_v_0_0_1,
+
+
+## Example runs in command
+
+
+Running metrics: altLabelCheck and humanLicense
+
+``bash
+ontocheck path/to/ontology.ttl --metrics altLabelCheck humanLicense -log-file path/to/log/file.log --csv-file path/to/file.csv
+``
+
+Results of run:
+
+``text
+--- SKOS Definition Coverage Summary ---
+Total classes analyzed: 1406
+Classes with definitions: 360(25.6%)
+Classes without definitions: 1046 (74.4%)
+Assessment: Low definition coverage
+``
+
+``text
+--- Classes WITH altLabel (360) ---
+Class: afe:AFE_0002281
+Preferred Label: Nuclear Magnetic Resonance Tube
+Alternative Labels (1):
+- "NMR Tube"
+Class: cco: ont00000003
+Preferred Label: Designative Name
+Alternative Labels (1):
+- "Name"
+Class: cco: ont00000009
+Preferred Label: Mass Density
+Alternative Labels (1):
+- "Density"
+``
+
+``text
+--- Classes WITHOUT altLabel (1046) ---
+<https://w3id.org/ODE_AM/AMAO#AdditiveManufacturingMachine>
+afe:AFE_0000029 (Label: "well-plate") afe: AFE_0000052 (Label: "cuvette") afe:AFE_0000329 (Label: "Vial")
+afe:AFE_0000409 (Label: "monochromator") afe:AFE_0000718 (Label: "Tube")
+afe:AFE_0001691 (Label: "non-contactprobe") afe:AFE_0001703 (Label: "pressure regulator") afe:AFE_0001772 (Label: "deuteriumlamp") afe:AFE_0002248 (Label: "probe")
+afe: AFR_0001856 (Label: "electric current") afm: AFM_0000059 (Label: "additive") afm:AFM_0000884 (Label: "electricalenergy")
+afm: AFM_0001032 (Label: "foam") afm:AFM_0001097 afr: AFR_0000955
+afr:AFR_0002641 (Label: "viscosity")
+``
+
+Run status:
+
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| humanLicense | 1 | Success |
+
+
+(all metrics)
+
+| Metric | Score | Status |
+|---|---|---|
+| altLabelCheck | | Success |
+| externalLinks | 0.08476821 | Success |
+| isolatedElements | ['Number of i... | Success |
+| humanLicense | 1 | Success |
+| rdfDump | 0 | Success |
+| sparqlEndpoint | 0 | Success |
+| classConnections | 268 | Success |
+| definitionCheck | | Success |
+| duplicateLabels | 51 | Success |
+| missingDomains | ['count_missi... | Success |
+| leafNodeCheck | | Success |
+| semanticConnection | | Success |
+
+
+
+## Acknowledge
+
+* U.S. Department of Energy’s Office of Energy Efficiency and Renewable Energy (EERE) under the Solar Energy Technologies Office (SETO) — Agreement Numbers **DE-EE0009353** and **DE-EE0009347**
+* Department of Energy (National Nuclear Security Administration) — Award Number **DE-NA0004104** and Contract Number **B647887**
+* U.S. National Science Foundation — Award Number **2133576**
+
+
+## How to cite package
+
+If you use ``OntoCheck`` in your work please cite   
+
+Rishabh Kundu, Redad Mehdi, Van D. Tran, Erika I. Barcelos, Alp Sehirlioglu, Yinghui Wu, Roger H. French (2025). OntoCheck: A package for assessing the quality and structure of ontologies. [Python]. https://pypi.org/project/OntoCheck/
+
+
+

ontocheck-0.0.1/src/OntoCheck.egg-info/SOURCES.txt

@@ -0,0 +1,26 @@
+LICENSE
+README.md
+pyproject.toml
+src/OntoCheck.egg-info/PKG-INFO
+src/OntoCheck.egg-info/SOURCES.txt
+src/OntoCheck.egg-info/dependency_links.txt
+src/OntoCheck.egg-info/entry_points.txt
+src/OntoCheck.egg-info/requires.txt
+src/OntoCheck.egg-info/top_level.txt
+src/ontocheck/__init__.py
+src/ontocheck/altLabelCheck.py
+src/ontocheck/check_external_data_provider_links_ttl.py
+src/ontocheck/check_for_isolated_elements.py
+src/ontocheck/check_human_readable_license_ttl.py
+src/ontocheck/check_rdf_dump_accessibility_ttl.py
+src/ontocheck/check_sparql_accessibility_ttl.py
+src/ontocheck/cli.py
+src/ontocheck/count_class_connected_components.py
+src/ontocheck/defCheck.py
+src/ontocheck/find_duplicate_labels_from_graph.py
+src/ontocheck/get_properties_missing_domain_and_range.py
+src/ontocheck/leafNodeCheck.py
+src/ontocheck/run_assessment.py
+src/ontocheck/semanticConnection.py
+src/ontocheck/helpers/__init__.py
+src/ontocheck/helpers/helpers.py

ontocheck-0.0.1/src/OntoCheck.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

ontocheck-0.0.1/src/OntoCheck.egg-info/entry_points.txt

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+[console_scripts]
+ontocheck = ontocheck.cli:main