LIVVext 1.0.0__tar.gz

livvext-1.0.0/.github/workflows/pre-commit.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Pre-Commit
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+
+  pre-commit:
+    runs-on: ubuntu-latest
+    timeout-minutes: 2
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+      - name: Set up python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.13
+      - name: Runs pre-commit
+        run: |
+          pip install pre-commit
+          pre-commit run -a

livvext-1.0.0/.github/workflows/publish.yml

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+# This workflow will upload a Python Package to PyPI when a release is created
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  release-build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Set up Pixi
+        uses: prefix-dev/setup-pixi@v0.9.4
+        with:
+          pixi-version: v0.62.2
+          environments: buildenv
+
+      - name: Build release distributions
+        run: |
+          # NOTE: put your own distribution build steps here.
+          pixi run -e buildenv python -m build
+
+      - name: Upload distributions
+        uses: actions/upload-artifact@v4
+        with:
+          name: release-dists
+          path: dist/
+
+  pypi-publish:
+    runs-on: ubuntu-latest
+    needs:
+      - release-build
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing
+      id-token: write
+
+    # Dedicated environments with protections for publishing are strongly recommended.
+    # For more information, see: https://docs.github.com/en/actions/deployment/targeting-different-environments/using-environments-for-deployment#deployment-protection-rules
+    environment:
+      name: pypi
+      # OPTIONAL: uncomment and update to include your PyPI project URL in the deployment status:
+      # url: https://pypi.org/p/YOURPROJECT
+      #
+      # ALTERNATIVE: if your GitHub Release name is the PyPI project version string
+      # ALTERNATIVE: exactly, uncomment the following line instead:
+      # url: https://pypi.org/project/YOURPROJECT/${{ github.event.release.name }}
+
+    steps:
+      - name: Retrieve release distributions
+        uses: actions/download-artifact@v4
+        with:
+          name: release-dists
+          path: dist/
+
+      - name: Publish release distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          packages-dir: dist/

livvext-1.0.0/.github/workflows/python-package.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python Tests
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - python-version: "3.10"
+            pixi-env: py310dev
+          - python-version: "3.11"
+            pixi-env: py311dev
+          - python-version: "3.12"
+            pixi-env: py312dev
+          - python-version: "3.13"
+            pixi-env: py313dev
+          - python-version: "3.14"
+            pixi-env: py314dev
+
+    steps:
+    - uses: actions/checkout@v6
+    - name: Set up Pixi ${{ matrix.python-version }}
+      uses: prefix-dev/setup-pixi@v0.9.4
+      with:
+        pixi-version: v0.62.2
+        # Project environment caching uses pixi.lock as the cache key input.
+        # If you don't commit a lockfile, disable caching to avoid ENOENT.
+        # cache: ${{ hashFiles('pixi.lock') != '' }}
+        environments: ${{ matrix.pixi-env }}
+    - name: Run tests
+      run: |
+        pixi run -e ${{ matrix.pixi-env }} pytest -vvv

livvext-1.0.0/.gitignore

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+#### joe made this: http://goel.io/joe
+
+#### python ####
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+
+#### vim ####
+# swap
+[._]*.s[a-v][a-z]
+[._]*.sw[a-p]
+[._]s[a-v][a-z]
+[._]sw[a-p]
+# session
+Session.vim
+# temporary
+.netrwhist
+*~
+# auto-generated tag files
+tags
+
+
+#### microsoftoffice ####
+*.tmp
+
+# Word temporary
+~$*.doc*
+
+# Excel temporary
+~$*.xls*
+
+# Excel Backup File
+*.xlk
+
+# PowerPoint temporary
+~$*.ppt*
+
+# Visio autosave temporary files
+*.~vsd*
+# pixi environments
+.pixi/*
+!.pixi/config.toml

livvext-1.0.0/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v6.0.0
+    hooks:
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+      - id: check-toml
+      - id: check-yaml
+        args: [--unsafe]
+      - id: debug-statements
+      - id: destroyed-symlinks
+      - id: detect-private-key
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.13.0
+    hooks:
+      # Run the linter.
+      - id: ruff-check
+      # Run the formatter.
+      - id: ruff-format

livvext-1.0.0/LICENSE

@@ -0,0 +1,27 @@
+Copyright (c) 2018-2025, UT-BATTELLE, LLC
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation
+and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

livvext-1.0.0/LIVVext.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: LIVVext
+Version: 1.0.0
+Summary: Extensions for the land ice verification and validation toolkit (Livvkit EXtensions)
+Author-email: Michael Kelleher <kelleherme@ornl.gov>, "Joseph H. Kennedy" <kennedyjh@ornl.gov>
+License: BSD-3-Clause
+Project-URL: Homepage, https://github.com/LIVVkit/livvext
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Software Development :: Testing
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Natural Language :: English
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.10
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+Requires-Dist: numpy>=2.2.6
+Requires-Dist: scipy>=1.15.3
+Requires-Dist: xarray>=2025.6.1
+Requires-Dist: dask>=2026.1.2
+Requires-Dist: seaborn>=0.13.2
+Requires-Dist: cftime>=1.6.5
+Requires-Dist: nc-time-axis>=1.4.1
+Requires-Dist: scikit-learn>=1.7.2
+Requires-Dist: ruamel.yaml>=0.19.1
+Requires-Dist: jinja2>=3.1.6
+Requires-Dist: matplotlib>=3.10.8
+Requires-Dist: netcdf4>=1.7.4
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: cartopy>=0.25.0
+Requires-Dist: pybtex>=0.25.1
+Requires-Dist: f90nml>=1.5
+Requires-Dist: loguru>=0.7.3
+Requires-Dist: livvkit>=3.3.0
+Dynamic: license-file

livvext-1.0.0/LIVVext.egg-info/SOURCES.txt

@@ -0,0 +1,200 @@
+.gitignore
+.pre-commit-config.yaml
+LICENSE
+README.md
+env.yml
+pyproject.toml
+run_lex_pm-cpu.sbatch
+run_livv.sh
+.github/workflows/pre-commit.yml
+.github/workflows/publish.yml
+.github/workflows/python-package.yml
+LIVVext.egg-info/PKG-INFO
+LIVVext.egg-info/SOURCES.txt
+LIVVext.egg-info/dependency_links.txt
+LIVVext.egg-info/entry_points.txt
+LIVVext.egg-info/requires.txt
+LIVVext.egg-info/top_level.txt
+config/cmb_vars.yml
+config/copy_case.sh
+config/rename_case.sh
+config/smb_vars.yml
+config/example/example.yml
+config/template_r025/all.jinja
+config/template_r025/cmb_ais.yml
+config/template_r025/cmb_gis.yml
+config/template_r025/energy_e3sm_ceres_ais.yml
+config/template_r025/energy_e3sm_ceres_gis.yml
+config/template_r025/energy_e3sm_era5_ais.yml
+config/template_r025/energy_e3sm_era5_gis.yml
+config/template_r025/energy_e3sm_merra2_merra_grid_ais.yml
+config/template_r025/energy_e3sm_merra2_merra_grid_gis.yml
+config/template_r025/energy_e3sm_racmo_ais.yml
+config/template_r025/energy_e3sm_racmo_gis.yml
+config/template_r025/smb_ais.yml
+config/template_r025/smb_gis.yml
+config/template_r05/all.jinja
+config/template_r05/cmb_ais.yml
+config/template_r05/cmb_gis.yml
+config/template_r05/energy_e3sm_ceres_ais.yml
+config/template_r05/energy_e3sm_ceres_gis.yml
+config/template_r05/energy_e3sm_era5_ais.yml
+config/template_r05/energy_e3sm_era5_gis.yml
+config/template_r05/energy_e3sm_merra2_merra_grid_ais.yml
+config/template_r05/energy_e3sm_merra2_merra_grid_gis.yml
+config/template_r05/energy_e3sm_racmo_ais.yml
+config/template_r05/energy_e3sm_racmo_gis.yml
+config/template_r05/smb_ais.yml
+config/template_r05/smb_gis.yml
+config/v2.1.r025.IGERA5ELM_MLI-deep_firn_1980_2020/cmb_ais.yml
+config/v2.1.r025.IGERA5ELM_MLI-deep_firn_1980_2020/cmb_gis.yml
+config/v2.1.r025.IGERA5ELM_MLI-deep_firn_1980_2020/energy_e3sm_ceres_ais.yml
+config/v2.1.r025.IGERA5ELM_MLI-deep_firn_1980_2020/energy_e3sm_ceres_gis.yml
+config/v2.1.r025.IGERA5ELM_MLI-deep_firn_1980_2020/energy_e3sm_era5_ais.yml
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+config/v2.1.r05.BGWCYCL20TR-steve_2005_2014/cmb_ais.yml
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+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_ceres_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_era5_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_era5_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_merra2_merra_grid_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_merra2_merra_grid_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_racmo_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/energy_e3sm_racmo_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/smb_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0001_0100/smb_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/cmb_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/cmb_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_ceres_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_ceres_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_era5_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_era5_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_merra2_merra_grid_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_merra2_merra_grid_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_racmo_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/energy_e3sm_racmo_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/smb_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0101_0200/smb_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/cmb_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/cmb_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_ceres_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_ceres_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_era5_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_era5_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_merra2_merra_grid_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_merra2_merra_grid_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_racmo_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/energy_e3sm_racmo_gis.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/smb_ais.yml
+config/v3.LR.piControl.I.hex_eqm_0201_0300/smb_gis.yml
+livvext/__init__.py
+livvext/annual_cycle.py
+livvext/common.py
+livvext/compare_gridded.py
+livvext/convert_cfg.py
+livvext/generate_cfg.py
+livvext/time_series_plot.py
+livvext/utils.py
+livvext/energy/__init__.py
+livvext/energy/energy.py
+livvext/example/example.py
+livvext/postproc/README.md
+livvext/postproc/e3sm/postproc.sbatch
+livvext/postproc/e3sm/split_files.sh
+livvext/smb/__init__.py
+livvext/smb/smb_icecores.py
+livvext/smb/smb/plot_IB_hist.py
+livvext/smb/smb/plot_IB_scatter.py
+livvext/smb/smb/plot_core_hists.py
+livvext/smb/smb/plot_core_transects.py
+livvext/smb/smb/plot_spatial.py
+livvext/smb/smb/preproc.py
+livvext/smb/smb/utils.py
+tests/conftest.py
+tests/extension_simple.py
+tests/json_to_convert.json
+tests/simple_test.yml
+tests/test_common.py
+tests/test_convert.py
+tests/test_simple.py
+tests/test_utils.py
+tests/yml_reference.yml

livvext-1.0.0/LIVVext.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

livvext-1.0.0/LIVVext.egg-info/entry_points.txt

@@ -0,0 +1,2 @@
+[console_scripts]
+lex-cfg = livvext.generate_cfg:main

livvext-1.0.0/LIVVext.egg-info/requires.txt

@@ -0,0 +1,18 @@
+numpy>=2.2.6
+scipy>=1.15.3
+xarray>=2025.6.1
+dask>=2026.1.2
+seaborn>=0.13.2
+cftime>=1.6.5
+nc-time-axis>=1.4.1
+scikit-learn>=1.7.2
+ruamel.yaml>=0.19.1
+jinja2>=3.1.6
+matplotlib>=3.10.8
+netcdf4>=1.7.4
+pandas>=2.2.3
+cartopy>=0.25.0
+pybtex>=0.25.1
+f90nml>=1.5
+loguru>=0.7.3
+livvkit>=3.3.0

livvext-1.0.0/LIVVext.egg-info/top_level.txt

@@ -0,0 +1 @@
+livvext

livvext-1.0.0/PKG-INFO

@@ -0,0 +1,42 @@
+Metadata-Version: 2.4
+Name: LIVVext
+Version: 1.0.0
+Summary: Extensions for the land ice verification and validation toolkit (Livvkit EXtensions)
+Author-email: Michael Kelleher <kelleherme@ornl.gov>, "Joseph H. Kennedy" <kennedyjh@ornl.gov>
+License: BSD-3-Clause
+Project-URL: Homepage, https://github.com/LIVVkit/livvext
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Software Development :: Testing
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Natural Language :: English
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.10
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+Requires-Dist: numpy>=2.2.6
+Requires-Dist: scipy>=1.15.3
+Requires-Dist: xarray>=2025.6.1
+Requires-Dist: dask>=2026.1.2
+Requires-Dist: seaborn>=0.13.2
+Requires-Dist: cftime>=1.6.5
+Requires-Dist: nc-time-axis>=1.4.1
+Requires-Dist: scikit-learn>=1.7.2
+Requires-Dist: ruamel.yaml>=0.19.1
+Requires-Dist: jinja2>=3.1.6
+Requires-Dist: matplotlib>=3.10.8
+Requires-Dist: netcdf4>=1.7.4
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: cartopy>=0.25.0
+Requires-Dist: pybtex>=0.25.1
+Requires-Dist: f90nml>=1.5
+Requires-Dist: loguru>=0.7.3
+Requires-Dist: livvkit>=3.3.0
+Dynamic: license-file