PyPI - MEDfl - Versions diffs - 0.1.19__tar.gz → 0.1.20__tar.gz - Mend

MEDfl 0.1.19tar.gz → 0.1.20tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (410) hide show

{Medfl-0.1.19 → Medfl-0.1.20}/MEDfl.egg-info/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: Medfl
-Version: 0.1.19
+Version: 0.1.20
 Summary: Python Open-source package for simulating federated learning and differential privacy
 Home-page: https://github.com/HaithemLamri/MEDfl
 Author: MEDomics consortium

{Medfl-0.1.19 → Medfl-0.1.20}/Medfl/NetManager/network.py RENAMED Viewed

@@ -35,7 +35,7 @@ class Network:
         db_manager = DatabaseManager() ;
         db_manager.connect() ;
-        self.eng = db_manager.get_connection() ;
+        self.eng = db_manager.get_connection()
     def validate(self):
         """Validate name"""

{Medfl-0.1.19 → Medfl-0.1.20}/Medfl/NetManager/node.py RENAMED Viewed

@@ -1,10 +1,9 @@
 import pandas as pd
-from scripts.base import *
 from .net_helper import *
 from .net_manager_queries import *
 from Medfl.LearningManager.utils import params
+from Medfl.NetManager.database_connector import DatabaseManager
 class Node:
     """
@@ -17,7 +16,7 @@ class Node:
     """
     def __init__(
-        self, name: str, train: int, test_fraction: float = 0.2, engine=my_eng
+        self, name: str, train: int, test_fraction: float = 0.2, engine=None
     ):
         """
         Initialize a Node instance.
@@ -30,7 +29,11 @@ class Node:
         self.name = name
         self.train = train
         self.test_fraction = 1.0 if self.train == 0 else test_fraction
-        self.engine = engine
+        db_manager = DatabaseManager() ;
+        db_manager.connect() ;
+        self.engine = db_manager.get_connection()
     def validate(self):
         """Validate name, train, test_fraction"""

{Medfl-0.1.19 → Medfl-0.1.20}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: Medfl
-Version: 0.1.19
+Version: 0.1.20
 Summary: Python Open-source package for simulating federated learning and differential privacy
 Home-page: https://github.com/HaithemLamri/MEDfl
 Author: MEDomics consortium

{Medfl-0.1.19 → Medfl-0.1.20}/notebooks/banchmarking/MEDfl_benchmarks.ipynb RENAMED Viewed

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -19,7 +19,33 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 9,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "getting connection\n"
+     ]
+    }
+   ],
+   "source": [
+    "from Medfl.LearningManager.utils import *\n",
+    "from Medfl.NetManager.database_connector import DatabaseManager\n",
+    "\n",
+    "set_db_config('../../scripts/config.ini')\n",
+    "\n",
+    "db_manager = DatabaseManager()\n",
+    "db_manager.connect()\n",
+    "db_manager.get_connection()\n",
+    "\n",
+    "print('getting connection')\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
    "metadata": {},
    "outputs": [
     {
@@ -29,7 +55,7 @@
      "traceback": [
       "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
       "\u001b[1;31mKeyError\u001b[0m                                  Traceback (most recent call last)",
-      "Cell \u001b[1;32mIn[5], line 16\u001b[0m\n\u001b[0;32m     11\u001b[0m \u001b[39mimport\u001b[39;00m \u001b[39mtorch\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnn\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mfunctional\u001b[39;00m \u001b[39mas\u001b[39;00m \u001b[39mF\u001b[39;00m\n\u001b[0;32m     14\u001b[0m \u001b[39m## MedFL Imports \u001b[39;00m\n\u001b[0;32m     15\u001b[0m \u001b[39m## Network Manager Imports \u001b[39;00m\n\u001b[1;32m---> 16\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnode\u001b[39;00m \u001b[39mimport\u001b[39;00m Node\n\u001b[0;32m     17\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnetwork\u001b[39;00m \u001b[39mimport\u001b[39;00m Network\n\u001b[0;32m     18\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mdataset\u001b[39;00m \u001b[39mimport\u001b[39;00m DataSet\n",
+      "Cell \u001b[1;32mIn[10], line 16\u001b[0m\n\u001b[0;32m     11\u001b[0m \u001b[39mimport\u001b[39;00m \u001b[39mtorch\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnn\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mfunctional\u001b[39;00m \u001b[39mas\u001b[39;00m \u001b[39mF\u001b[39;00m\n\u001b[0;32m     14\u001b[0m \u001b[39m## MedFL Imports \u001b[39;00m\n\u001b[0;32m     15\u001b[0m \u001b[39m## Network Manager Imports \u001b[39;00m\n\u001b[1;32m---> 16\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnode\u001b[39;00m \u001b[39mimport\u001b[39;00m Node\n\u001b[0;32m     17\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mnetwork\u001b[39;00m \u001b[39mimport\u001b[39;00m Network\n\u001b[0;32m     18\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mMedfl\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mNetManager\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mdataset\u001b[39;00m \u001b[39mimport\u001b[39;00m DataSet\n",
       "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python39\\site-packages\\Medfl\\NetManager\\node.py:3\u001b[0m\n\u001b[0;32m      1\u001b[0m \u001b[39mimport\u001b[39;00m \u001b[39mpandas\u001b[39;00m \u001b[39mas\u001b[39;00m \u001b[39mpd\u001b[39;00m\n\u001b[1;32m----> 3\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39mscripts\u001b[39;00m\u001b[39m.\u001b[39;00m\u001b[39mbase\u001b[39;00m \u001b[39mimport\u001b[39;00m \u001b[39m*\u001b[39m\n\u001b[0;32m      4\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39m.\u001b[39;00m\u001b[39mnet_helper\u001b[39;00m \u001b[39mimport\u001b[39;00m \u001b[39m*\u001b[39m\n\u001b[0;32m      5\u001b[0m \u001b[39mfrom\u001b[39;00m \u001b[39m.\u001b[39;00m\u001b[39mnet_manager_queries\u001b[39;00m \u001b[39mimport\u001b[39;00m \u001b[39m*\u001b[39m\n",
       "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python39\\site-packages\\scripts\\base.py:16\u001b[0m\n\u001b[0;32m     14\u001b[0m config \u001b[39m=\u001b[39m ConfigParser()\n\u001b[0;32m     15\u001b[0m config\u001b[39m.\u001b[39mread(config_file_path)\n\u001b[1;32m---> 16\u001b[0m mysql_config \u001b[39m=\u001b[39m config[\u001b[39m'\u001b[39;49m\u001b[39mmysql\u001b[39;49m\u001b[39m'\u001b[39;49m]\n\u001b[0;32m     20\u001b[0m connection_string \u001b[39m=\u001b[39m (\n\u001b[0;32m     21\u001b[0m     \u001b[39mf\u001b[39m\u001b[39m\"\u001b[39m\u001b[39mmysql+mysqlconnector://\u001b[39m\u001b[39m{\u001b[39;00mmysql_config[\u001b[39m'\u001b[39m\u001b[39muser\u001b[39m\u001b[39m'\u001b[39m]\u001b[39m}\u001b[39;00m\u001b[39m:\u001b[39m\u001b[39m{\u001b[39;00mmysql_config[\u001b[39m'\u001b[39m\u001b[39mpassword\u001b[39m\u001b[39m'\u001b[39m]\u001b[39m}\u001b[39;00m\u001b[39m@\u001b[39m\u001b[39m\"\u001b[39m\n\u001b[0;32m     22\u001b[0m     \u001b[39mf\u001b[39m\u001b[39m\"\u001b[39m\u001b[39m{\u001b[39;00mmysql_config[\u001b[39m'\u001b[39m\u001b[39mhost\u001b[39m\u001b[39m'\u001b[39m]\u001b[39m}\u001b[39;00m\u001b[39m:\u001b[39m\u001b[39m{\u001b[39;00mmysql_config[\u001b[39m'\u001b[39m\u001b[39mport\u001b[39m\u001b[39m'\u001b[39m]\u001b[39m}\u001b[39;00m\u001b[39m/\u001b[39m\u001b[39m{\u001b[39;00mmysql_config[\u001b[39m'\u001b[39m\u001b[39mdatabase\u001b[39m\u001b[39m'\u001b[39m]\u001b[39m}\u001b[39;00m\u001b[39m\"\u001b[39m\n\u001b[0;32m     23\u001b[0m )\n\u001b[0;32m     25\u001b[0m eng \u001b[39m=\u001b[39m create_engine(\n\u001b[0;32m     26\u001b[0m     connection_string,\n\u001b[0;32m     27\u001b[0m     execution_options\u001b[39m=\u001b[39m{\u001b[39m\"\u001b[39m\u001b[39mautocommit\u001b[39m\u001b[39m\"\u001b[39m: \u001b[39mTrue\u001b[39;00m},\n\u001b[0;32m     28\u001b[0m )\n",
       "File \u001b[1;32mc:\\Python39\\lib\\configparser.py:960\u001b[0m, in \u001b[0;36mRawConfigParser.__getitem__\u001b[1;34m(self, key)\u001b[0m\n\u001b[0;32m    958\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39m__getitem__\u001b[39m(\u001b[39mself\u001b[39m, key):\n\u001b[0;32m    959\u001b[0m     \u001b[39mif\u001b[39;00m key \u001b[39m!=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mdefault_section \u001b[39mand\u001b[39;00m \u001b[39mnot\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mhas_section(key):\n\u001b[1;32m--> 960\u001b[0m         \u001b[39mraise\u001b[39;00m \u001b[39mKeyError\u001b[39;00m(key)\n\u001b[0;32m    961\u001b[0m     \u001b[39mreturn\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_proxies[key]\n",
@@ -57,7 +83,7 @@
     "from Medfl.NetManager.network import Network\n",
     "from Medfl.NetManager.dataset import DataSet\n",
     "from Medfl.NetManager.flsetup import FLsetup\n",
-    "from Medfl.NetManager.database_connector import DatabaseManager\n",
+    "\n",
     "# flower imports \n",
     "import flwr as fl\n",
     "\n",
@@ -588,13 +614,7 @@
     "                break\n",
     "            # Create the MEDfl pipeline for each config\n",
     "\n",
-    "            set_db_config('../../scripts/config.ini')\n",
-    "\n",
-    "            db_manager = DatabaseManager()\n",
-    "            db_manager.connect()\n",
-    "            db_manager.get_connection()\n",
-    "\n",
-    "            print('getting connection')\n",
+    "            \n",
     "\n",
     "            db_manager.create_MEDfl_db(path_to_csv=\"../data/masterDataSet/Mimic_ouael.csv\")\n",
     "\n",

{Medfl-0.1.19 → Medfl-0.1.20}/setup.py RENAMED Viewed

@@ -14,7 +14,7 @@ with open('requirements.txt') as f:
 setup(
     name="Medfl",
-    version="0.1.19",
+    version="0.1.20",
     author="MEDomics consortium",
     author_email="medomics.info@gmail.com",
     description="Python Open-source package for simulating federated learning and differential privacy",

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