MNutils 1.2.1__tar.gz → 1.2.2__tar.gz

{mnutils-1.2.1 → mnutils-1.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: MNutils
-Version: 1.2.1
+Version: 1.2.2
 Summary: Utility functions for multinuclear MR data processing
 Keywords: mri,mrs,xarray,spectroscopy,nmr
 Author: Sebastian Bauer
@@ -12,7 +12,6 @@ Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: 3.14
 Classifier: Intended Audience :: Science/Research
 Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
-Classifier: License :: OSI Approved :: BSD License
 Classifier: Operating System :: OS Independent
 Classifier: Framework :: Jupyter
 Requires-Dist: dcm2niiw>=0.1.5

{mnutils-1.2.1 → mnutils-1.2.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "MNutils"
-version = "1.2.1"
+version = "1.2.2"
 description = "Utility functions for multinuclear MR data processing"
 readme = "README.md"
 license = "BSD-3-Clause"
@@ -18,7 +18,6 @@ classifiers = [
     "Programming Language :: Python :: 3.14",
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Medical Science Apps.",
-    "License :: OSI Approved :: BSD License",
     "Operating System :: OS Independent",
     "Framework :: Jupyter",
 ]

{mnutils-1.2.1 → mnutils-1.2.2}/pyproject.toml.orig

@@ -1,6 +1,6 @@
 [project]
 name = "MNutils"
-version = "1.2.1"
+version = "1.2.2"
 
 authors = [
     {name = "Sebastian Bauer", email = "28663646+bastigw@users.noreply.github.com"}
@@ -18,7 +18,6 @@ classifiers = [
     "Programming Language :: Python :: 3.14",
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Medical Science Apps.",
-    "License :: OSI Approved :: BSD License",
     "Operating System :: OS Independent",
     "Framework :: Jupyter",
 ]

{mnutils-1.2.1 → mnutils-1.2.2}/src/mnutils/utils/file_helpers.py

@@ -66,9 +66,13 @@ def get_all_dicom_series_ids(data_folder: str | Path) -> tuple[list[int], list[i
     series_numbers.sort()
     logger.debug(f"Found series IDs: {series_numbers}")
 
-    # This should now be an increasing list of numbers without any missing ones
-    # Briefly check if any indices are missing and raise.
-    missing = sorted(set(range(series_numbers[0], series_numbers[-1] + 1)) - set(series_numbers))
+    # Only flag gaps within the low, dense protocol-step range (series <= 99).
+    # Series >= 100 are reformats/resaves with sparse-by-design numbering
+    # (e.g. 500/501, 40003) and must never be flagged as "missing".
+    missing = []
+    if series_numbers[0] <= 99:
+        dense_range = range(series_numbers[0], min(series_numbers[-1], 99) + 1)
+        missing = sorted(set(dense_range) - set(series_numbers))
     if missing:
         logger.error(f"Missing series IDs: {missing}. DOUBLE CHECK DATA FOLDER!")