LCNE-patchseq-analysis 0.32.0__tar.gz → 0.32.2__tar.gz

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Files changed (79) hide show
  1. lcne_patchseq_analysis-0.32.2/.gitattributes +1 -0
  2. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/PKG-INFO +2 -1
  3. lcne_patchseq_analysis-0.32.2/notebook/demo_raw_spike_waveforms.ipynb +8473 -0
  4. lcne_patchseq_analysis-0.32.2/notebook/efel.ipynb +6230 -0
  5. lcne_patchseq_analysis-0.32.2/notebook/figures.ipynb +761 -0
  6. lcne_patchseq_analysis-0.32.2/notebook/morphology.ipynb +258 -0
  7. lcne_patchseq_analysis-0.32.2/notebook/playground.ipynb +1654 -0
  8. lcne_patchseq_analysis-0.32.2/notebook/population_analysis.ipynb +227 -0
  9. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/pyproject.toml +2 -1
  10. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/__init__.py +1 -1
  11. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis.egg-info/PKG-INFO +2 -1
  12. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis.egg-info/SOURCES.txt +1 -0
  13. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis.egg-info/requires.txt +1 -0
  14. lcne_patchseq_analysis-0.32.0/.gitattributes +0 -2
  15. lcne_patchseq_analysis-0.32.0/notebook/efel.ipynb +0 -3
  16. lcne_patchseq_analysis-0.32.0/notebook/figures.ipynb +0 -3
  17. lcne_patchseq_analysis-0.32.0/notebook/morphology.ipynb +0 -3
  18. lcne_patchseq_analysis-0.32.0/notebook/playground.ipynb +0 -3
  19. lcne_patchseq_analysis-0.32.0/notebook/population_analysis.ipynb +0 -3
  20. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.codeocean/datasets.json +0 -0
  21. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.codeocean/resources.json +0 -0
  22. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.flake8 +0 -0
  23. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  24. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  25. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/ISSUE_TEMPLATE/user-story.md +0 -0
  26. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/workflows/init.yml +0 -0
  27. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/workflows/tag_and_publish.yml +0 -0
  28. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.github/workflows/test_and_lint.yml +0 -0
  29. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/.gitignore +0 -0
  30. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/LICENSE +0 -0
  31. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/README.md +0 -0
  32. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/Makefile +0 -0
  33. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/make.bat +0 -0
  34. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/source/_static/dark-logo.svg +0 -0
  35. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/source/_static/light-logo.svg +0 -0
  36. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/source/conf.py +0 -0
  37. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/docs/source/index.rst +0 -0
  38. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/environment/Dockerfile +0 -0
  39. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/environment/postInstall +0 -0
  40. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/setup.cfg +0 -0
  41. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/setup.py +0 -0
  42. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/data_util/__init__.py +0 -0
  43. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/data_util/mesh.py +0 -0
  44. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/data_util/metadata.py +0 -0
  45. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/data_util/nwb.py +0 -0
  46. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/__init__.py +0 -0
  47. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/core.py +0 -0
  48. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/efel_per_spike_features.json +0 -0
  49. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/io.py +0 -0
  50. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/pipeline.py +0 -0
  51. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/plot.py +0 -0
  52. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/population.py +0 -0
  53. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/efel/util.py +0 -0
  54. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/__init__.py +0 -0
  55. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/asymmetry_index_from_eFEL.ipynb +0 -0
  56. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/asymmetry_index_from_eFEL.py +0 -0
  57. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/asymmetry_index_from_waveform.ipynb +0 -0
  58. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/asymmetry_index_from_waveform.py +0 -0
  59. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/fig_3a.py +0 -0
  60. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/fig_3b.py +0 -0
  61. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/fig_3c.py +0 -0
  62. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/main_figure.py +0 -0
  63. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/sup_figures.py +0 -0
  64. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/figures/util.py +0 -0
  65. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/__init__.py +0 -0
  66. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/ephys.py +0 -0
  67. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/lims.py +0 -0
  68. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/metadata.py +0 -0
  69. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/s3.py +0 -0
  70. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/pipeline_util/sequencing.py +0 -0
  71. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/plot_util/swc.py +0 -0
  72. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/population_analysis/__init__.py +0 -0
  73. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/population_analysis/anova.py +0 -0
  74. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/population_analysis/filters.py +0 -0
  75. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis/population_analysis/spikes.py +0 -0
  76. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis.egg-info/dependency_links.txt +0 -0
  77. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/src/LCNE_patchseq_analysis.egg-info/top_level.txt +0 -0
  78. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/tests/__init__.py +0 -0
  79. {lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/tests/test_example.py +0 -0
lcne_patchseq_analysis-0.32.2/.gitattributes ADDED
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+ *.obj filter=lfs diff=lfs merge=lfs -text
{lcne_patchseq_analysis-0.32.0 → lcne_patchseq_analysis-0.32.2}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: LCNE-patchseq-analysis
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- Version: 0.32.0
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+ Version: 0.32.2
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  Summary: Generated from aind-library-template
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  Author: Allen Institute for Neural Dynamics
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  Author-email: Han Hou <han.hou@alleninstitute.org>
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  Requires-Dist: requests
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  Requires-Dist: trimesh
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  Requires-Dist: statsmodels
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+ Requires-Dist: matplotlib_venn
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  Provides-Extra: dev
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  Requires-Dist: black; extra == "dev"
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  Requires-Dist: coverage; extra == "dev"