MDAnalysis 2.6.0__tar.gz → 2.6.1__tar.gz

{MDAnalysis-2.6.0 → MDAnalysis-2.6.1}/AUTHORS

@@ -220,6 +220,7 @@ Chronological list of authors
   - Mohit Kumar
   - Shubham Kumar
   - Zaheer Timol
+  - Geongi Moon
 
 External code
 -------------

{MDAnalysis-2.6.0 → MDAnalysis-2.6.1}/CHANGELOG

@@ -13,11 +13,31 @@ The rules for this file:
   * release numbers follow "Semantic Versioning" http://semver.org
 
 ------------------------------------------------------------------------------
+28/08/23 IAlibay, hmacdope, pillose, jaclark5, tylerjereddy
+
+ * 2.6.1
+
+Fixes
+  * Fix Atom type guessing error (PR #4168, Issue #4167)
+
+Enhancements
+
+Changes
+  * Reverts PR #4108, builds are now again made using the oldest
+    supported Python version.
+  * NumPy `in1d` replaced with `isin` in preparation for NumPy
+    `2.0` (PR #4255)
+  * Update documentation for SurvivalProbabilty to be more clear
+    (Issue #4247)
+  * Cython DEF statments have been replaced with compile time integer constants
+    as DEF is deprecated as of Cython>=3.0 (Issue #4237, PR #4246)
+
+Deprecations
+
 
 08/15/23 IAlibay, jaclark5, MohitKumar020291, orionarcher, xhgchen,
          ztimol, orbeckst
 
-
  * 2.6.0
 
 Fixes

{MDAnalysis-2.6.0 → MDAnalysis-2.6.1}/MDAnalysis/analysis/align.py

@@ -1437,7 +1437,7 @@ def get_matching_atoms(ag1, ag2, tol_mass=0.1, strict=False, match_atoms=True):
                 good = ag.residues.resids[match_mask]  # resid for each residue
                 resids = ag.resids                     # resid for each atom
                 # boolean array for all matching atoms
-                ix_good = np.in1d(resids, good)
+                ix_good = np.isin(resids, good)
                 return ag[ix_good]
 
             _ag1 = get_atoms_byres(ag1)