OSBModelValidation 0.2.19__tar.gz → 0.2.20__tar.gz

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Files changed (126) hide show
  1. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20/OSBModelValidation.egg-info}/PKG-INFO +2 -1
  2. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/requires.txt +1 -0
  3. {OSBModelValidation-0.2.19/OSBModelValidation.egg-info → osbmodelvalidation-0.2.20}/PKG-INFO +2 -1
  4. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuroml.py +4 -0
  5. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pyneuroml_.py +5 -0
  6. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/setup.cfg +2 -1
  7. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/LICENSE.lesser +0 -0
  8. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/MANIFEST.in +0 -0
  9. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/SOURCES.txt +0 -0
  10. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/dependency_links.txt +0 -0
  11. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/entry_points.txt +0 -0
  12. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/top_level.txt +0 -0
  13. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/README.md +0 -0
  14. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/__init__.py +0 -0
  15. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/__init__.py +0 -0
  16. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/activation.py +0 -0
  17. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/analyzer.py +0 -0
  18. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/dryrun.py +0 -0
  19. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/input_resistance.py +0 -0
  20. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/morphology.py +0 -0
  21. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/rates.py +0 -0
  22. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/resting.py +0 -0
  23. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/spikes.py +0 -0
  24. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/temperature.py +0 -0
  25. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/timeseries.py +0 -0
  26. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/utils/__init__.py +0 -0
  27. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/utils/filenode.py +0 -0
  28. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/analyzers/utils/timeseries.py +0 -0
  29. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/autogen.py +0 -0
  30. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/common/__init__.py +0 -0
  31. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/common/inout.py +0 -0
  32. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/__init__.py +0 -0
  33. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/arbor_.py +0 -0
  34. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/brian1.py +0 -0
  35. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/brian2_.py +0 -0
  36. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/eden_.py +0 -0
  37. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/engine.py +0 -0
  38. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/genesis.py +0 -0
  39. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getarbor.py +0 -0
  40. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getbrian1.py +0 -0
  41. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getbrian2.py +0 -0
  42. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/geteden.py +0 -0
  43. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getgenesis.py +0 -0
  44. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getjlems.py +0 -0
  45. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getjnml.py +0 -0
  46. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getlibsbml.py +0 -0
  47. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getmoose.py +0 -0
  48. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getnest.py +0 -0
  49. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getnetpyne.py +0 -0
  50. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getneuroconstruct.py +0 -0
  51. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getnml2.py +0 -0
  52. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getnrn.py +0 -0
  53. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getoctave.py +0 -0
  54. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getpylems.py +0 -0
  55. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getpyneuroml.py +0 -0
  56. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/getpynn.py +0 -0
  57. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jlems.py +0 -0
  58. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlbrian.py +0 -0
  59. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlbrian2.py +0 -0
  60. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromleden.py +0 -0
  61. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlmoose.py +0 -0
  62. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlnetpyne.py +0 -0
  63. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlnetpyne_np2.py +0 -0
  64. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlnetpyne_np4.py +0 -0
  65. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlnrn.py +0 -0
  66. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlpynnnrn.py +0 -0
  67. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlvalidate.py +0 -0
  68. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuromlvalidatev1.py +0 -0
  69. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/moose_.py +0 -0
  70. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/nestsli.py +0 -0
  71. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/netpyne_.py +0 -0
  72. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/netpyne__np2.py +0 -0
  73. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/netpyne__np4.py +0 -0
  74. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/neuron_.py +0 -0
  75. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/octave.py +0 -0
  76. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pylems.py +0 -0
  77. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pylemsnml2.py +0 -0
  78. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynest.py +0 -0
  79. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pyneuroconstruct.py +0 -0
  80. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pyneuromlvalidatesbml.py +0 -0
  81. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pyneuron.py +0 -0
  82. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynn.py +0 -0
  83. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynnbrian1.py +0 -0
  84. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynnbrian2.py +0 -0
  85. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynnnest.py +0 -0
  86. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynnneuroml.py +0 -0
  87. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pynnneuron.py +0 -0
  88. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/utils/__init__.py +0 -0
  89. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/utils/genesis_utils.g +0 -0
  90. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/utils/wdir.py +0 -0
  91. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/experiment.py +0 -0
  92. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/find_tests.py +0 -0
  93. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/omt_mep_parser.py +0 -0
  94. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/omv_util.py +0 -0
  95. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/parse_omt.py +0 -0
  96. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/mep.yaml +0 -0
  97. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/observable_datafile.yaml +0 -0
  98. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/observable_literal.yaml +0 -0
  99. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/observables.yaml +0 -0
  100. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/test/observable_datafile.yaml +0 -0
  101. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/test/observable_literal.1.yaml +0 -0
  102. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/base/test/observable_literal.3.yaml +0 -0
  103. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/expected.yaml +0 -0
  104. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/experiment.yaml +0 -0
  105. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/observable.yaml +0 -0
  106. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/protocol.yaml +0 -0
  107. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/protocol_properties.yaml +0 -0
  108. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/expected.1.yaml +0 -0
  109. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/expected.2.yaml +0 -0
  110. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/expected.3.yaml +0 -0
  111. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/expected.4.yaml +0 -0
  112. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/experiment.1.yaml +0 -0
  113. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/experiment.2.yaml +0 -0
  114. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/observable.yaml +0 -0
  115. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/protocol.1.yaml +0 -0
  116. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/schemata/types/test/protocol.2.yaml +0 -0
  117. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/tally.py +0 -0
  118. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/test/__init__.py +0 -0
  119. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/test/test_rates.py +0 -0
  120. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/test/test_types.py +0 -0
  121. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/validation/__init__.py +0 -0
  122. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/validation/rx_validator.py +0 -0
  123. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/validation/utils.py +0 -0
  124. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/validation/validate.py +0 -0
  125. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/validation/validate_mep.py +0 -0
  126. {OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/pyproject.toml +0 -0
{OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20/OSBModelValidation.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: OSBModelValidation
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- Version: 0.2.19
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+ Version: 0.2.20
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  Summary: Open Source Brain Model validation
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  Home-page: https://github.com/OpenSourceBrain/osb-model-validation
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  Author: Boris Marin, Padraig Gleeson
@@ -24,6 +24,7 @@ Requires-Dist: pyrx
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  Requires-Dist: pathlib; python_version < "3.4"
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  Requires-Dist: docopt
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  Requires-Dist: importlib-metadata; python_version < "3.8"
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+ Requires-Dist: setuptools
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  [![Continuous builds](https://github.com/OpenSourceBrain/osb-model-validation/actions/workflows/ci.yml/badge.svg)](https://github.com/OpenSourceBrain/osb-model-validation/actions/workflows/ci.yml)
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  [![PyPI](https://img.shields.io/pypi/v/OSBModelValidation)](https://pypi.org/project/OSBModelValidation/)
{OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/OSBModelValidation.egg-info/requires.txt RENAMED
@@ -2,6 +2,7 @@ PyYAML
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  numpy
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  pyrx
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  docopt
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+ setuptools
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  [:python_version < "3.4"]
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  pathlib
{OSBModelValidation-0.2.19/OSBModelValidation.egg-info → osbmodelvalidation-0.2.20}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: OSBModelValidation
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- Version: 0.2.19
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+ Version: 0.2.20
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  Summary: Open Source Brain Model validation
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  Home-page: https://github.com/OpenSourceBrain/osb-model-validation
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  Author: Boris Marin, Padraig Gleeson
@@ -24,6 +24,7 @@ Requires-Dist: pyrx
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  Requires-Dist: pathlib; python_version < "3.4"
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  Requires-Dist: docopt
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  Requires-Dist: importlib-metadata; python_version < "3.8"
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+ Requires-Dist: setuptools
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  [![Continuous builds](https://github.com/OpenSourceBrain/osb-model-validation/actions/workflows/ci.yml/badge.svg)](https://github.com/OpenSourceBrain/osb-model-validation/actions/workflows/ci.yml)
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  [![PyPI](https://img.shields.io/pypi/v/OSBModelValidation)](https://pypi.org/project/OSBModelValidation/)
{OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/jneuroml.py RENAMED
@@ -81,6 +81,10 @@ class JNeuroMLEngine(OMVEngine):
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  inform("Will fetch and install jNeuroML jar", indent=2)
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  install_jnml(version)
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+ if not JNeuroMLEngine.is_installed():
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+ inform("Failure to install, exiting", indent=1)
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+ exit(1)
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+
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  def run(self):
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  try:
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  inform(
{OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/omv/engines/pyneuroml_.py RENAMED
@@ -38,6 +38,11 @@ class PyNeuroMLEngine(OMVEngine):
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  inform("Will fetch and install the latest pyNeuroML", indent=2)
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  install_pynml(version)
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+ if not PyNeuroMLEngine.is_installed():
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+ inform("Failure to install, exiting", indent=1)
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+ exit(1)
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+
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+
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  def run(self):
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  try:
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  inform(
{OSBModelValidation-0.2.19 → osbmodelvalidation-0.2.20}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
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  [metadata]
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  name = OSBModelValidation
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- version = 0.2.19
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+ version = 0.2.20
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  author = Boris Marin, Padraig Gleeson
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  author_email = borismarin@gmail.com
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  url = https://github.com/OpenSourceBrain/osb-model-validation
@@ -28,6 +28,7 @@ install_requires =
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  pathlib; python_version<'3.4'
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  docopt
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  importlib-metadata; python_version<'3.8'
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+ setuptools
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  packages = find:
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  [options.packages.find]