M3Drop 0.4.50__tar.gz → 0.4.52__tar.gz

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Files changed (20) hide show
  1. {m3drop-0.4.50 → m3drop-0.4.52/M3Drop.egg-info}/PKG-INFO +1 -1
  2. {m3drop-0.4.50/M3Drop.egg-info → m3drop-0.4.52}/PKG-INFO +1 -1
  3. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/NormalizationGPU.py +5 -3
  4. {m3drop-0.4.50 → m3drop-0.4.52}/setup.py +1 -1
  5. {m3drop-0.4.50 → m3drop-0.4.52}/LICENSE +0 -0
  6. {m3drop-0.4.50 → m3drop-0.4.52}/M3Drop.egg-info/SOURCES.txt +0 -0
  7. {m3drop-0.4.50 → m3drop-0.4.52}/M3Drop.egg-info/dependency_links.txt +0 -0
  8. {m3drop-0.4.50 → m3drop-0.4.52}/M3Drop.egg-info/requires.txt +0 -0
  9. {m3drop-0.4.50 → m3drop-0.4.52}/M3Drop.egg-info/top_level.txt +0 -0
  10. {m3drop-0.4.50 → m3drop-0.4.52}/README.md +0 -0
  11. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/ControlDeviceCPU.py +0 -0
  12. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/ControlDeviceGPU.py +0 -0
  13. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/CoreCPU.py +0 -0
  14. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/CoreGPU.py +0 -0
  15. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/DiagnosticsCPU.py +0 -0
  16. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/DiagnosticsGPU.py +0 -0
  17. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/NormalizationCPU.py +0 -0
  18. {m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/__init__.py +0 -0
  19. {m3drop-0.4.50 → m3drop-0.4.52}/pyproject.toml +0 -0
  20. {m3drop-0.4.50 → m3drop-0.4.52}/setup.cfg +0 -0
{m3drop-0.4.50 → m3drop-0.4.52/M3Drop.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: M3Drop
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- Version: 0.4.50
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+ Version: 0.4.52
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  Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
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  Home-page: https://github.com/PragalvhaSharma/m3DropNew
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  Author: Tallulah Andrews
{m3drop-0.4.50/M3Drop.egg-info → m3drop-0.4.52}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: M3Drop
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- Version: 0.4.50
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+ Version: 0.4.52
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  Summary: A Python implementation of the M3Drop single-cell RNA-seq analysis tool.
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  Home-page: https://github.com/PragalvhaSharma/m3DropNew
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  Author: Tallulah Andrews
{m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/NormalizationGPU.py RENAMED
@@ -187,9 +187,11 @@ def NBumiPearsonResidualsCombinedGPU(
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  n_samples_chunk = int(chunk_total_items * sampling_rate)
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  if n_samples_chunk > 0:
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- # Index Sampling: Zero VRAM overhead compared to Masking
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- # Use flatten indices
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- sample_indices = cupy.random.choice(chunk_total_items, size=n_samples_chunk, replace=False)
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+ # [CRITICAL FIX] Use randint (with replacement) instead of choice(replace=False).
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+ # 'choice' with replace=False tries to allocate a permutation of the ENTIRE chunk (3GB+).
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+ # 'randint' only allocates the indices we need (KB).
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+ # Given the huge population (300M+) and small sample (100k+), collisions are statistically negligible.
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+ sample_indices = cupy.random.randint(0, int(chunk_total_items), size=n_samples_chunk)
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  else:
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  sample_indices = None
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{m3drop-0.4.50 → m3drop-0.4.52}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
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  setuptools.setup(
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  name="M3Drop", # Name for pip (pip install M3Drop)
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- version="0.4.50",
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+ version="0.4.52",
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  author="Tallulah Andrews",
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  author_email="tandrew6@uwo.ca",
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  description="A Python implementation of the M3Drop single-cell RNA-seq analysis tool.",
{m3drop-0.4.50 → m3drop-0.4.52}/LICENSE RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/README.md RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/CoreCPU.py RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/CoreGPU.py RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/m3Drop/__init__.py RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/pyproject.toml RENAMED
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{m3drop-0.4.50 → m3drop-0.4.52}/setup.cfg RENAMED
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