M3Drop 0.4.56__tar.gz → 0.4.57__tar.gz

{m3drop-0.4.56 → m3drop-0.4.57/M3Drop.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: M3Drop
-Version: 0.4.56
+Version: 0.4.57
 Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
 Home-page: https://github.com/PragalvhaSharma/m3DropNew
 Author: Tallulah Andrews

{m3drop-0.4.56/M3Drop.egg-info → m3drop-0.4.57}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: M3Drop
-Version: 0.4.56
+Version: 0.4.57
 Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
 Home-page: https://github.com/PragalvhaSharma/m3DropNew
 Author: Tallulah Andrews

{m3drop-0.4.56 → m3drop-0.4.57}/m3Drop/NormalizationCPU.py

@@ -115,7 +115,7 @@ def NBumiPearsonResidualsCombinedCPU(
     else:
         sampling_rate = TARGET_SAMPLES / total_points
         
-    print(f"   > Visualization Sampling Rate: {sampling_rate*100:.4f}% (Target: {TARGET_SAMPLES:,} points)")
+    print(f"Phase [1/2]: Visualization Sampling Rate: {sampling_rate*100:.4f}% (Target: {TARGET_SAMPLES:,} points)")
 
     # 2. Accumulators (Numpy Arrays - Small memory footprint)
     acc_raw_sum    = np.zeros(ng_filtered, dtype=np.float64)
@@ -256,10 +256,10 @@ def NBumiPearsonResidualsCombinedCPU(
             flat_approx = np.array([])
             flat_full = np.array([])
             
-        print(f"   > Samples Collected: {len(flat_approx):,} points")
+        print(f"Phase [Viz]: Samples Collected... n = {len(flat_approx):,}")
 
         # --- FILE 1: SUMMARY (1080p) ---
-        print(f"   > Saving Summary Plot: {plot_summary_filename}")
+        print(f"Saving Summary Plot to {plot_summary_filename}")
         fig1, ax1 = plt.subplots(1, 2, figsize=(16, 7))
         
         # Plot 1: Variance Stabilization
@@ -299,7 +299,7 @@ def NBumiPearsonResidualsCombinedCPU(
         plt.close()
 
         # --- FILE 2: DETAIL (4K) ---
-        print(f"   > Saving Detail Plot: {plot_detail_filename}")
+        print(f"Saving plot detail plot to: {plot_detail_filename}")
         fig2, ax2 = plt.subplots(figsize=(20, 11))
         
         if len(flat_approx) > 0:

{m3drop-0.4.56 → m3drop-0.4.57}/m3Drop/NormalizationGPU.py

@@ -116,7 +116,7 @@ def NBumiPearsonResidualsCombinedGPU(
     else:
         sampling_rate = TARGET_SAMPLES / total_points
         
-    print(f"   > Visualization Sampling Rate: {sampling_rate*100:.4f}% (Target: {TARGET_SAMPLES:,} points)")
+    print(f"Phase [1/2]: Visualization Sampling Rate: {sampling_rate*100:.4f}% (Target: {TARGET_SAMPLES:,} points)")
 
     # 2. Accumulators for Plot 1 (Variance) - EXACT MATH
     acc_raw_sum = cupy.zeros(ng_filtered, dtype=cupy.float64)
@@ -289,10 +289,10 @@ def NBumiPearsonResidualsCombinedGPU(
             flat_approx = np.array([])
             flat_full = np.array([])
             
-        print(f"   > Samples Collected: {len(flat_approx):,} points")
+        print(f"Phase [Viz]: Samples Collected... n = {len(flat_approx):,}")
 
         # --- FILE 1: SUMMARY (1080p) ---
-        print(f"   > Saving Summary Plot: {plot_summary_filename}")
+        print(f"Saving Summary Plot to {plot_summary_filename}")
         fig1, ax1 = plt.subplots(1, 2, figsize=(16, 7))
         
         # Plot 1: Variance Stabilization
@@ -341,7 +341,7 @@ def NBumiPearsonResidualsCombinedGPU(
         plt.close()
 
         # --- FILE 2: DETAIL (4K) ---
-        print(f"   > Saving Detail Plot: {plot_detail_filename}")
+        print(f"Saving plot detail plot to: {plot_detail_filename}")
         fig2, ax2 = plt.subplots(figsize=(20, 11))
         
         if len(flat_approx) > 0:
@@ -367,3 +367,4 @@ def NBumiPearsonResidualsCombinedGPU(
 
     if hasattr(adata_in, "file") and adata_in.file is not None: adata_in.file.close()
     print(f"Total time: {time.perf_counter() - start_time:.2f} seconds.\n")
+

{m3drop-0.4.56 → m3drop-0.4.57}/setup.py

@@ -5,7 +5,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
 
 setuptools.setup(
     name="M3Drop",  # Name for pip (pip install M3Drop)
-    version="0.4.56",
+    version="0.4.57",
     author="Tallulah Andrews",
     author_email="tandrew6@uwo.ca",
     description="A Python implementation of the M3Drop single-cell RNA-seq analysis tool.",