NGPIris 5.4.2.dev1__tar.gz → 5.4.2.dev3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/cli/__init__.py +17 -4
  2. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hcp/hcp.py +8 -14
  3. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/PKG-INFO +1 -1
  4. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/PKG-INFO +1 -1
  5. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/pyproject.toml +1 -1
  6. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/LICENSE +0 -0
  7. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/MANIFEST.in +0 -0
  8. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/__init__.py +0 -0
  9. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hci/__init__.py +0 -0
  10. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hci/exceptions.py +0 -0
  11. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hci/hci.py +0 -0
  12. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hci/helpers.py +0 -0
  13. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hcp/__init__.py +0 -0
  14. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hcp/exceptions.py +0 -0
  15. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hcp/helpers.py +0 -0
  16. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/hcp/statistics.py +0 -0
  17. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/parse_credentials/__init__.py +0 -0
  18. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/parse_credentials/parse_credentials.py +0 -0
  19. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/utils/__init__.py +0 -0
  20. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris/utils/utils.py +0 -0
  21. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/SOURCES.txt +0 -0
  22. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/dependency_links.txt +0 -0
  23. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/entry_points.txt +0 -0
  24. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/requires.txt +0 -0
  25. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/NGPIris.egg-info/top_level.txt +0 -0
  26. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/README.md +0 -0
  27. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/IRIS_5_changelog.md +0 -0
  28. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/Makefile +0 -0
  29. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.cli.rst +0 -0
  30. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.hci.rst +0 -0
  31. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.hcp.rst +0 -0
  32. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.parse_credentials.rst +0 -0
  33. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.rst +0 -0
  34. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/NGPIris.utils.rst +0 -0
  35. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/Tutorial.md +0 -0
  36. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/conf.py +0 -0
  37. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/index.rst +0 -0
  38. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/make.bat +0 -0
  39. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/docs/modules.rst +0 -0
  40. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/setup.cfg +0 -0
  41. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/80MB_test_file +0 -0
  42. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/a folder of data/80MB_test_file_0 +0 -0
  43. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/a folder of data/80MB_test_file_1 +0 -0
  44. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/complete_creds_0.json +0 -0
  45. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/complete_creds_1.json +0 -0
  46. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/complete_creds_2.json +0 -0
  47. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/incomplete_creds_0.json +0 -0
  48. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/incomplete_creds_1.json +0 -0
  49. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/incomplete_creds_2.json +0 -0
  50. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/incomplete_creds_3.json +0 -0
  51. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/data/incomplete_creds_4.json +0 -0
  52. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/test_hci.py +0 -0
  53. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/test_hcp.py +0 -0
  54. {ngpiris-5.4.2.dev1 → ngpiris-5.4.2.dev3}/tests/test_parse_credentials.py +0 -0
@@ -41,19 +41,32 @@ def add_trailing_slash(path : str) -> str:
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  help = "Get the debug log for running a command",
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  is_flag = True
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  )
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+ @click.option(
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+ "-tc",
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+ "--transfer_config",
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+ help = "Use a custom transfer config for uploads or downloads",
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+ )
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  @click.version_option(package_name = "NGPIris")
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  @click.pass_context
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- def cli(context : Context, credentials : str, debug : bool):
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+ def cli(context : Context, credentials : str, debug : bool, transfer_config : str):
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  """
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  NGP Intelligence and Repository Interface Software, IRIS.
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  CREDENTIALS refers to the path to the JSON credentials file.
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  """
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+
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+ if transfer_config:
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+ context.ensure_object(dict)
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+ context.obj["hcph"] = HCPHandler(credentials, custom_config_path = transfer_config)
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+ else:
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+ context.ensure_object(dict)
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+ context.obj["hcph"] = HCPHandler(credentials)
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+
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  if debug:
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  set_stream_logger(name="")
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-
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- context.ensure_object(dict)
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- context.obj["hcph"] = HCPHandler(credentials)
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+ click.echo(
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+ context.obj["hcph"].transfer_config.__dict__
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+ )
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  @cli.command()
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  @click.argument("bucket")
@@ -507,26 +507,20 @@ class HCPHandler:
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  unit_scale = True,
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  desc = local_file_path
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  ) as pbar:
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- try:
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- self.s3_client.upload_file(
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- Filename = local_file_path,
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- Bucket = self.bucket_name,
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- Key = key,
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- Config = self.transfer_config,
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- Callback = lambda bytes_transferred : pbar.update(bytes_transferred)
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- )
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- except Exception as e:
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- print("Upload failed:", e)
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- else:
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- try:
522
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  self.s3_client.upload_file(
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  Filename = local_file_path,
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  Bucket = self.bucket_name,
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  Key = key,
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  Config = self.transfer_config,
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+ Callback = lambda bytes_transferred : pbar.update(bytes_transferred)
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  )
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- except Exception as e:
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- print("Upload failed:", e)
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+ else:
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+ self.s3_client.upload_file(
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+ Filename = local_file_path,
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+ Bucket = self.bucket_name,
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+ Key = key,
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+ Config = self.transfer_config,
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+ )
530
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531
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  @check_mounted
@@ -1,6 +1,6 @@
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1
  Metadata-Version: 2.4
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  Name: NGPIris
3
- Version: 5.4.2.dev1
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+ Version: 5.4.2.dev3
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  Author-email: Erik Brink <erik.brink@gu.se>, Isak Sylvin <isak.sylvin@gu.se>
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: NGPIris
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- Version: 5.4.2.dev1
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+ Version: 5.4.2.dev3
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  Author-email: Erik Brink <erik.brink@gu.se>, Isak Sylvin <isak.sylvin@gu.se>
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "NGPIris"
3
- version = "5.4.2.dev1"
3
+ version = "5.4.2.dev3"
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  readme = "README.md"
5
5
  dependencies = [
6
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  "requests >= 2.31.0",
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