LynseDB 0.0.1__tar.gz

lynsedb-0.0.1/LICENSE

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lynsedb-0.0.1/LynseDB.egg-info/PKG-INFO

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+Metadata-Version: 2.1
+Name: LynseDB
+Version: 0.0.1
+Summary: A pure Python-implemented, lightweight, server-optional, multi-end compatible, vector database deployable locally or remotely.
+Home-page: https://github.com/BirchKwok/MinVectorDB
+Author: Birch Kwok
+Author-email: birchkwok@gmail.com
+Keywords: vector database
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Software Development
+Classifier: Topic :: Scientific/Engineering
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy>=1.17.0
+Requires-Dist: spinesUtils>=0.4.1
+Requires-Dist: msgpack>=1.0.2
+Requires-Dist: scikit-learn>=1.0.0
+Requires-Dist: cloudpickle>=2.0.0
+Requires-Dist: numexpr>=2.7.3
+Requires-Dist: pyroaring>=0.4.5
+Requires-Dist: jax>=0.4.25
+Requires-Dist: jaxlib>=0.4.25
+Requires-Dist: flask>=2.0.1
+Requires-Dist: waitress>=2.0.0
+Requires-Dist: pytest>=7.4.4
+Requires-Dist: tqdm>=4.62.3
+Requires-Dist: setuptools>=68.0.0
+Requires-Dist: httpx[http2]>=0.19.0
+Requires-Dist: pandas>=1.3.3
+Requires-Dist: h5py>=3.4.0
+
+<div align="center">
+  <picture>
+    <source media="(prefers-color-scheme: light)" srcset="https://github.com/BirchKwok/LynseDB/blob/main/pic/logo.png">
+    <source media="(prefers-color-scheme: dark)" srcset="https://github.com/BirchKwok/LynseDB/blob/main/pic/logo.png">
+    <img alt="LynseDB logo" src="https://github.com/BirchKwok/LynseDB/blob/main/pic/logo.png" height="100">
+  </picture>
+</div>
+<br>
+
+<p align="center">
+  <a href="https://discord.com/invite/rcYK5nYF"><img src="https://img.shields.io/badge/Discord-Online-brightgreen" alt="Discord"></a>
+  <a href="https://badge.fury.io/py/LynseDB"><img src="https://badge.fury.io/py/LynseDB.svg" alt="PyPI version"></a>
+  <a href="https://pypi.org/project/LynseDB/"><img src="https://img.shields.io/pypi/pyversions/LynseDB" alt="PyPI - Python Version"></a>
+  <a href="https://pypi.org/project/LynseDB/"><img src="https://img.shields.io/pypi/l/LynseDB" alt="PyPI - License"></a>
+  <a href="https://github.com/BirchKwok/LynseDB/actions/workflows/python-tests.yml"><img src="https://github.com/BirchKwok/LynseDB/actions/workflows/python-tests.yml/badge.svg" alt="Python testing"></a>
+  <a href="https://github.com/BirchKwok/LynseDB/actions/workflows/docker-tests.yml"><img src="https://github.com/BirchKwok/LynseDB/actions/workflows/docker-tests.yml/badge.svg" alt="Docker build"></a>
+</p>
+
+
+⚡ **Server-optional, simple parameters, simple API.**
+
+⚡ **Fast, memory-efficient, easily scales to millions of vectors.**
+
+⚡ **Friendly caching technology stores recently queried vectors for accelerated access.**
+
+⚡ **Based on a generic Python software stack, platform-independent, highly versatile.**
+
+*LynseDB* is a vector database implemented purely in Python, designed to be lightweight, server-optional, and easy to deploy locally or remotely. It offers straightforward and clear Python APIs, aiming to lower the entry barrier for using vector databases. 
+
+LynseDB focuses on achieving 100% recall, prioritizing recall accuracy over high-speed search performance. This approach ensures that users can reliably retrieve all relevant vector data, making LynseDB particularly suitable for applications that require responses within hundreds of milliseconds.
+
+- [x] **Now supports HTTP API and Python local code API and Docker deployment.**
+- [X] **Now supports transaction management; if a commit fails, it will automatically roll back.**
+
+<br>
+
+:warning: **WARNING**
+
+**Not yet backward compatible** 
+
+LynseDB is actively being updated, and API backward compatibility is not guaranteed. You should use version numbers as a strong constraint during deployment to avoid unnecessary feature conflicts and errors. 
+
+**Data size constraints**
+
+Although our goal is to enable brute force search or inverted indexing on billion-scale vectors, we currently still recommend using it on a scale of millions of vectors or less for the best experience.
+
+**python's native api is not process-safe**
+
+The Python native API is recommended for use in single-process environments, whether single-threaded or multi-threaded; for ensuring process safety in multi-process environments, please use the HTTP API.
+
+
+## Prerequisite
+
+- [x] python version >= 3.9
+- [x] Owns one of the operating systems: Windows, macOS, or Ubuntu (or other Linux distributions). The recommendation is for the latest version of the system, but non-latest versions should also be installable, although they have not been tested.
+- [x] Memory >= 4GB, Free Disk >= 4GB.
+
+## Install Client API package (Mandatory)
+
+```shell
+pip install LynseDB
+```
+
+## If you wish to use Docker (Optional)
+
+**You must first [install Docker](https://docs.docker.com/engine/install/) on the host machine.**
+
+```shell
+docker pull birchkwok/LynseDB:latest
+```
+
+## Qucik Start
+
+```python
+import lynse
+
+print("LynseDB version is: ", lynse.__version__)
+```
+
+    LynseDB version is:  0.0.1
+
+
+## Initialize Database
+
+LynseDB now supports HTTP API and Python native code API. 
+
+
+The HTTP API mode requires starting an HTTP server beforehand. You have two options: 
+- start directly.
+  
+  For direct startup, the default port is 7637. You can run the following command in the terminal to start the service:
+```shell
+lynse run --host localhost --port 7637
+```
+
+- within Docker
+  
+  In Docker, You can run the following command in the terminal to start the service:
+```shell
+docker run -p 7637:7637 birchkwok/LynseDB:latest
+```
+- Remote deploy
+
+  If you want to deploy remotely, you can bind the image to port 80 of the remote host, or allow the host to open access to port 7637.
+  such as:
+```shell
+docker run -p 80:7637 birchkwok/LynseDB:latest
+```
+
+- test if api available
+
+  You can directly request in the browser http://localhost:7637
+  
+  For port 80, you can use this url: http://localhost
+  
+  If the image is bound to port 80 of the host in remote deployment, you can directly access it http://your_host_ip
+
+```python
+from lynse import LynseDB
+
+# Use the HTTP API mode, it is suitable for use in production environments.
+my_db = LynseDB("http://localhost:7637")
+# Or use the Python native code API by specifying the database root directory.
+# my_db = LynseDB('my_vec_db')  # Judgment condition, root_path does not start with http or https
+# The Python native code API is recommended only for CI/CD testing or single-user local use.
+```
+
+### create a collection
+
+**`WARNING`**
+
+When using the `require_collection` method to request a collection, if the `drop_if_exists` parameter is set to True, it will delete all content of the collection if it already exists. 
+
+A safer method is to use the `get_collection` method. It is recommended to use the `require_collection` method only when you need to reinitialize a collection or create a new one.
+
+
+```python
+collection = my_db.require_collection("test_collection", dim=4, drop_if_exists=True, scaler_bits=8, description="demo collection")
+```
+
+#### show database collections
+
+
+```python
+my_db.show_collections_details()
+```
+
+
+
+
+<div>
+<table border="1" class="dataframe">
+  <thead>
+    <tr style="text-align: right;">
+      <th></th>
+      <th>chunk_size</th>
+      <th>description</th>
+      <th>dim</th>
+      <th>distance</th>
+      <th>dtypes</th>
+      <th>index_mode</th>
+      <th>initialize_as_collection</th>
+      <th>n_clusters</th>
+      <th>n_threads</th>
+      <th>scaler_bits</th>
+      <th>use_cache</th>
+      <th>warm_up</th>
+    </tr>
+    <tr>
+      <th>collections</th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+    </tr>
+  </thead>
+  <tbody>
+    <tr>
+      <th>test_collection</th>
+      <td>100000</td>
+      <td>demo collection</td>
+      <td>4</td>
+      <td>cosine</td>
+      <td>float32</td>
+      <td>IVF-FLAT</td>
+      <td>True</td>
+      <td>16</td>
+      <td>10</td>
+      <td>8</td>
+      <td>True</td>
+      <td>False</td>
+    </tr>
+  </tbody>
+</table>
+</div>
+
+
+
+#### update description
+
+
+```python
+collection.update_description("test2")
+my_db.show_collections_details()
+```
+
+
+
+
+<div>
+<table border="1" class="dataframe">
+  <thead>
+    <tr style="text-align: right;">
+      <th></th>
+      <th>chunk_size</th>
+      <th>description</th>
+      <th>dim</th>
+      <th>distance</th>
+      <th>dtypes</th>
+      <th>index_mode</th>
+      <th>initialize_as_collection</th>
+      <th>n_clusters</th>
+      <th>n_threads</th>
+      <th>scaler_bits</th>
+      <th>use_cache</th>
+      <th>warm_up</th>
+    </tr>
+    <tr>
+      <th>collections</th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+      <th></th>
+    </tr>
+  </thead>
+  <tbody>
+    <tr>
+      <th>test_collection</th>
+      <td>100000</td>
+      <td>test2</td>
+      <td>4</td>
+      <td>cosine</td>
+      <td>float32</td>
+      <td>IVF-FLAT</td>
+      <td>True</td>
+      <td>16</td>
+      <td>10</td>
+      <td>8</td>
+      <td>True</td>
+      <td>False</td>
+    </tr>
+  </tbody>
+</table>
+</div>
+
+
+
+### Add vectors
+
+When inserting vectors, collection requires manually running the `commit` function or inserting within the `insert_session` function context manager, which will run the `commit` function in the background.
+
+
+```python
+with collection.insert_session():
+    id = collection.add_item(vector=[0.01, 0.34, 0.74, 0.31], id=1, field={'field': 'test_1', 'order': 0})   # id = 0
+    id = collection.add_item(vector=[0.36, 0.43, 0.56, 0.12], id=2, field={'field': 'test_1', 'order': 1})   # id = 1
+    id = collection.add_item(vector=[0.03, 0.04, 0.10, 0.51], id=3, field={'field': 'test_2', 'order': 2})   # id = 2
+    id = collection.add_item(vector=[0.11, 0.44, 0.23, 0.24], id=4, field={'field': 'test_2', 'order': 3})   # id = 3
+    id = collection.add_item(vector=[0.91, 0.43, 0.44, 0.67], id=5, field={'field': 'test_2', 'order': 4})   # id = 4
+    id = collection.add_item(vector=[0.92, 0.12, 0.56, 0.19], id=6, field={'field': 'test_3', 'order': 5})   # id = 5
+    id = collection.add_item(vector=[0.18, 0.34, 0.56, 0.71], id=7, field={'field': 'test_1', 'order': 6})   # id = 6
+    id = collection.add_item(vector=[0.01, 0.33, 0.14, 0.31], id=8, field={'field': 'test_2', 'order': 7})   # id = 7
+    id = collection.add_item(vector=[0.71, 0.75, 0.91, 0.82], id=9, field={'field': 'test_3', 'order': 8})   # id = 8
+    id = collection.add_item(vector=[0.75, 0.44, 0.38, 0.75], id=10, field={'field': 'test_1', 'order': 9})  # id = 9
+
+# If you do not use the insert_session function, you need to manually call the commit function to submit the data
+# collection.commit()
+```
+
+
+```python
+# or use the bulk_add_items function
+# with collection.insert_session():
+#     ids = collection.bulk_add_items([([0.01, 0.34, 0.74, 0.31], 0, {'field': 'test_1', 'order': 0}), 
+#                                      ([0.36, 0.43, 0.56, 0.12], 1, {'field': 'test_1', 'order': 1}), 
+#                                      ([0.03, 0.04, 0.10, 0.51], 2, {'field': 'test_2', 'order': 2}),
+#                                      ([0.11, 0.44, 0.23, 0.24], 3, {'field': 'test_2', 'order': 3}), 
+#                                      ([0.91, 0.43, 0.44, 0.67], 4, {'field': 'test_2', 'order': 4}), 
+#                                      ([0.92, 0.12, 0.56, 0.19], 5, {'field': 'test_3', 'order': 5}),
+#                                      ([0.18, 0.34, 0.56, 0.71], 6, {'field': 'test_1', 'order': 6}), 
+#                                      ([0.01, 0.33, 0.14, 0.31], 7, {'field': 'test_2', 'order': 7}), 
+#                                      ([0.71, 0.75, 0.91, 0.82], 8, {'field': 'test_3', 'order': 8}),
+#                                      ([0.75, 0.44, 0.38, 0.75], 9, {'field': 'test_1', 'order': 9})])
+# print(ids)  # [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
+```
+
+### Query
+
+
+The default similarity measure for query is cosine. You can specify cosine or L2 to obtain the similarity measure you need.
+
+```python
+collection.search(vector=[0.36, 0.43, 0.56, 0.12], k=10)
+```
+
+
+
+
+    (array([ 2,  9,  1,  4,  6,  5, 10,  7,  8,  3]),
+     array([1.        , 0.92355633, 0.86097705, 0.85727406, 0.81551266,
+            0.813797  , 0.78595245, 0.7741583 , 0.6871773 , 0.34695023]))
+
+
+
+The `query_report_` attribute is the report of the most recent query. When multiple queries are conducted simultaneously, this attribute will only save the report of the last completed query result.
+
+```python
+print(collection.search_report_)
+```
+
+    
+    * - MOST RECENT QUERY REPORT -
+    | - Collection Shape: (10, 4)
+    | - Query Time: 0.13898 s
+    | - Query Distance: cosine
+    | - Query K: 10
+    | - Top 10 Results ID: [ 2  9  1  4  6  5 10  7  8  3]
+    | - Top 10 Results Similarity: [1.         0.92355633 0.86097705 0.85727406 0.81551266 0.813797
+     0.78595245 0.7741583  0.6871773  0.34695023]
+    * - END OF REPORT -
+    
+
+
+### Use Filter
+
+Using the Filter class for result filtering can maximize Recall. 
+
+The Filter class now supports `must`, `any`, and `must_not` parameters, all of which only accept list-type argument values. 
+
+The filtering conditions in `must` must be met, those in `must_not` must not be met. 
+
+After filtering with `must` and `must_not` conditions, the conditions in `any` will be considered, and at least one of the conditions in `any` must be met. 
+
+If there is a conflict between the conditions in `any` and those in `must` or `must_not`, the conditions in `any` will be ignored.
+
+```python
+import operator
+
+from lynse.core_components.kv_cache.filter import Filter, FieldCondition, MatchField, MatchID
+
+collection.search(
+    vector=[0.36, 0.43, 0.56, 0.12],
+    k=10,
+    search_filter=Filter(
+        must=[
+            FieldCondition(key='field', matcher=MatchField('test_1')),  # Support for filtering fields
+        ],
+        any=[
+            FieldCondition(key='order', matcher=MatchField(8, comparator=operator.ge)),
+            FieldCondition(key=":match_id:", matcher=MatchID([1, 2, 3, 4, 5])),  # Support for filtering IDs
+        ],
+        must_not=[
+            FieldCondition(key=":match_id:", matcher=MatchID([8])),
+            FieldCondition(key='order', matcher=MatchField(8, comparator=operator.ge)),
+        ]
+    )
+)
+
+print(collection.search_report_)
+```
+
+    
+    * - MOST RECENT QUERY REPORT -
+    | - Collection Shape: (10, 4)
+    | - Query Time: 0.09066 s
+    | - Query Distance: cosine
+    | - Query K: 10
+    | - Top 10 Results ID: [2 1]
+    | - Top 10 Results Similarity: [1.         0.86097705]
+    * - END OF REPORT -
+    
+
+
+### Drop a collection
+
+`WARNING: This operation cannot be undone`
+
+
+```python
+print("Collection list before dropping:", my_db.show_collections())
+status = my_db.drop_collection("test_collection")
+print("Collection list after dropped:", my_db.show_collections())
+```
+
+    Collection list before dropping: ['test_collection']
+    {'status': 'success', 'params': {'collection_name': 'test_collection', 'exists': False}}
+    Collection list after dropped: []
+
+
+## Drop the database
+
+`WARNING: This operation cannot be undone`
+
+
+```python
+my_db.drop_database()
+my_db
+```
+
+
+
+
+    LynseDB remote server at http://localhost:7637 does not exist.
+
+
+
+
+```python
+my_db.database_exists()
+```
+
+
+
+
+    {'status': 'success', 'params': {'exists': False}}
+
+
+
+## What's Next
+
+- [Collection's operations](https://github.com/BirchKwok/LynseDB/blob/main/tutorials/collections.ipynb)
+- [Add vectors to collection](https://github.com/BirchKwok/LynseDB/blob/main/tutorials/add_vectors.ipynb)
+- [Using different indexing methods](https://github.com/BirchKwok/LynseDB/blob/main/tutorials/index_mode.ipynb)
+- [Using different distance metric functions](https://github.com/BirchKwok/LynseDB/blob/main/tutorials/distance.ipynb)
+- [Diversified queries](https://github.com/BirchKwok/LynseDB/blob/main/tutorials/queries.ipynb)