NGPIris 5.2.2.dev4__tar.gz → 5.2.3.dev1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (130) hide show
  1. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/cli/__init__.py +10 -1
  2. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/hcp.py +1 -1
  3. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/PKG-INFO +1 -1
  4. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/PKG-INFO +1 -1
  5. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/pyproject.toml +1 -1
  6. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/LICENSE +0 -0
  7. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/MANIFEST.in +0 -0
  8. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/__init__.py +0 -0
  9. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hci/__init__.py +0 -0
  10. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hci/exceptions.py +0 -0
  11. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hci/hci.py +0 -0
  12. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hci/helpers.py +0 -0
  13. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/__init__.py +0 -0
  14. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/exceptions.py +0 -0
  15. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/helpers.py +0 -0
  16. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/statistics.py +0 -0
  17. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/parse_credentials/__init__.py +0 -0
  18. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/parse_credentials/parse_credentials.py +0 -0
  19. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/utils/__init__.py +0 -0
  20. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/utils/utils.py +0 -0
  21. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/SOURCES.txt +0 -0
  22. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/dependency_links.txt +0 -0
  23. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/entry_points.txt +0 -0
  24. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/requires.txt +0 -0
  25. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/top_level.txt +0 -0
  26. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/README.md +0 -0
  27. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/IRIS_5_changelog.md +0 -0
  28. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/Makefile +0 -0
  29. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.cli.rst +0 -0
  30. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.hci.rst +0 -0
  31. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.hcp.rst +0 -0
  32. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.parse_credentials.rst +0 -0
  33. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.rst +0 -0
  34. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/NGPIris.utils.rst +0 -0
  35. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/Tutorial.md +0 -0
  36. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/.DS_Store +0 -0
  37. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/IRIS_5_changelog.doctree +0 -0
  38. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.cli.doctree +0 -0
  39. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.doctree +0 -0
  40. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.hci.doctree +0 -0
  41. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.hcp.doctree +0 -0
  42. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.parse_credentials.doctree +0 -0
  43. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/NGPIris.utils.doctree +0 -0
  44. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/README.doctree +0 -0
  45. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/Tutorial.doctree +0 -0
  46. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/environment.pickle +0 -0
  47. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/index.doctree +0 -0
  48. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/doctrees/modules.doctree +0 -0
  49. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/.buildinfo +0 -0
  50. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/IRIS_5_changelog.html +0 -0
  51. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.cli.html +0 -0
  52. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.hci.html +0 -0
  53. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.hcp.html +0 -0
  54. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.html +0 -0
  55. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.parse_credentials.html +0 -0
  56. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/NGPIris.utils.html +0 -0
  57. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/README.html +0 -0
  58. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/Tutorial.html +0 -0
  59. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_downloads/ee00c4f6f22dc2671c766f728f00006f/credentials_template.json +0 -0
  60. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/cli.html +0 -0
  61. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hci/exceptions.html +0 -0
  62. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hci/hci.html +0 -0
  63. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hci/helpers.html +0 -0
  64. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hcp/exceptions.html +0 -0
  65. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hcp/hcp.html +0 -0
  66. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hcp/helpers.html +0 -0
  67. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/hcp/statistics.html +0 -0
  68. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/parse_credentials/parse_credentials.html +0 -0
  69. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/NGPIris/utils/utils.html +0 -0
  70. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_modules/index.html +0 -0
  71. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/IRIS_5_changelog.md.txt +0 -0
  72. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.cli.rst.txt +0 -0
  73. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.hci.rst.txt +0 -0
  74. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.hcp.rst.txt +0 -0
  75. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.parse_credentials.rst.txt +0 -0
  76. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.rst.txt +0 -0
  77. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/NGPIris.utils.rst.txt +0 -0
  78. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/README.md.txt +0 -0
  79. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/Tutorial.md.txt +0 -0
  80. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/index.rst.txt +0 -0
  81. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_sources/modules.rst.txt +0 -0
  82. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/alabaster.css +0 -0
  83. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/basic.css +0 -0
  84. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/custom.css +0 -0
  85. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/debug.css +0 -0
  86. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/doctools.js +0 -0
  87. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/documentation_options.js +0 -0
  88. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/file.png +0 -0
  89. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/language_data.js +0 -0
  90. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/minus.png +0 -0
  91. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/plus.png +0 -0
  92. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/pygments.css +0 -0
  93. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/scripts/furo-extensions.js +0 -0
  94. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/scripts/furo.js +0 -0
  95. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/scripts/furo.js.LICENSE.txt +0 -0
  96. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/scripts/furo.js.map +0 -0
  97. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/searchtools.js +0 -0
  98. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/skeleton.css +0 -0
  99. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/sphinx_highlight.js +0 -0
  100. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/styles/furo-extensions.css +0 -0
  101. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/styles/furo-extensions.css.map +0 -0
  102. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/styles/furo.css +0 -0
  103. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/_static/styles/furo.css.map +0 -0
  104. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/genindex.html +0 -0
  105. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/index.html +0 -0
  106. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/modules.html +0 -0
  107. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/objects.inv +0 -0
  108. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/py-modindex.html +0 -0
  109. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/search.html +0 -0
  110. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/_build/html/searchindex.js +0 -0
  111. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/conf.py +0 -0
  112. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/index.rst +0 -0
  113. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/make.bat +0 -0
  114. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/modules.rst +0 -0
  115. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/setup.cfg +0 -0
  116. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/.DS_Store +0 -0
  117. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/80MB_test_file +0 -0
  118. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/a folder of data/80MB_test_file_0 +0 -0
  119. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/a folder of data/80MB_test_file_1 +0 -0
  120. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/complete_creds_0.json +0 -0
  121. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/complete_creds_1.json +0 -0
  122. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/complete_creds_2.json +0 -0
  123. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/incomplete_creds_0.json +0 -0
  124. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/incomplete_creds_1.json +0 -0
  125. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/incomplete_creds_2.json +0 -0
  126. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/incomplete_creds_3.json +0 -0
  127. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/data/incomplete_creds_4.json +0 -0
  128. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/test_hci.py +0 -0
  129. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/test_hcp.py +0 -0
  130. {ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/tests/test_parse_credentials.py +0 -0
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/cli/__init__.py RENAMED
@@ -3,6 +3,7 @@ import click
3
3
  from click.core import Context
4
4
  from json import dump
5
5
  from pathlib import Path
6
+ from boto3 import set_stream_logger
6
7
  from botocore.paginate import PageIterator, Paginator
7
8
  from typing import Any, Generator
8
9
  from os import get_terminal_size
@@ -66,14 +67,22 @@ def add_trailing_slash(path : str) -> str:
66
67
 
67
68
  @click.group()
68
69
  @click.argument("credentials")
70
+ @click.option(
71
+ "--debug",
72
+ help = "Get the debug log for running a command",
73
+ is_flag = True
74
+ )
69
75
  @click.version_option(package_name = "NGPIris")
70
76
  @click.pass_context
71
- def cli(context : Context, credentials : str):
77
+ def cli(context : Context, credentials : str, debug : bool):
72
78
  """
73
79
  NGP Intelligence and Repository Interface Software, IRIS.
74
80
 
75
81
  CREDENTIALS refers to the path to the JSON credentials file.
76
82
  """
83
+ if debug:
84
+ set_stream_logger(name="")
85
+
77
86
  context.ensure_object(dict)
78
87
  context.obj["hcph"] = HCPHandler(credentials)
79
88
 
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris/hcp/hcp.py RENAMED
@@ -80,7 +80,7 @@ class HCPHandler:
80
80
  }
81
81
 
82
82
  self.tenant = None
83
- for endpoint_format_string in ["https://{}.ngp-fs1000.vgregion.se", "https://{}.ngp-fs2000.vgregion.se", "https://{}.ngp-fs3000.vgregion.se", "https://{}.vgregion.sjunet.org"]:
83
+ for endpoint_format_string in ["https://{}.ngp-fs1000.vgregion.se", "https://{}.ngp-fs2000.vgregion.se", "https://{}.ngp-fs3000.vgregion.se", "https://{}.hcp1.vgregion.se", "https://{}.vgregion.sjunet.org"]:
84
84
  tenant_parse = parse(endpoint_format_string, self.endpoint)
85
85
  if type(tenant_parse) is Result:
86
86
  tenant = str(tenant_parse[0])
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/NGPIris.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: NGPIris
3
- Version: 5.2.2.dev4
3
+ Version: 5.2.3.dev1
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4
  Author-email: Erik Brink <erik.brink@gu.se>, Isak Sylvin <isak.sylvin@gu.se>
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5
  Description-Content-Type: text/markdown
6
6
  License-File: LICENSE
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
2
2
  Name: NGPIris
3
- Version: 5.2.2.dev4
3
+ Version: 5.2.3.dev1
4
4
  Author-email: Erik Brink <erik.brink@gu.se>, Isak Sylvin <isak.sylvin@gu.se>
5
5
  Description-Content-Type: text/markdown
6
6
  License-File: LICENSE
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "NGPIris"
3
- version = "5.2.2.dev4"
3
+ version = "5.2.3.dev1"
4
4
  readme = "README.md"
5
5
  dependencies = [
6
6
  "requests >= 2.31.0",
{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/LICENSE RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/MANIFEST.in RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/README.md RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/Makefile RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/conf.py RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/docs/make.bat RENAMED
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{ngpiris-5.2.2.dev4 → ngpiris-5.2.3.dev1}/setup.cfg RENAMED
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