MultiMM 1.0.3__tar.gz → 1.0.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/PKG-INFO +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/PKG-INFO +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/setup.py +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/simulation/__init__.py +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/simulation/initial_structure_tools.py +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/simulation/nucleosome_interpolation.py +3 -3
- {multimm-1.0.3 → multimm-1.0.5}/simulation/plots.py +1 -1
- {multimm-1.0.3 → multimm-1.0.5}/simulation/run.py +5 -5
- {multimm-1.0.3 → multimm-1.0.5}/LICENSE +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/SOURCES.txt +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/dependency_links.txt +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/entry_points.txt +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/requires.txt +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/MultiMM.egg-info/top_level.txt +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/README.md +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/setup.cfg +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/simulation/args_definition.py +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/simulation/utils.py +0 -0
- {multimm-1.0.3 → multimm-1.0.5}/simulation/validation.py +0 -0
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@@ -6,7 +6,7 @@ with open('README.md', 'r', encoding='utf-8') as f:
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setup(
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name='MultiMM', # Package name
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version='1.0.
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version='1.0.5', # Version of the software
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description='A tool for chromatin modeling from nucleosomes to chromosomal territories.',
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long_description=long_description,
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long_description_content_type='text/markdown',
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import matplotlib.pyplot as plt
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from hilbertcurve.hilbertcurve import HilbertCurve
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import warnings
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from utils import *
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from .utils import *
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warnings.simplefilter(action='ignore', category=FutureWarning)
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subcomp_dict={-2:'B1',-1:'B2',0:'O',1:'A1',2:'A2'}
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#########################################################
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import numpy as np
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from utils import *
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from initial_structure_tools import *
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from plots import *
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from .utils import *
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from .initial_structure_tools import *
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from .plots import *
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from tqdm import tqdm
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from sys import stdout
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import openmm as mm
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from openmm.app import PDBxFile, ForceField, Simulation, DCDReporter, StateDataReporter
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from initial_structure_tools import *
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from utils import *
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from plots import *
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from args_definition import *
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from nucleosome_interpolation import *
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from .initial_structure_tools import *
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from .utils import *
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from .plots import *
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from .args_definition import *
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from .nucleosome_interpolation import *
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import time
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import os
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