OSBModelValidation 0.3.7__tar.gz → 0.3.8__tar.gz

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Files changed (130) hide show
  1. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8/OSBModelValidation.egg-info}/PKG-INFO +1 -1
  2. {osbmodelvalidation-0.3.7/OSBModelValidation.egg-info → osbmodelvalidation-0.3.8}/PKG-INFO +1 -1
  3. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getmoose.py +1 -1
  4. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getnrn.py +1 -1
  5. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/neuron_.py +1 -0
  6. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/utils/__init__.py +3 -3
  7. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/omv_util.py +2 -2
  8. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/setup.cfg +1 -1
  9. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/LICENSE.lesser +0 -0
  10. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/MANIFEST.in +0 -0
  11. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/OSBModelValidation.egg-info/SOURCES.txt +0 -0
  12. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/OSBModelValidation.egg-info/dependency_links.txt +0 -0
  13. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/OSBModelValidation.egg-info/entry_points.txt +0 -0
  14. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/OSBModelValidation.egg-info/requires.txt +0 -0
  15. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/OSBModelValidation.egg-info/top_level.txt +0 -0
  16. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/README.md +0 -0
  17. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/__init__.py +0 -0
  18. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/__init__.py +0 -0
  19. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/activation.py +0 -0
  20. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/analyzer.py +0 -0
  21. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/dryrun.py +0 -0
  22. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/input_resistance.py +0 -0
  23. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/morphology.py +0 -0
  24. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/rates.py +0 -0
  25. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/resting.py +0 -0
  26. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/spikes.py +0 -0
  27. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/temperature.py +0 -0
  28. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/timeseries.py +0 -0
  29. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/utils/__init__.py +0 -0
  30. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/utils/filenode.py +0 -0
  31. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/analyzers/utils/timeseries.py +0 -0
  32. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/autogen.py +0 -0
  33. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/common/__init__.py +0 -0
  34. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/common/inout.py +0 -0
  35. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/__init__.py +0 -0
  36. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/arbor_.py +0 -0
  37. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/brian1.py +0 -0
  38. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/brian2_.py +0 -0
  39. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/eden_.py +0 -0
  40. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/engine.py +0 -0
  41. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/genesis.py +0 -0
  42. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getarbor.py +0 -0
  43. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getbrian1.py +0 -0
  44. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getbrian2.py +0 -0
  45. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/geteden.py +0 -0
  46. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getgenesis.py +0 -0
  47. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getjlems.py +0 -0
  48. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getjnml.py +0 -0
  49. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getlibsbml.py +0 -0
  50. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getnest.py +0 -0
  51. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getnetpyne.py +0 -0
  52. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getneuroconstruct.py +0 -0
  53. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getnml2.py +0 -0
  54. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getoctave.py +0 -0
  55. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getpylems.py +0 -0
  56. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getpyneuroml.py +0 -0
  57. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getpynn.py +0 -0
  58. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getxpp.py +0 -0
  59. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jlems.py +0 -0
  60. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuroml.py +0 -0
  61. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlbrian.py +0 -0
  62. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlbrian2.py +0 -0
  63. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromleden.py +0 -0
  64. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlmoose.py +0 -0
  65. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlnetpyne.py +0 -0
  66. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlnetpyne_np2.py +0 -0
  67. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlnetpyne_np4.py +0 -0
  68. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlnrn.py +0 -0
  69. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlpynnnrn.py +0 -0
  70. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlvalidate.py +0 -0
  71. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlvalidatev1.py +0 -0
  72. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/jneuromlxpp.py +0 -0
  73. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/moose_.py +0 -0
  74. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/nestsli.py +0 -0
  75. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/netpyne_.py +0 -0
  76. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/netpyne__np2.py +0 -0
  77. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/netpyne__np4.py +0 -0
  78. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/octave.py +0 -0
  79. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pylems.py +0 -0
  80. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pylemsnml2.py +0 -0
  81. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynest.py +0 -0
  82. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pyneuroconstruct.py +0 -0
  83. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pyneuroml_.py +0 -0
  84. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pyneuromlvalidatesbml.py +0 -0
  85. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pyneuromlxpp.py +0 -0
  86. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pyneuron.py +0 -0
  87. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynn.py +0 -0
  88. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynnbrian1.py +0 -0
  89. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynnbrian2.py +0 -0
  90. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynnnest.py +0 -0
  91. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynnneuroml.py +0 -0
  92. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/pynnneuron.py +0 -0
  93. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/utils/genesis_utils.g +0 -0
  94. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/utils/wdir.py +0 -0
  95. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/xpp.py +0 -0
  96. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/experiment.py +0 -0
  97. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/find_tests.py +0 -0
  98. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/omt_mep_parser.py +0 -0
  99. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/parse_omt.py +0 -0
  100. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/mep.yaml +0 -0
  101. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/observable_datafile.yaml +0 -0
  102. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/observable_literal.yaml +0 -0
  103. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/observables.yaml +0 -0
  104. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/test/observable_datafile.yaml +0 -0
  105. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/test/observable_literal.1.yaml +0 -0
  106. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/base/test/observable_literal.3.yaml +0 -0
  107. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/expected.yaml +0 -0
  108. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/experiment.yaml +0 -0
  109. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/observable.yaml +0 -0
  110. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/protocol.yaml +0 -0
  111. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/protocol_properties.yaml +0 -0
  112. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/expected.1.yaml +0 -0
  113. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/expected.2.yaml +0 -0
  114. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/expected.3.yaml +0 -0
  115. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/expected.4.yaml +0 -0
  116. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/experiment.1.yaml +0 -0
  117. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/experiment.2.yaml +0 -0
  118. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/observable.yaml +0 -0
  119. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/protocol.1.yaml +0 -0
  120. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/schemata/types/test/protocol.2.yaml +0 -0
  121. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/tally.py +0 -0
  122. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/test/__init__.py +0 -0
  123. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/test/test_rates.py +0 -0
  124. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/test/test_types.py +0 -0
  125. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/validation/__init__.py +0 -0
  126. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/validation/rx_validator.py +0 -0
  127. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/validation/utils.py +0 -0
  128. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/validation/validate.py +0 -0
  129. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/validation/validate_mep.py +0 -0
  130. {osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/pyproject.toml +0 -0
{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8/OSBModelValidation.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: OSBModelValidation
3
- Version: 0.3.7
3
+ Version: 0.3.8
4
4
  Summary: Open Source Brain Model validation
5
5
  Home-page: https://github.com/OpenSourceBrain/osb-model-validation
6
6
  Author: Boris Marin, Padraig Gleeson
{osbmodelvalidation-0.3.7/OSBModelValidation.egg-info → osbmodelvalidation-0.3.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: OSBModelValidation
3
- Version: 0.3.7
3
+ Version: 0.3.8
4
4
  Summary: Open Source Brain Model validation
5
5
  Home-page: https://github.com/OpenSourceBrain/osb-model-validation
6
6
  Author: Boris Marin, Padraig Gleeson
{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getmoose.py RENAMED
@@ -3,7 +3,7 @@ from omv.common.inout import pip_install
3
3
 
4
4
  def install_moose(version):
5
5
  if not version:
6
- version = "4.0.0"
6
+ version = "4.0.0.dev20240411"
7
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  try:
8
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  pip_install("pymoose", version)
9
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  import moose
{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/getnrn.py RENAMED
@@ -10,7 +10,7 @@ from omv.engines.utils.wdir import working_dir
10
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  def install_neuron(version):
11
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  if not version:
12
12
  if sys.version_info.major == 3:
13
- version = "8.2.6" # for pynn 0.11.0
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+ version = "8.2.7" # for pynn 0.11.0
14
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  else:
15
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  version = "7.6"
16
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{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/neuron_.py RENAMED
@@ -85,6 +85,7 @@ class NeuronEngine(OMVEngine):
85
85
  inform("Checking whether %s is installed..." % NeuronEngine.name, indent=1)
86
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  try:
87
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  output = check_output(["nrniv", "--version"], verbosity=2)
88
+ output = output[output.index('NEURON'):]
88
89
  if is_verbose():
89
90
  inform(
90
91
  "%s is installed; env: %s"
{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/engines/utils/__init__.py RENAMED
@@ -10,11 +10,11 @@ def resolve_paths(path_s):
10
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  import glob
11
11
 
12
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  if PATH_DELIMITER in path_s:
13
- all = []
13
+ all_paths = []
14
14
  for p in path_s.split(PATH_DELIMITER):
15
15
  for g in glob.glob(p):
16
- all.append(g)
17
- path_s = all
16
+ all_paths.append(g)
17
+ path_s = all_paths
18
18
  else:
19
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  path_s = glob.glob(path_s)
20
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{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/omv/omv_util.py RENAMED
@@ -154,8 +154,8 @@ def main():
154
154
  ]:
155
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  installed_ver = False
156
156
  try:
157
- exec("import %s" % m)
158
- installed_ver = "v%s" % eval("%s.__version__" % m)
157
+ mod = __import__(m)
158
+ installed_ver = "v%s" % getattr(mod, "__version__", "unknown")
159
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  except Exception:
160
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  pass
161
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  inform(
{osbmodelvalidation-0.3.7 → osbmodelvalidation-0.3.8}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
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  name = OSBModelValidation
3
- version = 0.3.7
3
+ version = 0.3.8
4
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  author = Boris Marin, Padraig Gleeson
5
5
  author_email = borismarin@gmail.com
6
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  url = https://github.com/OpenSourceBrain/osb-model-validation